A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A3 | Accurate, Adaptable, and Accessible Error Metrics for Predictive Models |

abbyyR | Access to Abbyy Optical Character Recognition (OCR) API |

abc | Tools for Approximate Bayesian Computation (ABC) |

abc.data | Data Only: Tools for Approximate Bayesian Computation (ABC) |

ABC.RAP | Array Based CpG Region Analysis Pipeline |

ABCanalysis | Computed ABC Analysis |

abcdeFBA | ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package |

ABCoptim | Implementation of Artificial Bee Colony (ABC) Optimization |

ABCp2 | Approximate Bayesian Computational Model for Estimating P2 |

abcrf | Approximate Bayesian Computation via Random Forests |

abctools | Tools for ABC Analyses |

abd | The Analysis of Biological Data |

abe | Augmented Backward Elimination |

abf2 | Load Gap-Free Axon ABF2 Files |

ABHgenotypeR | Easy Visualization of ABH Genotypes |

abind | Combine Multidimensional Arrays |

abjutils | Useful Tools for Jurimetrical Analysis Used by the Brazilian Jurimetrics Association |

abn | Modelling Multivariate Data with Additive Bayesian Networks |

abnormality | Measure a Subject's Abnormality with Respect to a Reference Population |

abodOutlier | Angle-Based Outlier Detection |

ABPS | The Abnormal Blood Profile Score to Detect Blood Doping |

AbsFilterGSEA | Improved False Positive Control of Gene-Permuting GSEA with Absolute Filtering |

AbSim | Time Resolved Simulations of Antibody Repertoires |

abundant | High-Dimensional Principal Fitted Components and Abundant Regression |

Ac3net | Inferring Directional Conservative Causal Core Gene Networks |

ACA | Abrupt Change-Point or Aberration Detection in Point Series |

acc | Exploring Accelerometer Data |

accelerometry | Functions for Processing Minute-to-Minute Accelerometer Data |

accelmissing | Missing Value Imputation for Accelerometer Data |

AcceptanceSampling | Creation and Evaluation of Acceptance Sampling Plans |

ACCLMA | ACC & LMA Graph Plotting |

accrual | Bayesian Accrual Prediction |

accrued | Data Quality Visualization Tools for Partially Accruing Data |

accSDA | Accelerated Sparse Discriminant Analysis |

ACD | Categorical data analysis with complete or missing responses |

ACDm | Tools for Autoregressive Conditional Duration Models |

acebayes | Optimal Bayesian Experimental Design using the ACE Algorithm |

acepack | ACE and AVAS for Selecting Multiple Regression Transformations |

ACEt | Estimating Dynamic Heritability and Twin Model Comparison |

acid | Analysing Conditional Income Distributions |

acm4r | Align-and-Count Method comparisons of RFLP data |

ACMEeqtl | Estimation of Interpretable eQTL Effect Sizes Using a Log of Linear Model |

acmeR | Implements ACME Estimator of Bird and Bat Mortality by Wind Turbines |

ACNE | Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization |

acnr | Annotated Copy-Number Regions |

acopula | Modelling dependence with multivariate Archimax (or any user-defined continuous) copulas |

AcousticNDLCodeR | Coding Sound Files for Use with NDL |

acp | Autoregressive Conditional Poisson |

aCRM | Convenience functions for analytical Customer Relationship Management |

AcrossTic | A Cost-Minimal Regular Spanning Subgraph with TreeClust |

acrt | Autocorrelation Robust Testing |

acs | Download, Manipulate, and Present American Community Survey and Decennial Data from the US Census |

ACSNMineR | Gene Enrichment Analysis from ACSN Maps or GMT Files |

acss | Algorithmic Complexity for Short Strings |

acss.data | Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method) |

ACSWR | A Companion Package for the Book "A Course in Statistics with R" |

ACTCD | Asymptotic Classification Theory for Cognitive Diagnosis |

Actigraphy | Actigraphy Data Analysis |

ActiveDriver | Finding Cancer Driver Proteins with Enriched Mutations in Post-Translational Modification Sites |

activity | Animal Activity Statistics |

activpalProcessing | Process activPAL Events Files |

actogrammr | Read in Activity Data and Plot Actograms |

actuar | Actuarial Functions and Heavy Tailed Distributions |

AcuityView | A Package for Displaying Visual Scenes as They May Appear to an Animal with Lower Acuity |

ada | The R Package Ada for Stochastic Boosting |

adabag | Applies Multiclass AdaBoost.M1, SAMME and Bagging |

adagio | Discrete and Global Optimization Routines |

AdapEnetClass | A Class of Adaptive Elastic Net Methods for Censored Data |

adapr | Implementation of an Accountable Data Analysis Process |

AdapSamp | Adaptive Sampling Algorithms |

adaptalint | Check Code Style Painlessly |

AdaptFit | Adaptive Semiparametic Regression |

AdaptFitOS | Adaptive Semiparametric Additive Regression with Simultaneous Confidence Bands and Specification Tests |

AdaptGauss | Gaussian Mixture Models (GMM) |

adaptiveGPCA | Adaptive Generalized PCA |

AdaptiveSparsity | Adaptive Sparsity Models |

adaptivetau | Tau-Leaping Stochastic Simulation |

adaptMCMC | Implementation of a Generic Adaptive Monte Carlo Markov Chain Sampler |

adaptsmoFMRI | Adaptive Smoothing of FMRI Data |

adaptTest | Adaptive two-stage tests |

AdaSampling | Adaptive Sampling for Positive Unlabeled and Label Noise Learning |

ADCT | Adaptive Design in Clinical Trials |

addhaz | Binomial and Multinomial Additive Hazards Models |

addhazard | Fit Additive Hazards Models for Survival Analysis |

addinslist | Discover and Install Useful RStudio Addins |

additiveDEA | Additive Data Envelopment Analysis Models |

additivityTests | Additivity Tests in the Two Way Anova with Single Sub-class Numbers |

addreg | Additive Regression for Discrete Data |

ADDT | Analysis of Accelerated Destructive Degradation Test Data |

ade4 | Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences |

ade4TkGUI | 'ade4' Tcl/Tk Graphical User Interface |

adeba | Adaptive Density Estimation by Bayesian Averaging |

adegenet | Exploratory Analysis of Genetic and Genomic Data |

adegraphics | An S4 Lattice-Based Package for the Representation of Multivariate Data |

adehabitatHR | Home Range Estimation |

adehabitatHS | Analysis of Habitat Selection by Animals |

adehabitatLT | Analysis of Animal Movements |

adehabitatMA | Tools to Deal with Raster Maps |

adephylo | Exploratory Analyses for the Phylogenetic Comparative Method |

adepro | A 'shiny' Application for the (Audio-)Visualization of Adverse Event Profiles |

AdequacyModel | Adequacy of Probabilistic Models and General Purpose Optimization |

adespatial | Multivariate Multiscale Spatial Analysis |

adfExplorer | Import from and Export to Amiga Disk Files |

ADGofTest | Anderson-Darling GoF test |

AdhereR | Adherence to Medications |

adhoc | Calculate Ad Hoc Distance Thresholds for DNA Barcoding Identification |

adimpro | Adaptive Smoothing of Digital Images |

adiv | Analysis of Diversity |

AdjBQR | Adjusted Bayesian Quantile Regression Inference |

adjclust | Adjacency-Constrained Clustering of a Block-Diagonal Similarity Matrix |

adjustedcranlogs | Remove Automated and Repeated Downloads from 'RStudio' 'CRAN' Download Logs |

adklakedata | Adirondack Long-Term Lake Data |

adlift | An Adaptive Lifting Scheme Algorithm |

AdMit | Adaptive Mixture of Student-t Distributions |

admixturegraph | Admixture Graph Manipulation and Fitting |

ADMM | Algorithms using Alternating Direction Method of Multipliers |

ADMMnet | Regularized Model with Selecting the Number of Non-Zeros |

ADMMsigma | Penalized Precision Matrix Estimation via ADMM |

adnuts | No-U-Turn MCMC Sampling for 'ADMB' and 'TMB' Models |

ADPclust | Fast Clustering Using Adaptive Density Peak Detection |

ADPF | Use Least Squares Polynomial Regression and Statistical Testing to Improve Savitzky-Golay |

ads | Spatial Point Patterns Analysis |

AdvBinomApps | Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information |

advclust | Object Oriented Advanced Clustering |

AdvDif4 | Solving 1D Advection Bi-Flux Diffusion Equation |

adwave | Wavelet Analysis of Genomic Data from Admixed Populations |

adwordsR | Access the 'Google Adwords' API |

AEDForecasting | Change Point Analysis in ARIMA Forecasting |

aemo | Download and Process AEMO Price and Demand Data |

AER | Applied Econometrics with R |

AF | Model-Based Estimation of Confounder-Adjusted Attributable Fractions |

afc | Generalized Discrimination Score |

afCEC | Active Function Cross-Entropy Clustering |

afex | Analysis of Factorial Experiments |

affluenceIndex | Affluence Indices |

AFM | Atomic Force Microscope Image Analysis |

afmToolkit | Functions for Atomic Force Microscope Force-Distance Curves Analysis |

afpt | Tools for Modelling of Animal Flight Performance |

aftgee | Accelerated Failure Time Model with Generalized Estimating Equations |

AGD | Analysis of Growth Data |

AggregateR | Aggregate Numeric, Date and Categorical Variables by an ID |

aggregation | p-Value Aggregation Methods |

AGHmatrix | Relationship Matrices for Diploid and Autopolyploid Species |

agop | Aggregation Operators and Preordered Sets |

AGread | Read Data Files from ActiGraph Monitors |

agRee | Various Methods for Measuring Agreement |

agricolae | Statistical Procedures for Agricultural Research |

agridat | Agricultural Datasets |

agriTutorial | Tutorial Analysis of Some Agricultural Experiments |

agrmt | Calculate Agreement or Consensus in Ordered Rating Scales |

AGSDest | Estimation in Adaptive Group Sequential Trials |

agsemisc | Miscellaneous plotting and utility functions |

ahaz | Regularization for semiparametric additive hazards regression |

AHMbook | Functions and Data for the Book 'Applied Hierarchical Modeling in Ecology' |

ahnr | An Implementation of the Artificial Hydrocarbon Networks |

AhoCorasickTrie | Fast Searching for Multiple Keywords in Multiple Texts |

ahp | Analytic Hierarchy Process |

AHR | Estimation and Testing of Average Hazard Ratios |

AICcmodavg | Model Selection and Multimodel Inference Based on (Q)AIC(c) |

AID | Box-Cox Power Transformation |

aidar | Tools for Reading AIDA Files |

AIG | Automatic Item Generator |

AIM | AIM: adaptive index model |

aimPlot | Create Pie Like Plot for Completeness |

aire.zmvm | Download Mexico City Pollution, Wind, and Temperature Data |

airGR | Suite of GR Hydrological Models for Precipitation-Runoff Modelling |

airGRteaching | Teaching Hydrological Modelling with the GR Rainfall-Runoff Models ('Shiny' Interface Included) |

airr | AIRR Data Representation Standards |

aiRthermo | Atmospheric Thermodynamics and Visualization |

ajv | Another JSON Schema Validator |

Ake | Associated Kernel Estimations |

akima | Interpolation of Irregularly and Regularly Spaced Data |

akmeans | Adaptive Kmeans algorithm based on threshold |

ALA4R | Atlas of Living Australia (ALA) Data and Resources in R |

alabama | Constrained Nonlinear Optimization |

alakazam | Immunoglobulin Clonal Lineage and Diversity Analysis |

albopictus | Age-Structured Population Dynamics Model |

ald | The Asymmetric Laplace Distribution |

ALDqr | Quantile Regression Using Asymmetric Laplace Distribution |

ALEPlot | Accumulated Local Effects (ALE) Plots and Partial Dependence (PD) Plots |

aLFQ | Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data |

alfred | Downloading Time Series from ALFRED Database for Various Vintages |

AlgDesign | Algorithmic Experimental Design |

AlgebraicHaploPackage | Haplotype Two Snips Out of a Paired Group of Patients |

algorithmia | Allows you to Easily Interact with the Algorithmia Platform |

algstat | Algebraic statistics in R |

alignfigR | Visualizing Multiple Sequence Alignments with 'ggplot2' |

alineR | Alignment of Phonetic Sequences Using the 'ALINE' Algorithm |

ALKr | Generate Age-Length Keys for fish populations |

allan | Automated Large Linear Analysis Node |

allanvar | Allan Variance Analysis |

alleHap | Allele Imputation and Haplotype Reconstruction from Pedigree Databases |

allelematch | Identifying unique multilocus genotypes where genotyping error and missing data may be present |

AlleleRetain | Allele Retention, Inbreeding, and Demography |

allelic | A fast, unbiased and exact allelic exact test |

AllPossibleSpellings | Computes all of a word's possible spellings |

alluvial | Alluvial Diagrams |

alphabetr | Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells |

alphahull | Generalization of the Convex Hull of a Sample of Points in the Plane |

alphaOutlier | Obtain Alpha-Outlier Regions for Well-Known Probability Distributions |

alphashape3d | Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud |

alphastable | Inference for Stable Distribution |

AlphaVantageClient | Wrapper for Alpha Vantage API |

alphavantager | Lightweight R Interface to the Alpha Vantage API |

alr3 | Data to Accompany Applied Linear Regression 3rd Edition |

alr4 | Data to Accompany Applied Linear Regression 4th Edition |

ALS | Multivariate Curve Resolution Alternating Least Squares (MCR-ALS) |

ALSCPC | Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form |

ALSM | Companion to Applied Linear Statistical Models |

alterryx | An 'API' Client for the 'Alteryx' Gallery |

altmeta | Alternative Meta-Analysis Methods |

ALTopt | Optimal Experimental Designs for Accelerated Life Testing |

amap | Another Multidimensional Analysis Package |

AMAP.Seq | Compare Gene Expressions from 2-Treatment RNA-Seq Experiments |

ambhasGW | Ground Water Modelling |

AMCP | A Model Comparison Perspective |

AMCTestmakeR | Generate LaTeX Code for Auto-Multiple-Choice (AMC) |

ameco | European Commission Annual Macro-Economic (AMECO) Database |

Amelia | A Program for Missing Data |

amelie | Anomaly Detection with Normal Probability Functions |

amen | Additive and Multiplicative Effects Models for Networks and Relational Data |

AmericanCallOpt | This package includes pricing function for selected American call options with underlying assets that generate payouts |

AmesHousing | The Ames Iowa Housing Data |

AMGET | Post-processing tool for ADAPT 5 |

AMIAS | Alternating Minimization Induced Active Set Algorithms |

AmigaFFH | Commodore Amiga File Format Handler |

aml | Adaptive Mixed LASSO |

AMModels | Adaptive Management Model Manager |

AmmoniaConcentration | Un-Ionized Ammonia Concentration |

aMNLFA | Automated Fitting of Moderated Nonlinear Factor Analysis Through the 'Mplus' Program |

