SimMultiCorrData: Simulation of Correlated Data with Multiple Variable Types

Generate continuous (normal or non-normal), binary, ordinal, and count (Poisson or Negative Binomial) variables with a specified correlation matrix. It can also produce a single continuous variable. This package can be used to simulate data sets that mimic real-world situations (i.e. clinical or genetic data sets, plasmodes). All variables are generated from standard normal variables with an imposed intermediate correlation matrix. Continuous variables are simulated by specifying mean, variance, skewness, standardized kurtosis, and fifth and sixth standardized cumulants using either Fleishman's third-order (<doi:10.1007/BF02293811>) or Headrick's fifth-order (<doi:10.1016/S0167-9473(02)00072-5>) polynomial transformation. Binary and ordinal variables are simulated using a modification of GenOrd's ordsample function. Count variables are simulated using the inverse cdf method. There are two simulation pathways which differ primarily according to the calculation of the intermediate correlation matrix. In Correlation Method 1, the intercorrelations involving count variables are determined using a simulation based, logarithmic correlation correction (adapting Yahav and Shmueli's 2012 method, <doi:10.1002/asmb.901>). In Correlation Method 2, the count variables are treated as ordinal (adapting Barbiero and Ferrari's 2015 modification of GenOrd, <doi:10.1002/asmb.2072>). There is an optional error loop that corrects the final correlation matrix to be within a user-specified precision value of the target matrix. The package also includes functions to calculate standardized cumulants for theoretical distributions or from real data sets, check if a target correlation matrix is within the possible correlation bounds (given the distributions of the simulated variables), summarize results (numerically or graphically), to verify valid power method pdfs, and to calculate lower standardized kurtosis bounds.

Version: 0.2.1
Depends: R (≥ 3.3.1)
Imports: BB, nleqslv, GenOrd, psych, Matrix, VGAM, triangle, ggplot2, grid, stats, utils
Suggests: knitr, rmarkdown, printr, testthat
Published: 2017-11-09
Author: Allison Cynthia Fialkowski
Maintainer: Allison Cynthia Fialkowski <allijazz at uab.edu>
License: GPL-2
URL: https://github.com/AFialkowski/SimMultiCorrData
NeedsCompilation: no
Materials: README NEWS
CRAN checks: SimMultiCorrData results

Downloads:

Reference manual: SimMultiCorrData.pdf
Vignettes: Benefits of SimMultiCorrData and Comparison to Other Packages
Comparison of Simulated Distribution to Theoretical Distribution or Empirical Data
Overview of Error Loop
Functions by Topic
Comparison of Correlation Method 1 and Correlation Method 2
Using the Sixth Cumulant Correction to Find Valid Power Method Pdfs
Variable Types
Overall Workflow for Data Simulation
Package source: SimMultiCorrData_0.2.1.tar.gz
Windows binaries: r-prerel: SimMultiCorrData_0.2.1.zip, r-release: SimMultiCorrData_0.2.1.zip, r-oldrel: SimMultiCorrData_0.2.1.zip
OS X binaries: r-prerel: SimMultiCorrData_0.2.1.tgz, r-release: SimMultiCorrData_0.2.1.tgz
Old sources: SimMultiCorrData archive

Reverse dependencies:

Reverse depends: SimCorrMix, SimRepeat

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