AMOEBA | A Multidirectional Optimum Ecotope-Based Algorithm |

AMORE | A MORE flexible neural network package |

AmostraBrasil | Generates Samples or Complete List of Brazilian IBGE (Instituto Brasileiro De Geografia e Estatistica) Census Households, Geocoding it by Google Maps |

ampd | An Algorithm for Automatic Peak Detection in Noisy Periodic and Quasi-Periodic Signals |

AmpliconDuo | Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts |

AMR | Antimicrobial Resistance Analysis |

amt | Animal Movement Tools |

AmyloGram | Prediction of Amyloid Proteins |

AnaCoDa | Analysis of Codon Data under Stationarity using a Bayesian Framework |

anacor | Simple and Canonical Correspondence Analysis |

analogsea | Interface to 'Digital Ocean' |

analogue | Analogue and Weighted Averaging Methods for Palaeoecology |

analogueExtra | Additional Functions for Use with the Analogue Package |

analytics | Regression Outlier Detection, Stationary Bootstrap, Testing Weak Stationarity, and Other Tools for Data Analysis |

analyz | Model Layer for Automatic Data Analysis via CSV File Interpretation |

AnalyzeFMRI | Functions for Analysis of fMRI Datasets Stored in the ANALYZE or NIFTI Format |

AnalyzeTS | Analyze Fuzzy Time Series |

AncestryMapper | Assigning Ancestry Based on Population References |

anchoredDistr | Post-Processing for the Method of Anchored Distributions |

anchors | Statistical analysis of surveys with anchoring vignettes |

AnDE | An extended Bayesian Learning Technique developed by Dr. Geoff Webb |

andrews | Andrews curves |

anesrake | ANES Raking Implementation |

anfis | Adaptive Neuro Fuzzy Inference System in R |

AnglerCreelSurveySimulation | Simulate a Bus Route Creel Survey of Anglers |

angstroms | Tools for 'ROMS' the Regional Ocean Modeling System |

aniDom | Inferring Dominance Hierarchies and Estimating Uncertainty |

anim.plots | Simple Animated Plots for R |

animalTrack | Animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data |

animation | A Gallery of Animations in Statistics and Utilities to Create Animations |

anipaths | Animation of Observed Trajectories Using Spline-Based Interpolation |

anMC | Compute High Dimensional Orthant Probabilities |

ANN2 | Artificial Neural Networks for Anomaly Detection |

AnnotationBustR | Extract Subsequences from GenBank Annotations |

AnnotLists | AnnotLists: A tool to annotate multiple lists from a specific annotation file |

annovarR | Integrated Framework to Annotate Genetic Variants |

AnnuityRIR | Annuity Random Interest Rates |

anocva | A Non-Parametric Statistical Test to Compare Clustering Structures |

anoint | Analysis of Interactions |

ANOM | Analysis of Means |

anomalize | Tidy Anomaly Detection |

anomaly | Detecting Anomalies in Data |

anomalyDetection | Implementation of Augmented Network Log Anomaly Detection Procedures |

anominate | Alpha-NOMINATE Ideal Point Estimator |

anonymizer | Anonymize Data Containing Personally Identifiable Information |

ANOVA.TFNs | One-Way Analysis of Variance Based on Triangular Fuzzy Numbers |

ANOVAreplication | Test ANOVA Replications by Means of the Prior Predictive p-Value |

AntAngioCOOL | Anti-Angiogenic Peptide Prediction |

antaresProcessing | 'Antares' Results Processing |

antaresRead | Import, Manipulate and Explore the Results of an 'Antares' Simulation |

antaresViz | Antares Visualizations |

AnthropMMD | An R-Shiny Application for Smith's Mean Measure of Divergence (MMD) |

Anthropometry | Statistical Methods for Anthropometric Data |

antitrust | Tools for Antitrust Practitioners |

antiword | Extract Text from Microsoft Word Documents |

AntWeb | programmatic interface to the AntWeb |

anytime | Anything to 'POSIXct' or 'Date' Converter |

aod | Analysis of Overdispersed Data |

aods3 | Analysis of Overdispersed Data using S3 methods |

aoos | Another Object Orientation System |

aop | Adverse Outcome Pathway Analysis |

Aoptbdtvc | A-Optimal Block Designs for Comparing Test Treatments with Controls |

aoristic | aoristic analysis with spatial output (kml) |

apa | Format Outputs of Statistical Tests According to APA Guidelines |

apaTables | Create American Psychological Association (APA) Style Tables |

apaText | Create R Markdown Text for Results in the Style of the American Psychological Association (APA) |

apc | Age-Period-Cohort Analysis |

APCanalysis | Analysis of Unreplicated Orthogonal Experiments using All Possible Comparisons |

apcluster | Affinity Propagation Clustering |

apdesign | An Implementation of the Additive Polynomial Design Matrix |

ape | Analyses of Phylogenetics and Evolution |

apercu | Quick Look at your Data |

apex | Phylogenetic Methods for Multiple Gene Data |

APfun | Geo-Processing Helper Functions |

aphid | Analysis with Profile Hidden Markov Models |

aplore3 | Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd Ed., 2013) |

aplpack | Another Plot Package: 'Bagplots', 'Iconplots', 'Summaryplots', Slider Functions and Others |

APML0 | Augmented and Penalized Minimization Method L0 |

apmsWAPP | Pre- and Postprocessing for AP-MS data analysis based on spectral counts |

apng | Convert Png Files into Animated Png |

appell | Compute Appell's F1 hypergeometric function |

APPEstimation | Adjusted Prediction Model Performance Estimation |

apple | Approximate Path for Penalized Likelihood Estimators |

AppliedPredictiveModeling | Functions and Data Sets for 'Applied Predictive Modeling' |

appnn | Amyloid Propensity Prediction Neural Network |

approximator | Bayesian prediction of complex computer codes |

approxmatch | Approximately Optimal Fine Balance Matching with Multiple Groups |

aprean3 | Datasets from Draper and Smith "Applied Regression Analysis" (3rd Ed., 1998) |

apricom | Tools for the a Priori Comparison of Regression Modelling Strategies |

aprof | Amdahl's Profiler, Directed Optimization Made Easy |

APSIM | General Utility Functions for the 'Agricultural Production Systems Simulator' |

APSIMBatch | Analysis the output of Apsim software |

apsimr | Edit, Run and Evaluate APSIM Simulations Easily Using R |

apsrtable | apsrtable model-output formatter for social science |

apt | Asymmetric Price Transmission |

aptg | Automatic Phylogenetic Tree Generator |

APtools | Average Positive Predictive Values (AP) for Binary Outcomes and Censored Event Times |

apTreeshape | Analyses of Phylogenetic Treeshape |

aqfig | Functions to help display air quality model output and monitoring data |

aqp | Algorithms for Quantitative Pedology |

aqr | Interface methods to use with an ActiveQuant Master Server |

AquaEnv | Integrated Development Toolbox for Aquatic Chemical Model Generation |

AR | Another Look at the Acceptance-Rejection Method |

AR1seg | Segmentation of an autoregressive Gaussian process of order 1 |

arabicStemR | Arabic Stemmer for Text Analysis |

ArArRedux | Rigorous Data Reduction and Error Propagation of Ar40 / Ar39 Data |

arc | Association Rule Classification |

ARCensReg | Fitting Univariate Censored Linear Regression Model with Autoregressive Errors |

ArchaeoChron | Bayesian Modeling of Archaeological Chronologies |

ArchaeoPhases | Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal' |

archdata | Example Datasets from Archaeological Research |

archetypes | Archetypal Analysis |

archiDART | Plant Root System Architecture Analysis Using DART and RSML Files |

archivist | Tools for Storing, Restoring and Searching for R Objects |

archivist.github | Tools for Archiving, Managing and Sharing R Objects via GitHub |

ArCo | Artificial Counterfactual Package |

ArDec | Time series autoregressive-based decomposition |

areaplot | Plot Stacked Areas and Confidence Bands as Filled Polygons |

arf3DS4 | Activated Region Fitting, fMRI data analysis (3D) |

arfima | Fractional ARIMA (and Other Long Memory) Time Series Modeling |

ArfimaMLM | Arfima-MLM Estimation For Repeated Cross-Sectional Data |

argon2 | Secure Password Hashing |

argosfilter | Argos locations filter |

argparse | Command Line Optional and Positional Argument Parser |

argparser | Command-Line Argument Parser |

ArgumentCheck | Improved Communication to Users with Respect to Problems in Function Arguments |

ARHT | Adaptable Regularized Hotelling's T^2 Test for High-Dimensional Data |

ari | Automated R Instructor |

aricode | Efficient Computations of Standard Clustering Comparison Measures |

arm | Data Analysis Using Regression and Multilevel/Hierarchical Models |

arnie | "Arnie" box office records 1982-2014 |

AROC | Covariate-Adjusted Receiver Operating Characteristic Curve Inference |

aroma.affymetrix | Analysis of Large Affymetrix Microarray Data Sets |

aroma.apd | A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated] |

aroma.cn | Copy-Number Analysis of Large Microarray Data Sets |

aroma.core | Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework |

Arothron | Geometric Morphometrics Analyses |

ARPobservation | Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes |

aRpsDCA | Arps Decline Curve Analysis in R |

arrangements | Fast Generators and Iterators for Permutations, Combinations and Partitions |

arrApply | Apply a Function to a Margin of an Array |

ArrayBin | Binarization of numeric data arrays |

arrayhelpers | Convenience Functions for Arrays |

ars | Adaptive Rejection Sampling |

arsenal | An Arsenal of 'R' Functions for Large-Scale Statistical Summaries |

ART | Aligned Rank Transform for Nonparametric Factorial Analysis |

artfima | ARTFIMA Model Estimation |

ARTIVA | Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model |

ARTool | Aligned Rank Transform |

ARTP | Gene and Pathway p-Values Computed using the Adaptive Rank Truncated Product |

ARTP2 | Pathway and Gene-Level Association Test |

arules | Mining Association Rules and Frequent Itemsets |

arulesCBA | Classification Based on Association Rules |

arulesNBMiner | Mining NB-Frequent Itemsets and NB-Precise Rules |

arulesSequences | Mining Frequent Sequences |

arulesViz | Visualizing Association Rules and Frequent Itemsets |

aRxiv | Interface to the arXiv API |

asaur | Data Sets for "Applied Survival Analysis Using R"" |

asbio | A Collection of Statistical Tools for Biologists |

ascii | Export R objects to several markup languages |

asciiruler | Render an ASCII Ruler |

asciiSetupReader | Reads 'SPSS' and 'SAS' Files from ASCII Data Files (.txt) and Setup Files (.sps or .sas) |

asd | Simulations for Adaptive Seamless Designs |

asdreader | Reading ASD Binary Files in R |

ASGS.foyer | Interface to the Australian Statistical Geography Standard |

ash | David Scott's ASH Routines |

ashr | Methods for Adaptive Shrinkage, using Empirical Bayes |

asht | Applied Statistical Hypothesis Tests |

AsioHeaders | 'Asio' C++ Header Files |

ASIP | Automated Satellite Image Processing |

aslib | Interface to the Algorithm Selection Benchmark Library |

ASMap | Linkage Map Construction using the MSTmap Algorithm |

asnipe | Animal Social Network Inference and Permutations for Ecologists |

aspace | A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns |

ASPBay | Bayesian Inference on Causal Genetic Variants using Affected Sib-Pairs Data |

aSPC | An Adaptive Sum of Powered Correlation Test (aSPC) for Global Association Between Two Random Vectors |

aspect | A General Framework for Multivariate Analysis with Optimal Scaling |

aspi | Analysis of Symmetry of Parasitic Infections |

aSPU | Adaptive Sum of Powered Score Test |

asremlPlus | Augments the Use of 'ASReml-R' in Fitting Mixed Models |

ASSA | Applied Singular Spectrum Analysis (ASSA) |

AssayCorrector | Detection and Correction of Spatial Bias in HTS Screens |

assertable | Verbose Assertions for Tabular Data (Data.frames and Data.tables) |

assertive | Readable Check Functions to Ensure Code Integrity |

assertive.base | A Lightweight Core of the 'assertive' Package |

assertive.code | Assertions to Check Properties of Code |

assertive.data | Assertions to Check Properties of Data |

assertive.data.uk | Assertions to Check Properties of Strings |

assertive.data.us | Assertions to Check Properties of Strings |

assertive.datetimes | Assertions to Check Properties of Dates and Times |

assertive.files | Assertions to Check Properties of Files |

assertive.matrices | Assertions to Check Properties of Matrices |

assertive.models | Assertions to Check Properties of Models |

assertive.numbers | Assertions to Check Properties of Numbers |

assertive.properties | Assertions to Check Properties of Variables |

assertive.reflection | Assertions for Checking the State of R |

assertive.sets | Assertions to Check Properties of Sets |

assertive.strings | Assertions to Check Properties of Strings |

assertive.types | Assertions to Check Types of Variables |

assertr | Assertive Programming for R Analysis Pipelines |

assertthat | Easy Pre and Post Assertions |

AssetCorr | Estimating Asset Correlations from Default Data |

AssetPricing | Optimal Pricing of Assets with Fixed Expiry Date |

assignPOP | Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework |

assist | A Suite of R Functions Implementing Spline Smoothing Techniques |

ASSISTant | Adaptive Subgroup Selection in Group Sequential Trials |

AssocAFC | Allele Frequency Comparison |

assocInd | Implements New and Existing Association Indices for Constructing Animal Social Networks |

AssocTests | Genetic Association Studies |

assortnet | Calculate the Assortativity Coefficient of Weighted and Binary Networks |

AssotesteR | Statistical Tests for Genetic Association Studies |

aster | Aster Models |

aster2 | Aster Models |

astro | Astronomy Functions, Tools and Routines |

astrochron | A Computational Tool for Astrochronology |

astrodatR | Astronomical Data |

astroFns | Astronomy: time and position functions, misc. utilities |

astrolibR | Astronomy Users Library |

astsa | Applied Statistical Time Series Analysis |

asus | Adaptive SURE Thresholding Using Side Information |

asVPC | Average Shifted Visual Predictive Checks |

asymLD | Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data |

asymmetry | Multidimensional Scaling of Asymmetric Data |

asympTest | A Simple R Package for Classical Parametric Statistical Tests and Confidence Intervals in Large Samples |

AsynchLong | Regression Analysis of Sparse Asynchronous Longitudinal Data |

asypow | Calculate Power Utilizing Asymptotic Likelihood Ratio Methods |

ATE | Inference for Average Treatment Effects using Covariate Balancing |

AtelieR | A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests |

atlantistools | Process and Visualise Output from Atlantis Models |

atlas | Stanford 'ATLAS' Search Engine API |

atmcmc | Automatically Tuned Markov Chain Monte Carlo |

ATmet | Advanced Tools for Metrology |

AtmRay | Acoustic Traveltime Calculations for 1-D Atmospheric Models |

ATR | Alternative Tree Representation |

aTSA | Alternative Time Series Analysis |

atsd | Support Querying Axibase Time-Series Database |

attempt | Easy Condition Handling |

attrCUSUM | Tools for Attribute VSI CUSUM Control Chart |

attribrisk | Population Attributable Risk |

atus | American Time Use Survey Data |

AUC | Threshold independent performance measures for probabilistic classifiers |

aucm | AUC Maximization |

AUCRF | Variable Selection with Random Forest and the Area Under the Curve |

auctestr | Statistical Testing for AUC Data |

audio | Audio Interface for R |

audiolyzR | audiolyzR: Give your data a listen |

audit | Bounds for Accounting Populations |

auditor | Model Audit - Verification, Validation, and Error Analysis |

augmentedRCBD | Analysis of Augmented Randomised Complete Block Designs |

augSIMEX | Analysis of Data with Mixed Measurement Error and Misclassification in Covariates |

auk | eBird Data Extraction and Processing with AWK |

aurelius | Generates PFA Documents from R Code and Optionally Runs Them |

AurieLSHGaussian | Creates a Neighbourhood Using Locality Sensitive Hashing for Gaussian Projections |

auRoc | Various Methods to Estimate the AUC |

AUtests | Approximate Unconditional and Permutation Tests |

auto.pca | Automatic Variable Reduction Using Principal Component Analysis |

autoBagging | Learning to Rank Bagging Workflows with Metalearning |

AutoDeskR | An Interface to the 'AutoDesk' 'API' Platform |

autoencoder | Sparse Autoencoder for Automatic Learning of Representative Features from Unlabeled Data |

autoFRK | Automatic Fixed Rank Kriging |

autoimage | Multiple Heat Maps for Projected Coordinates |

automagic | Automagically Document and Install Packages Necessary to Run R Code |

automap | Automatic interpolation package |

AutoModel | Automated Hierarchical Multiple Regression with Assumptions Checking |

automultinomial | Autologistic and Automultinomial Spatial Regression and Variable Selection |

autoplotly | Automatic Generation of Interactive Visualizations for Statistical Results |

Autoplotprotein | Development of Visualization Tools for Protein Sequence |

autopls | Partial Least Squares Regression with Backward Selection of Predictors |

AutoregressionMDE | Minimum Distance Estimation in Autoregressive Model |

AutoSEARCH | General-to-Specific (GETS) Modelling |

autoshiny | Automatic Transformation of an 'R' Function into a 'shiny' App |

autothresholdr | An R Port of the 'ImageJ' Plugin 'Auto Threshold' |

autovarCore | Automated Vector Autoregression Models and Networks |

available | Check if the Title of a Package is Available, Appropriate and Interesting |

averisk | Calculation of Average Population Attributable Fractions and Confidence Intervals |

aVirtualTwins | Adaptation of Virtual Twins Method from Jared Foster |

AWR | 'AWS' Java 'SDK' for R |

AWR.Athena | 'AWS' Athena 'DBI' Wrapper |

AWR.Kinesis | Amazon 'Kinesis' Consumer Application for Stream Processing |

AWR.KMS | A Simple Client to the 'AWS' Key Management Service |

aws | Adaptive Weights Smoothing |

aws.alexa | Client for the Amazon Alexa Web Information Services API |

aws.cloudtrail | AWS CloudTrail Client Package |

aws.comprehend | 'AWS Comprehend' Client Package |

aws.ec2metadata | Get EC2 Instance Metadata |

aws.iam | AWS IAM Client Package |

aws.lambda | AWS Lambda Client Package |

aws.polly | Client for AWS Polly |

aws.s3 | 'AWS S3' Client Package |

aws.ses | AWS SES Client Package |

aws.signature | Amazon Web Services Request Signatures |

aws.sns | AWS SNS Client Package |

aws.sqs | AWS SQS Client Package |

aws.transcribe | Client for 'AWS Transcribe' |

aws.translate | Client for 'AWS Translate' |

awsjavasdk | Boilerplate R Access to the Amazon Web Services ('AWS') Java SDK |

awsMethods | Class and Methods Definitions for Packages 'aws', 'adimpro', 'fmri', 'dwi' |

awspack | Amazon Web Services Bundle Package |

AzureML | Interface with Azure Machine Learning Datasets, Experiments and Web Services |

B2Z | Bayesian Two-Zone Model |

b6e6rl | Adaptive differential evolution, b6e6rl variant |

babar | Bayesian Bacterial Growth Curve Analysis in R |

babel | Ribosome Profiling Data Analysis |

BaBooN | Bayesian Bootstrap Predictive Mean Matching - Multiple and Single Imputation for Discrete Data |

babynames | US Baby Names 1880-2015 |

BACA | Bubble Chart to Compare Biological Annotations by using DAVID |

BacArena | Modeling Framework for Cellular Communities in their Environments |

BACCO | Bayesian Analysis of Computer Code Output (BACCO) |

BACCT | Bayesian Augmented Control for Clinical Trials |

backblazer | Bindings to the Backblaze B2 API |

backpipe | Backward Pipe (Right-to-Left) Operator |

backports | Reimplementations of Functions Introduced Since R-3.0.0 |

backShift | Learning Causal Cyclic Graphs from Unknown Shift Interventions |

backtest | Exploring Portfolio-Based Conjectures About Financial Instruments |

BACprior | Choice of the Hyperparameter Omega in the Bayesian Adjustment for Confounding (BAC) Algorithm |

bacr | Bayesian Adjustment for Confounding |

badgecreatr | Create Badges for 'Travis', 'Repostatus' 'Codecov.io' Etc in Github Readme |

badger | Badge for R Package |

BAEssd | Bayesian Average Error approach to Sample Size Determination |

bagRboostR | Ensemble bagging and boosting classifiers |

bairt | Bayesian Analysis of Item Response Theory Models |

baitmet | Library Driven Compound Profiling in Gas Chromatography - Mass Spectrometry Data |

BalanceCheck | Balance Check for Multiple Covariates in Matched Observational Studies |

BalancedSampling | Balanced and Spatially Balanced Sampling |

BALCONY | Better ALignment CONsensus analYsis |

Ball | Statistical Inference and Sure Independence Screening via Ball Statistics |

ballr | Access to Current and Historical Basketball Data |

BaM | Functions and Datasets for Books by Jeff Gill |

BAMBI | Bivariate Angular Mixture Models |

bamboo | Protein Secondary Structure Prediction Using the Bamboo Method |

bamdit | Bayesian Meta-Analysis of Diagnostic Test Data |

bamlss | Bayesian Additive Models for Location Scale and Shape (and Beyond) |

BAMMtools | Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees |

bandit | Functions for simple A/B split test and multi-armed bandit analysis |

BANEScarparkinglite | Working with Car Parking Data for Bath and North East Somerset |

bang | Bayesian Analysis, No Gibbs |

bannerCommenter | Make Banner Comments with a Consistent Format |

BANOVA | Hierarchical Bayesian ANOVA Models |

banR | R Client for the BAN API |

banter | BioAcoustic EveNT ClassifiER |

banxicoR | Download Data from the Bank of Mexico |

bapred | Batch Effect Removal and Addon Normalization (in Phenotype Prediction using Gene Data) |

BaPreStoPro | Bayesian Prediction of Stochastic Processes |

BarBorGradient | Function Minimum Approximator |

barcode | Barcode distribution plots |

BarcodingR | Species Identification using DNA Barcodes |

Barnard | Barnard's Unconditional Test |

BART | Bayesian Additive Regression Trees |

bartMachine | Bayesian Additive Regression Trees |

bartMachineJARs | bartMachine JARs |

Barycenter | Regularized Wasserstein Distances and Barycenters |

BAS | Bayesian Variable Selection and Model Averaging using Bayesian Adaptive Sampling |

basad | Bayesian Variable Selection with Shrinking and Diffusing Priors |

base2grob | Convert Base Plot to 'grob' Object |

base64 | Base64 Encoder and Decoder |

base64enc | Tools for base64 encoding |

base64url | Fast and URL-Safe Base64 Encoder and Decoder |

baseballDBR | Sabermetrics and Advanced Baseball Statistics |

basefun | Infrastructure for Computing with Basis Functions |

baseline | Baseline Correction of Spectra |

basicspace | Recovering a Basic Space from Issue Scales |

basictabler | Construct Rich Tables for Output to 'HTML'/'Excel' |

basicTrendline | Add Trendline of Basic Regression Models to Plot |

BASiNET | Classification of RNA Sequences using Complex Network Theory |

BASIX | BASIX: An efficient C/C++ toolset for R |

BASS | Bayesian Adaptive Spline Surfaces |

BaSTA | Age-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data |

bastah | Big Data Statistical Analysis for High-Dimensional Models |

BAT | Biodiversity Assessment Tools |

batade | HTML reports and so on |

batch | Batching Routines in Parallel and Passing Command-Line Arguments to R |

BatchExperiments | Statistical Experiments on Batch Computing Clusters |

BatchGetSymbols | Downloads and Organizes Financial Data for Multiple Tickers |

BatchJobs | Batch Computing with R |

BatchMap | Software for the Creation of High Density Linkage Maps in Outcrossing Species |

batchmeans | Consistent Batch Means Estimation of Monte Carlo Standard Errors |

batchtools | Tools for Computation on Batch Systems |

BaTFLED3D | Bayesian Tensor Factorization Linked to External Data |

batman | Convert Categorical Representations of Logicals to Actual Logicals |

batteryreduction | An R Package for Data Reduction by Battery Reduction |

BAwiR | Analysis of Basketball Data |

BayClone2 | Bayesian Feature Allocation Model for Tumor Heterogeneity |

bayesAB | Fast Bayesian Methods for AB Testing |

bayesammi | Bayesian Estimation of the Additive Main Effects and Multiplicative Interaction Model |

BayesBD | Bayesian Inference for Image Boundaries |

BayesBinMix | Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions |

bayesbio | Miscellaneous Functions for Bioinformatics and Bayesian Statistics |

bayesboot | An Implementation of Rubin's (1981) Bayesian Bootstrap |

bayesCL | Bayesian Inference on a GPU using OpenCL |

BayesCombo | Bayesian Evidence Combination |

BayesComm | Bayesian Community Ecology Analysis |

bayescount | Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC |

BayesCR | Bayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions |

BayesDA | Functions and Datasets for the book "Bayesian Data Analysis" |

bayesDccGarch | The Bayesian Dynamic Conditional Correlation GARCH Model |

BAYESDEF | Bayesian Analysis of DSD |

bayesDem | Graphical User Interface for bayesTFR, bayesLife and bayesPop |

bayesDP | Tools for the Bayesian Discount Prior Function |

BayesESS | Determining Effective Sample Size |

BayesFactor | Computation of Bayes Factors for Common Designs |

BayesFM | Bayesian Inference for Factor Modeling |

bayesGARCH | Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations |

bayesGDS | Scalable Rejection Sampling for Bayesian Hierarchical Models |

BayesGESM | Bayesian Analysis of Generalized Elliptical Semi-Parametric Models and Flexible Measurement Error Models |

BayesGOF | Bayesian Modeling via Goodness-of-Fit |

BayesH | Bayesian Regression Model with Mixture of Two Scaled Inverse Chi Square as Hyperprior |

BayesianAnimalTracker | Bayesian Melding of GPS and DR Path for Animal Tracking |

Bayesianbetareg | Bayesian Beta regression: joint mean and precision modeling |

bayesianETAS | Bayesian Estimation of the ETAS Model for Earthquake Occurrences |

BayesianGLasso | Bayesian Graphical Lasso |

BayesianNetwork | Bayesian Network Modeling and Analysis |

BayesianTools | General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics |

bayesImageS | Bayesian Methods for Image Segmentation using a Potts Model |

BayesLCA | Bayesian Latent Class Analysis |

bayesLife | Bayesian Projection of Life Expectancy |

bayeslm | Efficient Sampling for Gaussian Linear Regression with Arbitrary Priors |

bayesloglin | Bayesian Analysis of Contingency Table Data |

bayeslongitudinal | Adjust Longitudinal Regression Models Using Bayesian Methodology |

bayesLopod | Bayesian Inference of Landscape Occupancy from Presence-Only Data |

bayesm | Bayesian Inference for Marketing/Micro-Econometrics |

BayesMAMS | Designing Bayesian Multi-Arm Multi-Stage Studies |

BayesMed | Default Bayesian Hypothesis Tests for Correlation, Partial Correlation, and Mediation |

bayesmeta | Bayesian Random-Effects Meta-Analysis |

bayesmix | Bayesian Mixture Models with JAGS |

BayesMixSurv | Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification |

BayesNetBP | Bayesian Network Belief Propagation |

BayesNI | BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints |

BayesPieceHazSelect | Variable Selection in a Hierarchical Bayesian Model for a Hazard Function |

BayesPiecewiseICAR | Hierarchical Bayesian Model for a Hazard Function |

bayesplot | Plotting for Bayesian Models |

bayesPop | Probabilistic Population Projection |

bayespref | Hierarchical Bayesian analysis of ecological count data |

bayesQR | Bayesian Quantile Regression |

BayesRS | Bayes Factors for Hierarchical Linear Models with Continuous Predictors |

bayess | Bayesian Essentials with R |

BayesS5 | Bayesian Variable Selection Using Simplified Shotgun Stochastic Search with Screening (S5) |

BayesSAE | Bayesian Analysis of Small Area Estimation |

BayesSingleSub | Computation of Bayes factors for interrupted time-series designs |

BayesSpec | Bayesian Spectral Analysis Techniques |

BayesSummaryStatLM | MCMC Sampling of Bayesian Linear Models via Summary Statistics |

bayesSurv | Bayesian Survival Regression with Flexible Error and Random Effects Distributions |

bayesTFR | Bayesian Fertility Projection |

BayesTree | Bayesian Additive Regression Trees |

BayesTreePrior | Bayesian Tree Prior Simulation |

BayesTwin | Bayesian Analysis of Item-Level Twin Data |

BayesValidate | BayesValidate Package |

BayesVarSel | Bayes Factors, Model Choice and Variable Selection in Linear Models |

BayesX | R Utilities Accompanying the Software Package BayesX |

BayesXsrc | R Package Distribution of the BayesX C++ Sources |

BayHap | Bayesian analysis of haplotype association using Markov Chain Monte Carlo |

BayHaz | R Functions for Bayesian Hazard Rate Estimation |

BaylorEdPsych | R Package for Baylor University Educational Psychology Quantitative Courses |

BayLum | Chronological Bayesian Models Integrating Optically Stimulated Luminescence and Radiocarbon Age Dating |

bayou | Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies |

BaySIC | Bayesian Analysis of Significantly Mutated Genes in Cancer |

baystability | Bayesian Stability Analysis of Genotype by Environment Interaction (GEI) |

BAYSTAR | On Bayesian analysis of Threshold autoregressive model (BAYSTAR) |

bazar | Miscellaneous Basic Functions |

BB | Solving and Optimizing Large-Scale Nonlinear Systems |

bbefkr | Bayesian bandwidth estimation and semi-metric selection for the functional kernel regression with unknown error density |

bbemkr | Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error |

BBEST | Bayesian Estimation of Incoherent Neutron Scattering Backgrounds |

BBI | Benthic Biotic Indices Calculation from Composition Data |

BBmisc | Miscellaneous Helper Functions for B. Bischl |

bbmle | Tools for General Maximum Likelihood Estimation |

BBMM | Brownian bridge movement model |

BBMV | Models for Continuous Traits Evolving in Macroevolutionary Landscapes of any Shape |

bbo | Biogeography-Based Optimization |

BBRecapture | Bayesian Behavioural Capture-Recapture Models |

bbw | Blocked Weighted Bootstrap |

bc3net | Gene Regulatory Network Inference with Bc3net |

BCA | Business and Customer Analytics |

BCBCSF | Bias-Corrected Bayesian Classification with Selected Features |

BCC1997 | Calculation of Option Prices Based on a Universal Solution |

BCDating | Business Cycle Dating and Plotting Tools |

BcDiag | Diagnostics Plots for Bicluster Data |

BCE | Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data |

BCEA | Bayesian Cost Effectiveness Analysis |

BCEE | The Bayesian Causal Effect Estimation Algorithm |

BCellMA | B Cell Receptor Somatic Hyper Mutation Analysis |

bcgam | Bayesian Constrained Generalised Linear Models |

BCgee | Bias-Corrected Estimates for Generalized Linear Models for Dependent Data |

Bchron | Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling |

Bclim | Bayesian Palaeoclimate Reconstruction from Pollen Data |

bclust | Bayesian Hierarchical Clustering Using Spike and Slab Models |

BClustLonG | A Dirichlet Process Mixture Model for Clustering Longitudinal Gene Expression Data |

bcmaps | Map Layers and Spatial Utilities for British Columbia |

bcp | Bayesian Analysis of Change Point Problems |

bcpa | Behavioral change point analysis of animal movement |

bcpmeta | Bayesian Multiple Changepoint Detection Using Metadata |

BCRA | Breast Cancer Risk Assessment |

bcRep | Advanced Analysis of B Cell Receptor Repertoire Data |

bcrm | Bayesian Continual Reassessment Method for Phase I Dose-Escalation Trials |

bcROCsurface | Bias-Corrected Methods for Estimating the ROC Surface of Continuous Diagnostic Tests |

bcrypt | 'Blowfish' Password Hashing Algorithm |

BCSub | A Bayesian Semiparametric Factor Analysis Model for Subtype Identification (Clustering) |

bcv | Cross-Validation for the SVD (Bi-Cross-Validation) |

bda | Density Estimation for Grouped Data |

bde | Bounded Density Estimation |

BDgraph | Bayesian Structure Learning in Graphical Models using Birth-Death MCMC |

bdlp | Transparent and Reproducible Artificial Data Generation |

bdots | Bootstrapped Differences of Time Series |

bdpopt | Optimisation of Bayesian Decision Problems |

bdpv | Inference and design for predictive values in binary diagnostic tests |

bdscale | Remove Weekends and Holidays from ggplot2 Axes |

bdsmatrix | Routines for Block Diagonal Symmetric Matrices |

bdvis | Biodiversity Data Visualizations |

BDWreg | Bayesian Inference for Discrete Weibull Regression |

bdynsys | Bayesian Dynamical System Model |

BE | Bioequivalence Study Data Analysis |

bea.R | Bureau of Economic Analysis API |

BEACH | Biometric Exploratory Analysis Creation House |

beadarrayFilter | Bead filtering for Illumina bead arrays |

beadarrayMSV | Analysis of Illumina BeadArray SNP data including MSV markers |

beadplexr | Analysis of Multiplex Cytometric Bead Assays |

beam | Fast Bayesian Inference in Large Gaussian Graphical Models |

beanplot | Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot) |

beanz | Bayesian Analysis of Heterogeneous Treatment Effect |

beast | Bayesian Estimation of Change-Points in the Slope of Multivariate Time-Series |

BEDASSLE | Quantifies effects of geo/eco distance on genetic differentiation |

BEDMatrix | Extract Genotypes from a PLINK .bed File |

bedr | Genomic Region Processing using Tools Such as 'BEDTools', 'BEDOPS' and 'Tabix' |

beepr | Easily Play Notification Sounds on any Platform |

beeswarm | The Bee Swarm Plot, an Alternative to Stripchart |

beginr | Functions for R Beginners |

behavr | Canonical Data Structure for Behavioural Data |

belex | Download Historical Data from the Belgrade Stock Exchange |

belg | Boltzmann Entropy of a Landscape Gradient |

bench | High Precision Timing of R Expressions |

benchden | 28 benchmark densities from Berlinet/Devroye (1994) |

benchmark | Benchmark Experiments Toolbox |

Benchmarking | Benchmark and Frontier Analysis Using DEA and SFA |

benchmarkme | Crowd Sourced System Benchmarks |

benchmarkmeData | Data Set for the 'benchmarkme' Package |

benchr | High Precise Measurement of R Expressions Execution Time |

benford.analysis | Benford Analysis for Data Validation and Forensic Analytics |

BenfordTests | Statistical Tests for Evaluating Conformity to Benford's Law |

bentcableAR | Bent-Cable Regression for Independent Data or Autoregressive Time Series |

benthos | Marine Benthic Ecosystem Analysis |

BEQI2 | Benthic Ecosystem Quality Index 2 |

ber | Batch Effects Removal |

Bergm | Bayesian Exponential Random Graph Models |

berryFunctions | Function Collection Related to Plotting and Hydrology |

BeSS | Best Subset Selection in Linear, Logistic and CoxPH Models |

Bessel | Bessel – Bessel Functions Computations and Approximations |

BEST | Bayesian Estimation Supersedes the t-Test |

bestglm | Best Subset GLM and Regression Utilities |

bestNormalize | Normalizing Transformation Functions |

BetaBit | Mini Games from Adventures of Beta and Bit |

betaboost | Boosting Beta Regression |

betacal | Beta Calibration |

betafam | Detecting rare variants for quantitative traits using nuclear families |

betalink | Beta-Diversity of Species Interactions |

betapart | Partitioning Beta Diversity into Turnover and Nestedness Components |

betaper | Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data |

betareg | Beta Regression |

betas | Standardized Beta Coefficients |

betategarch | Simulation, Estimation and Forecasting of Beta-Skew-t-EGARCH Models |

bethel | Bethel's algorithm |

BETS | Brazilian Economic Time Series |

BeviMed | Bayesian Evaluation of Variant Involvement in Mendelian Disease |

beyondWhittle | Bayesian Spectral Inference for Stationary Time Series |

bezier | Bezier Curve and Spline Toolkit |

bfa | Bayesian Factor Analysis |

bfast | Breaks For Additive Season and Trend (BFAST) |

bfp | Bayesian Fractional Polynomials |

bfw | Bayesian Framework for Computational Modeling |

BGData | A Suite of Packages for Analysis of Big Genomic Data |

bgeva | Binary Generalized Extreme Value Additive Models |

BGGE | Bayesian Genomic Linear Models Applied to GE Genome Selection |

BGLR | Bayesian Generalized Linear Regression |

bgmfiles | Example BGM Files for the Atlantis Ecosystem Model |

bgmm | Gaussian Mixture Modeling Algorithms and the Belief-Based Mixture Modeling |

BGPhazard | Markov Beta and Gamma Processes for Modeling Hazard Rates |

BGSIMD | Block Gibbs Sampler with Incomplete Multinomial Distribution |

bgsmtr | Bayesian Group Sparse Multi-Task Regression |

BH | Boost C++ Header Files |

Bhat | General likelihood exploration |

BHH2 | Useful Functions for Box, Hunter and Hunter II |

bhm | Biomarker Threshold Models |

BHMSMAfMRI | Bayesian Hierarchical Multi-Subject Multiscale Analysis of Functional MRI Data |

bhrcr | Bayesian Hierarchical Regression on Clearance Rates in the Presence of Lag and Tail Phases |

BHTSpack | Bayesian Multi-Plate High-Throughput Screening of Compounds |

biasbetareg | Bias correction of the parameter estimates of the beta regression model |

BiasedUrn | Biased Urn Model Distributions |

bib2df | Parse a BibTeX File to a data.frame |

BiBitR | R Wrapper for Java Implementation of BiBit |

bibliometrix | An R-Tool for Comprehensive Science Mapping Analysis |

BibPlots | Plot Functions for Use in Bibliometrics |

bibtex | Bibtex Parser |

biclust | BiCluster Algorithms |

BICORN | Integrative Inference of De Novo Cis-Regulatory Modules |

BiDAG | Bayesian Inference for Directed Acyclic Graphs (BiDAG) |

BiDimRegression | Calculates the Bidimensional Regression Between Two 2D Configurations |

BIEN | Tools for Accessing the Botanical Information and Ecology Network Database |

bife | Binary Choice Models with Fixed Effects |

BIFIEsurvey | Tools for Survey Statistics in Educational Assessment |

BiG | Bayesian Aggregation in Genomic Applications |

bigalgebra | BLAS routines for native R matrices and big.matrix objects |

biganalytics | Utilities for 'big.matrix' Objects from Package 'bigmemory' |

bigchess | Read, Manipulate and Explore Chess PGN Files |

bigdatadist | Distances for Machine Learning and Statistics in the Context of Big Data |

BIGDAWG | Case-Control Analysis of Multi-Allelic Loci |

bigFastlm | Fast Linear Models for Objects from the 'bigmemory' Package |

bigGP | Distributed Gaussian Process Calculations |

bigIntegerAlgos | R Tool for Factoring Big Integers |

bigKRLS | Optimized Kernel Regularized Least Squares |

BIGL | Biochemically Intuitive Generalized Loewe Model |

biglars | Scalable Least-Angle Regression and Lasso |

biglasso | Extending Lasso Model Fitting to Big Data |

bigleaf | Physical and Physiological Ecosystem Properties from Eddy Covariance Data |

biglm | bounded memory linear and generalized linear models |

bigmatch | Making Optimal Matching Size-Scalable Using Optimal Calipers |

bigmemory | Manage Massive Matrices with Shared Memory and Memory-Mapped Files |

bigmemory.sri | A shared resource interface for Bigmemory Project packages |

bigml | Bindings for the BigML API |

bigQueryR | Interface with Google BigQuery with Shiny Compatibility |

BigQuic | Big Quadratic Inverse Covariance Estimation |

bigReg | Generalized Linear Models (GLM) for Large Data Sets |

bigrquery | An Interface to Google's 'BigQuery' 'API' |

BigSEM | Constructing Large Systems of Structural Equations |

bigsplines | Smoothing Splines for Large Samples |

bigstep | Stepwise Selection for Large Data Sets |

bigtabulate | Table, Apply, and Split Functionality for Matrix and 'big.matrix' Objects |

bigtcr | Nonparametric Analysis of Bivariate Gap Time with Competing Risks |

bigtime | Sparse Estimation of Large Time Series Models |

BigTSP | Top Scoring Pair based methods for classification |

BigVAR | Dimension Reduction Methods for Multivariate Time Series |

bikedata | Download and Aggregate Data from Public Hire Bicycle Systems |

bikeshare14 | Bay Area Bike Share Trips in 2014 |

bild | BInary Longitudinal Data |

billboard | Contains Data of Billboard Hot 100 Songs |

billboarder | Create Interactive Chart with the JavaScript 'Billboard' Library |

bimetallic | Power for SNP analyses using silver standard cases |

bimixt | Estimates Mixture Models for Case-Control Data |

BimodalIndex | The Bimodality Index |

Binarize | Binarization of One-Dimensional Data |

BinarybalancedCut | Threshold Cut Point of Probability for a Binary Classifier Model |

BinaryEMVS | Variable Selection for Binary Data Using the EM Algorithm |

BinaryEPPM | Mean and Variance Modeling of Binary Data |

binaryGP | Fit and Predict a Gaussian Process Model with (Time-Series) Binary Response |

binaryLogic | Binary Logic |

BINCOR | Estimate the Correlation Between Two Irregular Time Series |

binda | Multi-Class Discriminant Analysis using Binary Predictors |

bindata | Generation of Artificial Binary Data |

bindr | Parametrized Active Bindings |

bindrcpp | An 'Rcpp' Interface to Active Bindings |

binequality | Methods for Analyzing Binned Income Data |

binford | Binford's Hunter-Gatherer Data |

bingat | Binary Graph Analysis Tools |

binGroup | Evaluation and Experimental Design for Binomial Group Testing |

binhf | Haar-Fisz Functions for Binomial Data |

binMto | Many-to-One Comparisons of Proportions |

binnednp | Nonparametric Estimation for Interval-Grouped Data |

binneR | Spectral Processing for High Resolution Flow Infusion Mass Spectrometry |

BinNonNor | Data Generation with Binary and Continuous Non-Normal Components |

BinNor | Simultaneous Generation of Multivariate Binary and Normal Variates |

binom | Binomial Confidence Intervals For Several Parameterizations |

binomen | 'Taxonomic' Specification and Parsing Methods |

binomialcftp | Generates binomial random numbers via the coupling from the past algorithm |

binomlogit | Efficient MCMC for Binomial Logit Models |

binomSamSize | Confidence Intervals and Sample Size Determination for a Binomial Proportion under Simple Random Sampling and Pooled Sampling |

BinOrdNonNor | Concurrent Generation of Binary, Ordinal and Continuous Data |

BinQuasi | Analyzing Replicated ChIP Sequencing Data Using Quasi-Likelihood |

binr | Cut Numeric Values into Evenly Distributed Groups |

binseqtest | Exact Binary Sequential Designs and Analysis |

binsmooth | Generate PDFs and CDFs from Binned Data |

binst | Data Preprocessing, Binning for Classification and Regression |

bio.infer | Predict environmental conditions from biological observations |

bio3d | Biological Structure Analysis |

bioacoustics | Analyse Audio Recordings and Automatically Extract Animal Vocalizations |

BioCircos | Interactive Circular Visualization of Genomic Data using 'htmlwidgets' and 'BioCircos.js' |

BiocManager | Access the Bioconductor Project Package Repository |

Biocomb | Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis |

Biodem | Biodemography Functions |

BiodiversityR | Package for Community Ecology and Suitability Analysis |

BIOdry | Multilevel Modeling of Dendroclimatical Fluctuations |

biofiles | An Interface for GenBank/GenPept Flat Files |

BioFTF | Biodiversity Assessment Using Functional Tools |

biogas | Process Biogas Data and Predict Biogas Production |

biogeo | Point Data Quality Assessment and Coordinate Conversion |

BioGeoBEARS | BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts |

biogram | N-Gram Analysis of Biological Sequences |

Biograph | Explore Life Histories |

Bioi | Biological Image Analysis |

bioimagetools | Tools for Microscopy Imaging |

bioinactivation | Simulation of Dynamic Microbial Inactivation |

BioInstaller | Lightweight Biology Software Installer |

biolink | Create Hyperlinks to Biological Databases and Resources |

Biolinv | Modelling and Forecasting Biological Invasions |

BIOM.utils | Utilities for the BIOM (Biological Observation Matrix) Format |

BioMark | Find Biomarkers in Two-Class Discrimination Problems |

biomartr | Genomic Data Retrieval |

BIOMASS | Estimating Aboveground Biomass and Its Uncertainty in Tropical Forests |

biomod2 | Ensemble Platform for Species Distribution Modeling |

bionetdata | Biological and chemical data networks |

bioOED | Sensitivity Analysis and Optimum Experiment Design for Microbial Inactivation |

BioPET | Biomarker Prognostic Enrichment Tool |

bioplots | Visualization of Overlapping Results with Heatmap |

bioPN | Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets |

Bios2cor | From Biological Sequences and Simulations to Correlation Analysis |

bios2mds | From BIOlogical Sequences to MultiDimensional Scaling |

bioset | Convert a Matrix of Raw Values into Nice and Tidy Data |

biosignalEMG | Tools for Electromyogram Signals (EMG) Analysis |

BioStatR | Initiation ÃƒÂ la Statistique avec R |

biotic | Calculation of Freshwater Biotic Indices |

biotools | Tools for Biometry and Applied Statistics in Agricultural Science |

bipartite | Visualising Bipartite Networks and Calculating Some (Ecological) Indices |

biplotbootGUI | Bootstrap on Classical Biplots and Clustering Disjoint Biplot |

BiplotGUI | Interactive Biplots in R |

birdnik | Connector for the Wordnik API |

birdring | Methods to Analyse Ring Re-Encounter Data |

birk | MA Birk's Functions |

birtr | The R Package for "The Basics of Item Response Theory Using R" |

BIS | Programmatic Access to Bank for International Settlements Data |

bisect | Estimating Cell Type Composition from Methylation Sequencing Data |

bisectr | Tools to find bad commits with git bisect |

BiSEp | Toolkit to Identify Candidate Synthetic Lethality |

bisoreg | Bayesian Isotonic Regression with Bernstein Polynomials |

BisRNA | Analysis of RNA Cytosine-5 Methylation |

bit | A Class for Vectors of 1-Bit Booleans |

bit64 | A S3 Class for Vectors of 64bit Integers |

bitops | Bitwise Operations |

BiTrinA | Binarization and Trinarization of One-Dimensional Data |

bitrugs | Bayesian Inference of Transmission Routes Using Genome Sequences |

Bivariate.Pareto | Bivariate Pareto Models |

BivarP | Estimating the Parameters of Some Bivariate Distributions |

bivarRIpower | Sample size calculations for bivariate longitudinal data |

BivRegBLS | Tolerance Intervals and Errors-in-Variables Regressions in Method Comparison Studies |

bivrp | Bivariate Residual Plots with Simulation Polygons |

BivUnifBin | Generation of Bivariate Uniform Data and Its Relation to Bivariate Binary Data |

biwavelet | Conduct Univariate and Bivariate Wavelet Analyses |

biwt | Functions to compute the biweight mean vector and covariance & correlation matrices |

bizdays | Business Days Calculations and Utilities |

bjscrapeR | An API Wrapper for the Bureau of Justice Statistics (BJS) |

bkmr | Bayesian Kernel Machine Regression |

BKPC | Bayesian Kernel Projection Classifier |

blackbox | Black Box Optimization and Exploration of Parameter Space |

BlakerCI | Blaker's Binomial Confidence Limits |

BlandAltmanLeh | Plots (Slightly Extended) Bland-Altman Plots |

blandr | Bland-Altman Method Comparison |

blastula | Easily Send HTML Email Messages |

blatr | Send Emails Using 'Blat' for Windows |

Blaunet | Calculate and Analyze Blau Status for (Covert) Organizations |

blavaan | Bayesian Latent Variable Analysis |

BLCOP | Black-Litterman and Copula Opinion Pooling Frameworks |

blendedLink | A New Link Function that Blends Two Specified Link Functions |

blender | Analyze biotic homogenization of landscapes |

Blendstat | Joint Analysis of Experiments with Mixtures and Random Effects |

blink | Record Linkage for Empirically Motivated Priors |

blkbox | Data Exploration with Multiple Machine Learning Algorithms |

blkergm | Fitting block ERGM given the block structure on social networks |

blm | Binomial linear and linear-expit regression |

blme | Bayesian Linear Mixed-Effects Models |

blmeco | Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan" |

BLModel | Black-Litterman Posterior Distribution |

blob | A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') |

blockcluster | Coclustering Package for Binary, Categorical, Contingency and Continuous Data-Sets |

BlockCov | Estimation of Large Block Covariance Matrices |

BlockFeST | Bayesian Calculation of Region-Specific Fixation Index to Detect Local Adaptation |

blockmatrix | blockmatrix: Tools to solve algebraic systems with partitioned matrices |

BlockMessage | Creates strings that show a text message in 8 by 8 block letters |

blockmodeling | Generalized and Classical Blockmodeling of Valued Networks |

blockmodels | Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm |

blockrand | Randomization for block random clinical trials |

blocksdesign | Nested and Crossed Block Designs for Factorial, Fractional Factorial and Unstructured Treatment Sets |

blockseg | Two Dimensional Change-Points Detection |

blockTools | Block, Assign, and Diagnose Potential Interference in Randomized Experiments |

blogdown | Create Blogs and Websites with R Markdown |

blorr | Tools for Developing Binary Logistic Regression Models |

BLPestimatoR | Performs a BLP Demand Estimation |

BLR | Bayesian Linear Regression |

BLRPM | Stochastic Rainfall Generator Bartlett-Lewis Rectangular Pulse Model |

blsAPI | Request Data from the U.S. Bureau of Labor Statistics API |

blscrapeR | An API Wrapper for the Bureau of Labor Statistics (BLS) |

BLSM | Bayesian Latent Space Model |

BMA | Bayesian Model Averaging |

BMAmevt | Multivariate Extremes: Bayesian Estimation of the Spectral Measure |

bmd | Benchmark dose analysis for dose-response data |

bmem | Mediation analysis with missing data using bootstrap |

bmeta | Bayesian Meta-Analysis and Meta-Regression |

BMhyb | Hybrid Trait Evolution under Brownian Motion |

BMhyd | PCM for Hybridization |

BMisc | Miscellaneous Functions for Panel Data, Quantiles, and Printing Results |

Bmix | Bayesian Sampling for Stick-Breaking Mixtures |

bmixture | Bayesian Estimation for Finite Mixture of Distributions |

bmk | MCMC diagnostics package |

bmlm | Bayesian Multilevel Mediation |

bmmix | Bayesian multinomial mixture |

bmotif | Counting Motifs in Bipartite Networks |

bmp | Read Windows Bitmap (BMP) Images |

BMRBr | 'BMRB' File Downloader |

bmrm | Bundle Methods for Regularized Risk Minimization Package |

BMRV | Bayesian Models for Rare Variant Association Analysis |

BMS | Bayesian Model Averaging Library |

BMT | The BMT Distribution |

bnclassify | Learning Discrete Bayesian Network Classifiers from Data |

BNDataGenerator | Data Generator based on Bayesian Network Model |

bnlearn | Bayesian Network Structure Learning, Parameter Learning and Inference |

BNN | Bayesian Neural Network for High-Dimensional Nonlinear Variable Selection |

bnnSurvival | Bagged k-Nearest Neighbors Survival Prediction |

bnormnlr | Bayesian Estimation for Normal Heteroscedastic Nonlinear Regression Models |

BNPdensity | Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures |

BNPMediation | Bayesian Nonparametric Method for Mediation |

BNPMIXcluster | Bayesian Nonparametric Model for Clustering with Mixed Scale Variables |

bnpmr | Bayesian Monotonic Nonparametric Regression |

bnpsd | Simulate Genotypes from the BN-PSD Admixture Model |

BNPTSclust | A Bayesian Nonparametric Algorithm for Time Series Clustering |

BNSL | Bayesian Network Structure Learning |

BNSP | Bayesian Non- And Semi-Parametric Model Fitting |

bnspatial | Spatial Implementation of Bayesian Networks and Mapping |

bnstruct | Bayesian Network Structure Learning from Data with Missing Values |

boa | Bayesian Output Analysis Program (BOA) for MCMC |

BoardGames | Board Games and Tools for Building Board Games |

bodenmiller | Profilling of Peripheral Blood Mononuclear Cells using CyTOF |

BOG | Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions |

boilerpipeR | Interface to the Boilerpipe Java Library |

BOIN | Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials |

bold | Interface to Bold Systems API |

Bolstad | Functions for Elementary Bayesian Inference |

Bolstad2 | Bolstad functions |

BoltzMM | Boltzmann Machines with MM Algorithms |

bomrang | Australian Government Bureau of Meteorology Data from R |

BonEV | An Improved Multiple Testing Procedure for Controlling False Discovery Rates |

bookdown | Authoring Books and Technical Documents with R Markdown |

bookdownplus | Generate Varied Types of Books and Documents with R 'bookdown' Package |

BoolFilter | Optimal Estimation of Partially Observed Boolean Dynamical Systems |

BoolNet | Construction, Simulation and Analysis of Boolean Networks |

Boom | Bayesian Object Oriented Modeling |

BoomSpikeSlab | MCMC for Spike and Slab Regression |

boostmtree | Boosted Multivariate Trees for Longitudinal Data |

boostr | A modular framework to bag or boost any estimation procedure |

boostSeq | Optimized GWAS cohort subset selection for resequencing studies |

boot | Bootstrap Functions (Originally by Angelo Canty for S) |

bootcluster | Bootstrapping Estimates of Clustering Stability |

bootES | Bootstrap Effect Sizes |

bootLR | Bootstrapped Confidence Intervals for (Negative) Likelihood Ratio Tests |

BootMRMR | Bootstrap-MRMR Technique for Informative Gene Selection |

bootnet | Bootstrap Methods for Various Network Estimation Routines |

BootPR | Bootstrap Prediction Intervals and Bias-Corrected Forecasting |

bootRes | Bootstrapped Response and Correlation Functions |

bootruin | A Bootstrap Test for the Probability of Ruin in the Classical Risk Process |

bootspecdens | Testing equality of spectral densities |

bootsPLS | Bootstrap Subsamplings of Sparse Partial Least Squares - Discriminant Analysis for Classification and Signature Identification |

bootStepAIC | Bootstrap stepAIC |

bootstrap | Functions for the Book "An Introduction to the Bootstrap" |

bootSVD | Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data |

boottol | Bootstrap Tolerance Levels for Credit Scoring Validation Statistics |

BootValidation | Adjusting for Optimism in 'glmnet' Regression using Bootstrapping |

BootWPTOS | Test Stationarity using Bootstrap Wavelet Packet Tests |

boral | Bayesian Ordination and Regression AnaLysis |

Boruta | Wrapper Algorithm for All Relevant Feature Selection |

BosonSampling | Classical Boson Sampling |

BoSSA | A Bunch of Structure and Sequence Analysis |

bossMaps | Convert Binary Species Range Maps into Continuous Surfaces Based on Distance to Range Edge |

boussinesq | Analytic Solutions for (ground-water) Boussinesq Equation |

BoutrosLab.plotting.general | Create Publication-Quality Plots |

boxcoxmix | Box-Cox-Type Transformations for Linear and Logistic Models with Random Effects |

boxoffice | Downloads Box Office Information for Given Dates |

boxplotdbl | Double Box Plot for Two-Axes Correlation |

boxr | Interface for the 'Box.com API' |

bpa | Basic Pattern Analysis |

bpca | Biplot of Multivariate Data Based on Principal Components Analysis |

bpcp | Beta Product Confidence Procedure for Right Censored Data |

bPeaks | bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes |

BPEC | Bayesian Phylogeographic and Ecological Clustering |

bpkde | Back-Projected Kernel Density Estimation |

bpnreg | Bayesian Projected Normal Regression Models for Circular Data |

bpp | Computations Around Bayesian Predictive Power |

bqtl | Bayesian QTL Mapping Toolkit |

BradleyTerry2 | Bradley-Terry Models |

BradleyTerryScalable | Fits the Bradley-Terry Model to Potentially Large and Sparse Networks of Comparison Data |

braidReports | Visualize Combined Action Response Surfaces and Report BRAID Analyses |

braidrm | Fitting Dose Response with the BRAID Combined Action Model |

BrailleR | Improved Access for Blind Users |

brainGraph | Graph Theory Analysis of Brain MRI Data |

brainKCCA | Region-Level Connectivity Network Construction via Kernel Canonical Correlation Analysis |

brainR | Helper Functions to 'misc3d' and 'rgl' Packages for Brain Imaging |

brainwaver | Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory |

Branching | Simulation and Estimation for Branching Processes |

brant | Test for Parallel Regression Assumption |

braQCA | Bootstrapped Robustness Assessment for Qualitative Comparative Analysis |

brazilmaps | Brazilian Maps from Different Geographic Levels |

brea | Bayesian Recurrent Event Analysis |

breakage | SICM pipette tip geometry estimation |

breakaway | Species Richness Estimation and Modeling |

breakDown | Model Agnostic Explainers for Individual Predictions |

breakfast | Multiple Change-Point Detection and Segmentation |

breakpoint | An R Package for Multiple Break-Point Detection via the Cross-Entropy Method |

breathtestcore | Core Functions to Read and Fit 13c Time Series from Breath Tests |

breathteststan | Stan-Based Fit to Gastric Emptying Curves |

BreedingSchemeLanguage | Describe and Simulate Breeding Schemes |

bReeze | Functions for Wind Resource Assessment |

brew | Templating Framework for Report Generation |

brglm | Bias Reduction in Binomial-Response Generalized Linear Models |

brglm2 | Bias Reduction in Generalized Linear Models |

bridgedist | An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003) |

bridger2 | Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data |

bridgesampling | Bridge Sampling for Marginal Likelihoods and Bayes Factors |

briskaR | Biological Risk Assessment |

brlrmr | Bias Reduction with Missing Binary Response |

brm | Binary Regression Model |

brms | Bayesian Regression Models using 'Stan' |

brnn | Bayesian Regularization for Feed-Forward Neural Networks |

Brobdingnag | Very Large Numbers in R |

broman | Karl Broman's R Code |

broom | Convert Statistical Analysis Objects into Tidy Tibbles |

brotli | A Compression Format Optimized for the Web |

BrownDog | Brown Dog R Interface |

Brq | Bayesian Analysis of Quantile Regression Models |

brr | Bayesian Inference on the Ratio of Two Poisson Rates |

brranching | Fetch 'Phylogenies' from Many Sources |

brt | Biological Relevance Testing |

BRugs | Interface to the 'OpenBUGS' MCMC Software |

Brundle | Normalisation Tools for Inter-Condition Variability of ChIP-Seq Data |

bs4Dash | A 'Bootstrap 4' Version of 'shinydashboard' |

BSagri | Safety Assessment in Agricultural Field Trials |

bsam | Bayesian State-Space Models for Animal Movement |

bsamGP | Bayesian Spectral Analysis Models using Gaussian Process Priors |

BSDA | Basic Statistics and Data Analysis |

bsearchtools | Binary Search Tools |

BSGS | Bayesian Sparse Group Selection |

BSGW | Bayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression |

bshazard | Nonparametric Smoothing of the Hazard Function |

BSL | Bayesian Synthetic Likelihood with Graphical Lasso |

BsMD | Bayes Screening and Model Discrimination |

BSPADATA | Bayesian Proposal to Fit Spatial Econometric Models |

bspec | Bayesian Spectral Inference |

bsplinePsd | Bayesian Nonparametric Spectral Density Estimation Using B-Spline Priors |

bsplus | Adds Functionality to the R Markdown + Shiny Bootstrap Framework |

bspmma | bspmma: Bayesian Semiparametric Models for Meta-Analysis |

BSquare | Bayesian Simultaneous Quantile Regression |

BSSasymp | Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates |

bssm | Bayesian Inference of Non-Linear and Non-Gaussian State Space Models |

bssn | Birnbaum-Saunders Model Based on Skew-Normal Distribution |

bst | Gradient Boosting |

bsts | Bayesian Structural Time Series |

btb | Beyond the Border - Kernel Density Estimation for Urban Geography |

BTdecayLasso | Bradley-Terry Model with Exponential Time Decayed Log-Likelihood and Adaptive Lasso |

btergm | Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood |

btf | Estimates Univariate Function via Bayesian Trend Filtering |

BTLLasso | Modelling Heterogeneity in Paired Comparison Data |

BTR | Training and Analysing Asynchronous Boolean Models |

BTSPAS | Bayesian Time-Strat. Population Analysis |

BTYD | Implementing Buy 'Til You Die Models |

BTYDplus | Probabilistic Models for Assessing and Predicting your Customer Base |

bucky | Bucky's Archive for Data Analysis in the Social Sciences |

BUCSS | Bias and Uncertainty Corrected Sample Size |

bujar | Buckley-James Regression for Survival Data with High-Dimensional Covariates |

bulletr | Algorithms for Matching Bullet Lands |

BullsEyeR | Topic Modelling |

bullwhipgame | Bullwhip Effect Demo in Shiny |

bunchr | Analyze Bunching in a Kink or Notch Setting |

bundesligR | All Final Tables of the Bundesliga |

bupaR | Business Process Analysis in R |

burnr | Fire-History Analysis in R |

BurStFin | Burns Statistics Financial |

BurStMisc | Burns Statistics Miscellaneous |

bursts | Markov model for bursty behavior in streams |

BusinessDuration | Calculates Business Duration Between Two Dates |

bustt | Bus and Transit Time Calculations |

BuyseTest | Generalized Pairwise Comparisons |

bvarsv | Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters |

bvenn | A Simple alternative to proportional Venn diagrams |

bvls | The Stark-Parker algorithm for bounded-variable least squares |

bvpSolve | Solvers for Boundary Value Problems of Differential Equations |

BVS | Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies |

BVSNLP | Bayesian Variable Selection in High Dimensional Settings using Nonlocal Priors |

bw | Dynamic Body Weight Models for Children and Adults |

bWGR | Bayesian Whole-Genome Regression |

BWStest | Baumgartner Weiss Schindler Test of Equal Distributions |

bytescircle | Statistics About Bytes Contained in a File as a Circle Plot |

c060 | Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models |

c212 | Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes) |

c2c | Compare Two Classifications or Clustering Solutions of Varying Structure |

c3 | 'C3.js' Chart Library |

c3net | Infering large-scale gene networks with C3NET |

C443 | See a Forest for the Trees |

C50 | C5.0 Decision Trees and Rule-Based Models |

ca | Simple, Multiple and Joint Correspondence Analysis |

cabootcrs | Bootstrap Confidence Regions for Correspondence Analysis |

cacIRT | Classification Accuracy and Consistency under Item Response Theory |

CaDENCE | Conditional Density Estimation Network Construction and Evaluation |

CADFtest | A Package to Perform Covariate Augmented Dickey-Fuller Unit Root Tests |

CADStat | Provides a GUI to Several Statistical Methods |

caesar | Encrypts and Decrypts Strings |

caffsim | Simulation of Plasma Caffeine Concentrations by Using Population Pharmacokinetic Model |

cAIC4 | Conditional Akaike Information Criterion for 'lme4' |

Cairo | R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output |

cairoDevice | Embeddable Cairo Graphics Device Driver |

CAISEr | Comparison of Algorithms with Iterative Sample Size Estimation |

calACS | Calculations for All Common Subsequences |

Calculator.LR.FNs | Calculator for LR Fuzzy Numbers |

CALF | Coarse Approximation Linear Function |

CALIBERrfimpute | Multiple Imputation Using MICE and Random Forest |

calibrar | Automated Parameter Estimation for Complex (Ecological) Models |

calibrate | Calibration of Scatterplot and Biplot Axes |

CalibrateSSB | Weighting and Estimation for Panel Data with Non-Response |

calibrator | Bayesian calibration of complex computer codes |

CaliCo | Code Calibration in a Bayesian Framework |

callr | Call R from R |

calmate | Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation |

CAM | Causal Additive Model (CAM) |

CAMAN | Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN |

camsRad | Client for CAMS Radiation Service |

camtrapR | Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses |

cancensus | Canadian Census Data and Geography from the 'CensusMapper' API |

cancerGI | Analyses of Cancer Gene Interaction |

cancerTiming | Estimation of Temporal Ordering of Cancer Abnormalities |

candisc | Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis |

Canopy | Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing |

canprot | Chemical Composition of Differential Protein Expression |

CANSIM2R | Directly Extracts Complete CANSIM Data Tables |

canvasXpress | Visualization Package for CanvasXpress in R |

cape | Combined Analysis of Pleiotropy and Epistasis |

caper | Comparative Analyses of Phylogenetics and Evolution in R |

capm | Companion Animal Population Management |

capn | Capital Asset Pricing for Nature |

captioner | Numbers Figures and Creates Simple Captions |

captr | Client for the Captricity API |

capushe | CAlibrating Penalities Using Slope HEuristics |

capwire | Estimates population size from non-invasive sampling |

car | Companion to Applied Regression |

caRamel | Automatic Calibration by Evolutionary Multi Objective Algorithm |

CARBayes | Spatial Generalised Linear Mixed Models for Areal Unit Data |

CARBayesdata | Data Used in the Vignettes Accompanying the CARBayes and CARBayesST Packages |

CARBayesST | Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data |

carcass | Estimation of the Number of Fatalities from Carcass Searches |

carData | Companion to Applied Regression Data Sets |

cardidates | Identification of Cardinal Dates in Ecological Time Series |

cardioModel | Cardiovascular Safety Exposure-Response Modeling in Early-Phase Clinical Studies |

care | High-Dimensional Regression and CAR Score Variable Selection |

CARE1 | Statistical package for population size estimation in capture-recapture models |

careless | Procedures for Computing Indices of Careless Responding |

caret | Classification and Regression Training |

caretEnsemble | Ensembles of Caret Models |

carfima | Continuous-Time Fractionally Integrated ARMA Process for Irregularly Spaced Long-Memory Time Series Data |

caribou | Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry |

CarletonStats | Functions for Statistics Classes at Carleton College |

CARLIT | Ecological Quality Ratios Calculation and Plot |

caroline | A Collection of Database, Data Structure, Visualization, and Utility Functions for R |

carpenter | Build Common Tables of Summary Statistics for Reports |

caRpools | CRISPR AnalyzeR for Pooled CRISPR Screens |

CARrampsOcl | Reparameterized and marginalized posterior sampling for conditional autoregressive models, OpenCL implementation |

CARRoT | Predicting Categorical and Continuous Outcomes Using One in Ten Rule |

CARS | Covariate Assisted Ranking and Screening for Large-Scale Two-Sample Inference |

carSurv | Correlation-Adjusted Regression Survival (CARS) Scores |

cartogram | Create Cartograms with R |

cartography | Thematic Cartography |

carx | Censored Autoregressive Model with Exogenous Covariates |

caschrono | SÃ©ries Temporelles Avec R |

casebase | Fitting Flexible Smooth-in-Time Hazards and Risk Functions via Logistic and Multinomial Regression |

CaseBasedReasoning | Case-Based Reasoning |

caseMatch | Identify Similar Cases for Qualitative Case Studies |

CASMAP | Detection of Statistically Significant Combinations of SNPs in Association Mapping |

CAST | 'caret' Applications for Spatial-Temporal Models |

castor | Efficient Phylogenetics on Large Trees |

cat | Analysis of categorical-variable datasets with missing values |

catch | Covariate-Adjusted Tensor Classification in High-Dimensions |

catcont | Test, Identify, Select and Mutate Categorical or Continuous Values |

catdap | Categorical Data Analysis Program Package |

catdata | Categorical Data |

CatDyn | Fishery Stock Assessment by Generalized Depletion Models |

cate | High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation |

catenary | Fits a Catenary to Given Points |

CatEncoders | Encoders for Categorical Variables |

CateSelection | Categorical Variable Selection Methods |

cati | Community Assembly by Traits: Individuals and Beyond |

catIrt | An R Package for Simulating IRT-Based Computerized Adaptive Tests |

CATkit | Chronomics Analysis Toolkit (CAT): Periodicity Analysis |

catlearn | Formal Psychological Models of Categorization and Learning |

catmap | Case-Control and TDT Meta-Analysis Package |

catnet | Categorical Bayesian Network Inference |

caTools | Tools: moving window statistics, GIF, Base64, ROC AUC, etc |

CatPredi | Optimal Categorisation of Continuous Variables in Prediction Models |

catR | Generation of IRT Response Patterns under Computerized Adaptive Testing |

catspec | Special models for categorical variables |

catSurv | Computerized Adaptive Testing for Survey Research |

CATT | The Cochran-Armitage Trend Test |

CATTexact | Computation of the p-Value for the Exact Conditional Cochran-Armitage Trend Test |

cattonum | Encode Categorical Features |

causaldrf | Tools for Estimating Causal Dose Response Functions |

causaleffect | Deriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models |

CausalFX | Methods for Estimating Causal Effects from Observational Data |

CausalGAM | Estimation of Causal Effects with Generalized Additive Models |

CausalImpact | Inferring Causal Effects using Bayesian Structural Time-Series Models |

causalMGM | Causal Learning of Mixed Graphical Models |

causalsens | Selection Bias Approach to Sensitivity Analysis for Causal Effects |

causalweight | Causal Inference Based on Weighting Estimators |

Causata | Analysis utilities for binary classification and Causata users |

CAvariants | Correspondence Analysis Variants |

cba | Clustering for Business Analytics |

cbanalysis | Coffee Break Descriptive Analysis |

cbar | Contextual Bayesian Anomaly Detection in R |

CBCgrps | Compare Baseline Characteristics Between Groups |

CBDA | Compressive Big Data Analytics |

cbinom | Continuous Analog of a Binomial Distribution |

cbird | Clustering of Multivariate Binary Data with Dimension Reduction via L1-Regularized Likelihood Maximization |

CBPS | Covariate Balancing Propensity Score |

cbsodataR | Statistics Netherlands (CBS) Open Data API Client |

CBT | Confidence Bound Target Algorithm |

CCA | Canonical correlation analysis |

ccafs | Client for 'CCAFS' 'GCM' Data |

CCAGFA | Bayesian Canonical Correlation Analysis and Group Factor Analysis |

ccaPP | (Robust) Canonical Correlation Analysis via Projection Pursuit |

cccd | Class Cover Catch Digraphs |

ccChooser | Developing a core collections |

cccp | Cone Constrained Convex Problems |

cccrm | Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures |

ccda | Combined Cluster and Discriminant Analysis |

ccdrAlgorithm | CCDr Algorithm for Learning Sparse Gaussian Bayesian Networks |

ccfa | Continuous Counterfactual Analysis |

ccgarch | Conditional Correlation GARCH models |

cchs | Cox Model for Case-Cohort Data with Stratified Subcohort-Selection |

cclust | Convex Clustering Methods and Clustering Indexes |

CCM | Correlation Classification Method |

ccmm | Compositional Mediation Model |

CCMnet | Simulate Congruence Class Model for Networks |

CCP | Significance Tests for Canonical Correlation Analysis (CCA) |

CCpop | One and two locus GWAS of binary phenotype with case-control-population design |

ccRemover | Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing Data |

cctools | Tools for the Continuous Convolution Trick in Nonparametric Estimation |

CCTpack | Consensus Analysis, Model-Based Clustering, and Cultural Consensus Theory Applications |

cdata | Fluid Data Transformations |

cdb | Reading and Writing Constant DataBases |

cdcfluview | Retrieve 'U.S'. Flu Season Data from the 'CDC' 'FluView' Portal |

cdcsis | Conditional Distance Correlation and Its Related Feature Screening Method |

CDECRetrieve | Retrieve Historical and Near Realtime Data from CDEC |

cdfquantreg | Quantile Regression for Random Variables on the Unit Interval |

CDFt | Statistical downscaling through CDF-transform |

CDLasso | Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression |

cdlTools | Tools to Download and Work with USDA Cropscape Data |

CDM | Cognitive Diagnosis Modeling |

CDNmoney | Components of Canadian Monetary and Credit Aggregates |

cdom | R Functions to Model CDOM Spectra |

cdparcoord | Top Frequency-Based Parallel Coordinates |

CDROM | Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data |

cds | Constrained Dual Scaling for Detecting Response Styles |

CDVine | Statistical Inference of C- And D-Vine Copulas |

CDVineCopulaConditional | Sampling from Conditional C- and D-Vine Copulas |

CEC | Cross-Entropy Clustering |

cec2005benchmark | Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization |

cec2013 | Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013 |

ceg | Chain Event Graph |

CEGO | Combinatorial Efficient Global Optimization |

celestial | Collection of Common Astronomical Conversion Routines and Functions |

cellranger | Translate Spreadsheet Cell Ranges to Rows and Columns |

cellVolumeDist | Functions to fit cell volume distributions and thereby estimate cell growth rates and division times |

cellWise | Analyzing Data with Cellwise Outliers |

cem | Coarsened Exact Matching |

CENFA | Climate and Ecological Niche Factor Analysis |

cenGAM | Censored Regression with Smooth Terms |

censCov | Linear Regression with a Randomly Censored Covariate |

CensMixReg | Censored Linear Mixture Regression Models |

censNID | censored NID samples |

censorcopula | Estimate Parameter of Bivariate Copula |

censReg | Censored Regression (Tobit) Models |

CensRegMod | Fits Normal and Student-t Censored Regression Model |

CensSpatial | Censored Spatial Models |

census | Scrape US Census Data |

Census2016 | Data from the Australian Census 2016 |

censusapi | Retrieve Data from the Census APIs |

censusGeography | Changes United States Census Geographic Code into Name of Location |

censusr | Collect Data from the Census API |

censys | Tools to Query the 'Censys' API |

centiserve | Find Graph Centrality Indices |

centralplot | Show the Strength of Relationships Between Centre and Peripheral Items |

cents | Censored time series |

CEoptim | Cross-Entropy R Package for Optimization |

CePa | Centrality-Based Pathway Enrichment |

CepLDA | Discriminant Analysis of Time Series in the Presence of Within-Group Spectral Variability |

cepp | Context Driven Exploratory Projection Pursuit |

cepR | Busca CEPs Brasileiros |

cepreader | Read 'CEP' and Legacy 'CANOCO' Files |

CerioliOutlierDetection | Outlier Detection Using the Iterated RMCD Method of Cerioli (2010) |

cernn | Covariance Estimation Regularized by Nuclear Norm Penalties |

cetcolor | CET Perceptually Uniform Colour Maps |

ceterisParibus | Ceteris Paribus Plots (What-If Plots) for a Single Observation |

cfa | Configural Frequency Analysis (CFA) |

CFC | Cause-Specific Framework for Competing-Risk Analysis |

CfEstimateQuantiles | Estimate quantiles using any order Cornish-Fisher expansion |

cffdrs | Canadian Forest Fire Danger Rating System |

cfma | Causal Functional Mediation Analysis |

cg | Compare Groups, Analytically and Graphically |

cgam | Constrained Generalized Additive Model |

cgAUC | Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it |

cgdsr | R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS) |

cgh | Microarray CGH analysis using the Smith-Waterman algorithm |

cghRA | Array CGH Data Analysis and Visualization |

cgmanalysis | Clean and Analyze Continuous Glucose Monitor Data |

CGP | Composite Gaussian Process Models |

CGPfunctions | Powell Miscellaneous Functions for Teaching and Learning Statistics |

ChainLadder | Statistical Methods and Models for Claims Reserving in General Insurance |

chandwich | Chandler-Bate Sandwich Loglikelihood Adjustment |

changepoint | Methods for Changepoint Detection |

changepoint.np | Methods for Nonparametric Changepoint Detection |

changepointsHD | Change-Point Estimation for Expensive and High-Dimensional Models |

changepointsVar | Change-Points Detections for Changes in Variance |

ChangepointTesting | Change Point Estimation for Clustered Signals |

ChannelAttribution | Markov Model for the Online Multi-Channel Attribution Problem |

ChannelAttributionApp | Shiny Web Application for the Multichannel Attribution Problem |

Chaos01 | 0-1 Test for Chaos |

ChaosGame | Chaos Game |

CharFun | Numerical Computation Cumulative Distribution Function and Probability Density Function from Characteristic Function |

ChargeTransport | Charge Transfer Rates and Charge Carrier Mobilities |

charlatan | Make Fake Data |

CHCN | Canadian Historical Climate Network |

cheb | Discrete Linear Chebyshev Approximation |

chebpol | Multivariate Interpolation |

checkarg | Check the Basic Validity of a (Function) Argument |

CheckDigit | Calculate and verify check digits |

checkmate | Fast and Versatile Argument Checks |

checkpoint | Install Packages from Snapshots on the Checkpoint Server for Reproducibility |

checkr | Check the Properties of Common R Objects |

cheddar | Analysis and Visualisation of Ecological Communities |

chemCal | Calibration Functions for Analytical Chemistry |

chemmodlab | A Cheminformatics Modeling Laboratory for Fitting and Assessing Machine Learning Models |

chemometrics | Multivariate Statistical Analysis in Chemometrics |

ChemometricsWithR | Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences |

ChemoSpec | Exploratory Chemometrics for Spectroscopy |

cherry | Multiple Testing Methods for Exploratory Research |

CHFF | Closest History Flow Field Forecasting for Bivariate Time Series |

chi | The Chi Distribution |

chi2x3way | Partitioning Chi-Squared and Tau Index for Three-Way Contingency Tables |

childesr | Accessing the 'CHILDES' Database |

childhoodmortality | Calculating Childhood Mortality Rates |

childsds | Data and Methods Around Reference Values in Pediatrics |

chillR | Statistical Methods for Phenology Analysis in Temperate Fruit Trees |

chinese.misc | Miscellaneous Tools for Chinese Text Mining and More |

chipPCR | Toolkit of Helper Functions to Pre-Process Amplification Data |

ChIPtest | Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data |

CHMM | Coupled Hidden Markov Models |

chngpt | Estimation and Hypothesis Testing for Threshold Regression |

CHNOSZ | Thermodynamic Calculations for Geobiochemistry |

ChocoLattes | Processing Data from Lattes CV Files |

choiceDes | Design Functions for Choice Studies |

ChoiceModelR | Choice Modeling in R |

cholera | Amend, Augment and Aid Analysis of John Snow's Cholera Map |

CholWishart | Cholesky Decomposition of the Wishart Distribution |

choplump | Choplump tests |

chopthin | The Chopthin Resampler |

ChoR | Chordalysis R Package |

chords | Estimation in Respondent Driven Samples |

choroplethr | Simplify the Creation of Choropleth Maps in R |

choroplethrAdmin1 | Contains an Administrative-Level-1 Map of the World |

choroplethrMaps | Contains Maps Used by the 'choroplethr' Package |

chorrrds | Music Chords Extraction |

chromer | Interface to Chromosome Counts Database API |

chromoMap | Interactive Visualization and Mapping of Human Chromosomes |

chromoR | Analysis of chromosomal interactions data (correction, segmentation and comparison) |

chron | Chronological Objects which can Handle Dates and Times |

CHsharp | Choi and Hall Style Data Sharpening |

chunked | Chunkwise Text-File Processing for 'dplyr' |

chunkR | Read Tables in Chunks |

CIAAWconsensus | Isotope Ratio Meta-Analysis |

CIEE | Estimating and Testing Direct Effects in Directed Acyclic Graphs using Estimating Equations |

CIFsmry | Weighted summary of cumulative incidence functions |

cifti | Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files |

cin | Causal Inference for Neuroscience |

CINID | Curculionidae INstar IDentification |

CINNA | Deciphering Central Informative Nodes in Network Analysis |

CIplot | Functions to Plot Confidence Interval |

cir | Centered Isotonic Regression and Dose-Response Utilities |

circglmbayes | Bayesian Analysis of a Circular GLM |

circlize | Circular Visualization |

CircMLE | Maximum Likelihood Analysis of Circular Data |

CircNNTSR | Statistical Analysis of Circular Data using Nonnegative Trigonometric Sums (NNTS) Models |

CircOutlier | Detection of Outliers in Circular-Circular Regression |

CircStats | Circular Statistics, from "Topics in Circular Statistics" (2001) |

circular | Circular Statistics |

CircularDDM | Circular Drift-Diffusion Model |

cIRT | Choice Item Response Theory |

CISE | Common and Individual Structure Explained for Multiple Graphs |

cit | Causal Inference Test |

CITAN | CITation ANalysis Toolpack |

citbcmst | CIT Breast Cancer Molecular SubTypes Prediction |

citccmst | CIT Colon Cancer Molecular SubTypes Prediction |

Cite | An RStudio Addin to Insert BibTex Citation in Rmarkdown Documents |

ciTools | Confidence or Prediction Intervals, Quantiles, and Probabilities for Statistical Models |

citr | 'RStudio' Add-in to Insert Markdown Citations |

CityPlot | Visualization of structure and contents of a database |

CityWaterBalance | Track Flows of Water Through an Urban System |

ciuupi | Confidence Intervals Utilizing Uncertain Prior Information |

civis | R Client for the 'Civis data science API' |

CJAMP | Copula-Based Joint Analysis of Multiple Phenotypes |

cjoint | AMCE Estimator for Conjoint Experiments |

ck37r | Chris Kennedy's R Toolkit |

ckanr | Client for the Comprehensive Knowledge Archive Network ('CKAN') 'API' |

Ckmeans.1d.dp | Optimal and Fast Univariate Clustering |

CLA | Critical Line Algorithm in Pure R |

cladoRcpp | C++ implementations of phylogenetic cladogenesis calculations |

clam | Classical Age-Depth Modelling of Cores from Deposits |

clampSeg | Idealisation of Patch Clamp Recordings |

ClamR | Time Series Modeling for Climate Change Proxies |

clarifai | Access to Clarifai API |

class | Functions for Classification |

ClassComparison | Classes and Methods for "Class Comparison" Problems on Microarrays |

ClassDiscovery | Classes and Methods for "Class Discovery" with Microarrays or Proteomics |

classGraph | Construct Graphs of S4 Class Hierarchies |

classifierplots | Generates a Visualization of Classifier Performance as a Grid of Diagnostic Plots |

classifly | Explore classification models in high dimensions |

classiFunc | Classification of Functional Data |

classify | Classification Accuracy and Consistency under IRT models |

classInt | Choose Univariate Class Intervals |

classyfire | Robust multivariate classification using highly optimised SVM ensembles |

cld2 | Google's Compact Language Detector 2 |

cld3 | Google's Compact Language Detector 3 |

CleanBSequences | Clean Biological Sequences |

cleanEHR | The Critical Care Clinical Data Processing Tools |

cleangeo | Cleaning Geometries from Spatial Objects |

cleanNLP | A Tidy Data Model for Natural Language Processing |

cleanr | Helps You to Code Cleaner |

clere | Simultaneous Variables Clustering and Regression |

clespr | Composite Likelihood Estimation for Spatial Data |

clhs | Conditioned Latin Hypercube Sampling |

cli | Helpers for Developing Command Line Interfaces |

ClickClust | Model-Based Clustering of Categorical Sequences |

clickR | Fix Data and Create Report Tables from Different Objects |

clickstream | Analyzes Clickstreams Based on Markov Chains |

clifro | Easily Download and Visualise Climate Data from CliFlo |

clikcorr | Censoring Data and Likelihood-Based Correlation Estimation |

climatol | Climate Tools (Series Homogenization and Derived Products) |

climbeR | Calculate Average Minimal Depth of a Maximal Subtree for 'ranger' Package Forests |

ClimClass | Climate Classification According to Several Indices |

climdex.pcic | PCIC Implementation of Climdex Routines |

ClimDown | Climate Downscaling Library for Daily Climate Model Output |

clime | Constrained L1-minimization for Inverse (covariance) Matrix Estimation |

climextRemes | Tools for Analyzing Climate Extremes |

climwin | Climate Window Analysis |

clinDR | Simulation and Analysis Tools for Clinical Dose Response Modeling |

clinfun | Clinical Trial Design and Data Analysis Functions |

ClinicalTrialSummary | Summary Measures for Clinical Trials with Survival Outcomes |

clinPK | Clinical Pharmacokinetics Toolkit |

clinsig | Clinical Significance Functions |

clinUtiDNA | Clinical Utility of DNA Testing |

clipr | Read and Write from the System Clipboard |

cliqueMS | Annotation of Isotopes, Adducts and Fragmentation Adducts for in-Source LC/MS Metabolomics Data |

clisymbols | Unicode Symbols at the R Prompt |

CLME | Constrained Inference for Linear Mixed Effects Models |

clogitboost | Boosting Conditional Logit Model |

clogitLasso | Sparse Conditional Logistic Regression for Matched Studies |

clordr | Composite Likelihood Inference for Spatial Ordinal Data with Replications |

cloudml | Interface to the Google Cloud Machine Learning Platform |

cloudUtil | Cloud Utilization Plots |

clpAPI | R Interface to C API of COIN-OR Clp |

CLSOCP | A smoothing Newton method SOCP solver |

clttools | Central Limit Theorem Experiments (Theoretical and Simulation) |

clubSandwich | Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections |

clue | Cluster Ensembles |

ClueR | Cluster Evaluation |

clues | Clustering Method Based on Local |

CluMix | Clustering and Visualization of Mixed-Type Data |

clusrank | Wilcoxon Rank Sum Test for Clustered Data |

clust.bin.pair | Statistical Methods for Analyzing Clustered Matched Pair Data |

clustEff | Clusters of Effects Curves in Quantile Regression Models |

cluster | "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al. |

cluster.datasets | Cluster Analysis Data Sets |

Cluster.OBeu | Cluster Analysis 'OpenBudgets' |

ClusterBootstrap | Analyze Clustered Data with Generalized Linear Models using the Cluster Bootstrap |

clusterCrit | Clustering Indices |

clusteredinterference | Causal Effects from Observational Studies with Clustered Interference |

ClusteredMutations | Location and Visualization of Clustered Somatic Mutations |

clusterfly | Explore clustering interactively using R and GGobi |

clusterGeneration | Random Cluster Generation (with Specified Degree of Separation) |

clusterGenomics | Identifying clusters in genomics data by recursive partitioning |

clusterhap | Clustering Genotypes in Haplotypes |

clustering.sc.dp | Optimal Distance-Based Clustering for Multidimensional Data with Sequential Constraint |

clusterlab | Flexible Gaussian Cluster Simulator |

clustermq | Evaluate Function Calls on HPC Schedulers (LSF, SGE, SLURM, PBS/Torque) |

clusternomics | Integrative Clustering for Heterogeneous Biomedical Datasets |

clusterPower | Power Calculations for Cluster-Randomized and Cluster-Randomized Crossover Trials |

ClusterR | Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans and K-Medoids Clustering |

ClusterRankTest | Rank Tests for Clustered Data |

clusterRepro | Reproducibility of gene expression clusters |

clusterSEs | Calculate Cluster-Robust p-Values and Confidence Intervals |

clusterSim | Searching for Optimal Clustering Procedure for a Data Set |

ClusterStability | Assessment of Stability of Individual Objects or Clusters in Partitioning Solutions |

clustertend | Check the Clustering Tendency |

clusteval | Evaluation of Clustering Algorithms |

ClustGeo | Hierarchical Clustering with Spatial Constraints |

clustMD | Model Based Clustering for Mixed Data |

clustMixType | k-Prototypes Clustering for Mixed Variable-Type Data |

ClustMMDD | Variable Selection in Clustering by Mixture Models for Discrete Data |

ClustOfVar | Clustering of Variables |

clustRcompaR | Easy Interface for Clustering a Set of Documents and Exploring Group- Based Patterns |

clustrd | Methods for Joint Dimension Reduction and Clustering |

clustree | Visualise Clusterings at Different Resolutions |

clustsig | Significant Cluster Analysis |

ClustVarLV | Clustering of Variables Around Latent Variables |

clustvarsel | Variable Selection for Gaussian Model-Based Clustering |

ClusVis | Gaussian-Based Visualization of Gaussian and Non-Gaussian Model-Based Clustering |

clv | Cluster Validation Techniques |

clValid | Validation of Clustering Results |

cmaes | Covariance Matrix Adapting Evolutionary Strategy |

cmaesr | Covariance Matrix Adaptation Evolution Strategy |

CMatching | Matching Algorithms for Causal Inference with Clustered Data |

CMC | Cronbach-Mesbah Curve |

cmce | Computer Model Calibration for Deterministic and Stochastic Simulators |

CMF | Collective matrix factorization |

CMLS | Constrained Multivariate Least Squares |

cmm | Categorical Marginal Models |

cmna | Computational Methods for Numerical Analysis |

CMPControl | Control Charts for Conway-Maxwell-Poisson Distribution |

CMplot | Circle Manhattan Plot |

cmpprocess | Flexible Modeling of Count Processes |

cmprsk | Subdistribution Analysis of Competing Risks |

cmprskQR | Analysis of Competing Risks Using Quantile Regressions |

cmrutils | Misc Functions of the Center for the Mathematical Research |

cmsaf | Tools for CM SAF NetCDF Data |

cmvnorm | The Complex Multivariate Gaussian Distribution |

cna | Causal Modeling with Coincidence Analysis |

cnbdistr | Conditional Negative Binomial Distribution |

cncaGUI | Canonical Non-Symmetrical Correspondence Analysis in R |

CNLTreg | Complex-Valued Wavelet Lifting for Signal Denoising |

CNLTtsa | Complex-Valued Wavelet Lifting for Univariate and Bivariate Time Series Analysis |

cnmlcd | Maximum Likelihood Estimation of a Log-Concave Density Function |

CNOGpro | Copy Numbers of Genes in prokaryotes |

CNprep | Pre-process DNA Copy Number (CN) Data for Detection of CN Events |

CNull | Fast Algorithms for Frequency-Preserving Null Models in Ecology |

CNVassocData | Example data sets for association analysis of CNV data |

coala | A Framework for Coalescent Simulation |

coalescentMCMC | MCMC Algorithms for the Coalescent |

coalitions | Coalition Probabilities in Multi-Party Democracies |

coarseDataTools | A Collection of Functions to Help with Analysis of Coarsely Observed Data |

cobalt | Covariate Balance Tables and Plots |

COBRA | Nonlinear Aggregation of Predictors |

cobs | Constrained B-Splines (Sparse Matrix Based) |

cocktailApp | 'shiny' App to Discover Cocktails |

CoClust | Copula Based Cluster Analysis |

COCONUT | COmbat CO-Normalization Using conTrols (COCONUT) |

cocor | Comparing Correlations |

cocoreg | Extract Shared Variation in Collections of Data Sets Using Regression Models |

cocorresp | Co-Correspondence Analysis Methods |

cocron | Statistical Comparisons of Two or more Alpha Coefficients |

coda | Output Analysis and Diagnostics for MCMC |

coda.base | A Basic Set of Functions for Compositional Data Analysis |

codadiags | Markov chain Monte Carlo burn-in based on "bridge" statistics |

cOde | Automated C Code Generation for 'deSolve', 'bvpSolve' and 'Sundials' |

codebook | Automatic Codebooks from Survey Metadata Encoded in Attributes |

CodeDepends | Analysis of R Code for Reproducible Research and Code Comprehension |

codemetar | Generate 'CodeMeta' Metadata for R Packages |

codep | Multiscale Codependence Analysis |

codetools | Code Analysis Tools for R |

CoDiNA | Co-Expression Differential Network Analysis |

codingMatrices | Alternative Factor Coding Matrices for Linear Model Formulae |

codyn | Community Dynamics Metrics |

coefficientalpha | Robust Coefficient Alpha and Omega with Missing and Non-Normal Data |

coefplot | Plots Coefficients from Fitted Models |

coenocliner | Coenocline Simulation |

coenoflex | Gradient-Based Coenospace Vegetation Simulator |

coexist | Species coexistence modeling and analysis |

cofeatureR | Generate Cofeature Matrices |

CoFRA | Complete Functional Regulation Analysis |

coga | Convolution of Gamma Distributions |

CoImp | Copula Based Imputation Method |

coin | Conditional Inference Procedures in a Permutation Test Framework |

coindeskr | Access 'CoinDesk' Bitcoin Price Index API |

coinmarketcapr | Get Cryptocurrencies Market Cap Prices from Coin Market Cap |

CoinMinD | Simultaneous Confidence Interval for Multinomial Proportion |

cointmonitoR | Consistent Monitoring of Stationarity and Cointegrating Relationships |

cointReg | Parameter Estimation and Inference in a Cointegrating Regression |

colf | Constrained Optimization on Linear Function |

CollapsABEL | Generalized CDH (GCDH) Analysis |

CollapseLevels | Collapses Levels, Computes Information Value and WoE |

collapsibleTree | Interactive Collapsible Tree Diagrams using 'D3.js' |

collectArgs | Quickly and Neatly Collect Arguments from One Environment to Pass to Another |

CollessLike | Distribution and Percentile of Sackin, Cophenetic and Colless-Like Balance Indices of Phylogenetic Trees |

CollocInfer | Collocation Inference for Dynamic Systems |

collpcm | Collapsed Latent Position Cluster Model for Social Networks |

collUtils | Auxiliary Package for Package 'CollapsABEL' |

colmozzie | Dengue Cases and Climate Variables in Colombo Sri Lanka |

coloc | Colocalisation Tests of Two Genetic Traits |

colocalization | Normalized Spatial Intensity Correlation |

colordistance | Distance Metrics for Image Color Similarity |

coloredICA | Implementation of Colored Independent Component Analysis and Spatial Colored Independent Component Analysis |

colorednoise | Simulate Temporally Autocorrelated Populations |

colorfulVennPlot | Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data |

colorhcplot | Colorful Hierarchical Clustering Dendrograms |

colormap | Color Palettes using Colormaps Node Module |

ColorPalette | Color Palettes Generator |

colorpatch | Optimized Rendering of Fold Changes and Confidence Values |

colorplaner | A 'ggplot2' Extension to Visualize Two Variables per Color Aesthetic Through Color Space Projections |

colorr | Color Palettes for EPL, MLB, NBA, NHL, and NFL Teams |

colorRamps | Builds color tables |

colorscience | Color Science Methods and Data |

colorspace | Color Space Manipulation |

colorSpec | Color Calculations with Emphasis on Spectral Data |

colortools | Tools for colors in a Hue-Saturation-Value (HSV) color model |

colourlovers | R Client for the COLOURlovers API |

colourpicker | A Colour Picker Tool for Shiny and for Selecting Colours in Plots |

colourvision | Colour Vision Models |

colr | Functions to Select and Rename Data |

colt | Command-Line Color Themes |

comato | Analysis of Concept Maps and Concept Landscapes |

COMBAT | A Combined Association Test for Genes using Summary Statistics |

combinat | combinatorics utilities |

CombinePortfolio | Estimation of Optimal Portfolio Weights by Combining Simple Portfolio Strategies |

CombinePValue | Combine a Vector of Correlated p-values |

CombinS | Construction Methods of some Series of PBIB Designs |

combiter | Combinatorics Iterators |

CombMSC | Combined Model Selection Criteria |

comclim | Community Climate Statistics |

cometExactTest | Exact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm |

comf | Functions for Thermal Comfort Research |

ComICS | Computational Methods for Immune Cell-Type Subsets |

commandr | Command pattern in R |

CommEcol | Community Ecology Analyses |

commentr | Print Nicely Formatted Comments for Use in Script Files |

CommonJavaJars | Useful Libraries for Building a Java Based GUI under R |

commonmark | High Performance CommonMark and Github Markdown Rendering in R |

commonsMath | JAR Files of the Apache Commons Mathematics Library |

CommonTrend | Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics |

CommT | Comparative Phylogeographic Analysis using the Community Tree Framework |

CommunityCorrelogram | Ecological Community Correlogram |

comorbidity | Computing Comorbidity Scores |

Comp2ROC | Compare Two ROC Curves that Intersect |

compactr | Creates empty plots with compact axis notation |

compare | Comparing Objects for Differences |

compareC | Compare Two Correlated C Indices with Right-censored Survival Outcome |

CompareCausalNetworks | Interface to Diverse Estimation Methods of Causal Networks |

compareDF | Do a Git Style Diff of the Rows Between Two Dataframes with Similar Structure |

compareGroups | Descriptive Analysis by Groups |

compareODM | comparison of medical forms in CDISC ODM format |

comparer | Compare Output and Run Time |

CompareTests | Correct for Verification Bias in Diagnostic Accuracy & Agreement |

comparison | Multivariate likelihood ratio calculation and evaluation |

CompDist | Multisection Composite Distributions |

compeir | Event-specific incidence rates for competing risks data |

compendiumdb | Tools for Retrieval and Storage of Functional Genomics Data |

comperank | Ranking Methods for Competition Results |

comperes | Manage Competition Results |

compete | Analyzing Social Hierarchies |

CompGLM | Conway-Maxwell-Poisson GLM and Distribution Functions |

compHclust | Complementary Hierarchical Clustering |

Compind | Composite Indicators Functions |

complexity | Calculate the Proportion of Permutations in Line with an Informative Hypothesis |

complexplus | Functions of Complex or Real Variable |

complmrob | Robust Linear Regression with Compositional Data as Covariates |

CompLognormal | Functions for actuarial scientists |

compoisson | Conway-Maxwell-Poisson Distribution |

COMPoissonReg | Conway-Maxwell Poisson (COM-Poisson) Regression |

Compositional | Compositional Data Analysis |

compositions | Compositional Data Analysis |

compound.Cox | Univariate Feature Selection and Compound Covariate for Predicting Survival |

Compounding | Computing Continuous Distributions |

CompQuadForm | Distribution Function of Quadratic Forms in Normal Variables |

CompR | Paired Comparison Data Analysis |

CompRandFld | Composite-Likelihood Based Analysis of Random Fields |

compute.es | Compute Effect Sizes |

comtradr | Interface with the United Nations Comtrade API |

Conake | Continuous Associated Kernel Estimation |

concatenate | Human-Friendly Text from Unknown Strings |

concaveman | A Very Fast 2D Concave Hull Algorithm |

conclust | Pairwise Constraints Clustering |

ConConPiWiFun | Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions |

concor | Concordance |

concordance | Product Concordance |

concreg | Concordance Regression |

cond | Approximate Conditional Inference for Logistic and Loglinear Models |

condformat | Conditional Formatting in Data Frames |

condGEE | Parameter estimation in conditional GEE for recurrent event gap times |

CondIndTests | Nonlinear Conditional Independence Tests |

condir | Computation of P Values and Bayes Factors for Conditioning Data |

conditions | Standardized Conditions for R |

condmixt | Conditional Density Estimation with Neural Network Conditional Mixtures |

condMVNorm | Conditional Multivariate Normal Distribution |

CONDOP | Condition-Dependent Operon Predictions |

CondReg | Condition Number Regularized Covariance Estimation |

condSURV | Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data |

condusco | Query-Driven Pipeline Execution and Query Templates |

condvis | Conditional Visualization for Statistical Models |

coneproj | Primal or Dual Cone Projections with Routines for Constrained Regression |

conf | Visualization and Analysis of Statistical Measures of Confidence |

conf.design | Construction of factorial designs |

confidence | Confidence Estimation of Environmental State Classifications |

config | Manage Environment Specific Configuration Values |

ConfigParser | Package to Parse an INI File, Including Variable Interpolation |

configr | An Implementation of Parsing and Writing Configuration File (JSON/INI/YAML/TOML) |

confinterpret | Descriptive Interpretations of Confidence Intervals |

conflicted | An Alternative Conflict Resolution Strategy |

conformalClassification | Transductive and Inductive Conformal Predictions for Classification Problems |

ConfoundedMeta | Sensitivity Analyses for Unmeasured Confounding in Meta-Analyses |

confreq | Configural Frequencies Analysis Using Log-Linear Modeling |

confSAM | Estimates and Bounds for the False Discovery Proportion, by Permutation |

congressbr | Downloads, Unpacks and Tidies Legislative Data from the Brazilian Federal Senate and Chamber of Deputies |

conicfit | Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov |

conics | Plot Conics |

Conigrave | Flexible Tools for Multiple Imputation |

conjoint | Conjoint analysis package |

ConjointChecks | A package to check the cancellation axioms of conjoint measurement |

ConnMatTools | Tools for Working with Connectivity Data |

conover.test | Conover-Iman Test of Multiple Comparisons Using Rank Sums |

ConR | Computation of Parameters Used in Preliminary Assessment of Conservation Status |

CONS | Consonance Analysis Module |

ConSpline | Partial Linear Least-Squares Regression using Constrained Splines |

ConsRank | Compute the Median Ranking(s) According to the Kemeny's Axiomatic Approach |

constants | Reference on Constants, Units and Uncertainty |

constellation | Identify Event Sequences Using Time Series Joins |

constrainedKriging | Constrained, Covariance-Matching Constrained and Universal Point or Block Kriging |

container | Deque, Set, and Dict - R6 Based Container Classes with Iterators |

ContaminatedMixt | Model-Based Clustering and Classification with the Multivariate Contaminated Normal Distribution |

contfrac | Continued Fractions |

conting | Bayesian Analysis of Contingency Tables |

contoureR | Contouring of Non-Regular Three-Dimensional Data |

ContourFunctions | Create Contour Plots from Data or a Function |

contrast | A Collection of Contrast Methods |

control | A Control Systems Toolbox |

controlTest | Quantile Comparison for Two-Sample Right-Censored Survival Data |

ConvergenceClubs | Finding Convergence Clubs |

ConvergenceConcepts | Seeing Convergence Concepts in Action |

convertGraph | Convert Graphical Files Format |

convertr | Convert Between Units |

convevol | Analysis of Convergent Evolution |

convexjlr | Disciplined Convex Programming in R using 'Convex.jl' |

convey | Income Concentration Analysis with Complex Survey Samples |

convoSPAT | Convolution-Based Nonstationary Spatial Modeling |

cooccur | Probabilistic Species Co-Occurrence Analysis in R |

cooccurNet | Co-Occurrence Network |

coop | Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations |

coopProductGame | Cooperative Aspects of Linear Production Programming Problems |

cooptrees | Cooperative aspects of optimal trees in weighted graphs |

CoordinateCleaner | Automated Cleaning of Occurrence Records from Biological Collections |

copBasic | General Bivariate Copula Theory and Many Utility Functions |

copCAR | Fitting the copCAR Regression Model for Discrete Areal Data |

cope | Coverage Probability Excursion (CoPE) Sets |

coppeCosenzaR | COPPE-Cosenza Fuzzy Hierarchy Model |

coprimary | Sample Size Calculation for Two Primary Time-to-Event Endpoints in Clinical Trials |

copula | Multivariate Dependence with Copulas |

Copula.Markov | Estimation and Statistical Process Control Under Copula-Based Time Series Models |

copulaData | Data Sets for Copula Modeling |

CopulaDTA | Copula Based Bivariate Beta-Binomial Model for Diagnostic Test Accuracy Studies |

copulaedas | Estimation of Distribution Algorithms Based on Copulas |

CopulaRegression | Bivariate Copula Based Regression Models |

CopulaREMADA | Copula Mixed Effect Models for Multivariate Meta-Analysis of Diagnostic Test Accuracy Studies |

CopyDetect | Computing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests |

coRanking | Co-Ranking Matrix |

Corbi | Collection of Rudimentary Bioinformatics Tools |

corclass | Correlational Class Analysis |

cord | Community Estimation in G-Models via CORD |

cordillera | Calculation of the OPTICS Cordillera |

CORE | Cores of Recurrent Events |

coreCT | Programmatic Analysis of Sediment Cores Using Computed Tomography Imaging |

corehunter | Multi-Purpose Core Subset Selection |

CORElearn | Classification, Regression and Feature Evaluation |

coreNLP | Wrappers Around Stanford CoreNLP Tools |

coreSim | Core Functionality for Simulating Quantities of Interest from Generalised Linear Models |

coreTDT | TDT for compound heterozygous and recessive models |

corHMM | Analysis of Binary Character Evolution |

corkscrew | Preprocessor for Data Modeling |

corlink | Record Linkage, Incorporating Imputation for Missing Agreement Patterns, and Modeling Correlation Patterns Between Fields |

CORM | The Clustering of Regression Models Method |

corpcor | Efficient Estimation of Covariance and (Partial) Correlation |

corpora | Statistics and data sets for corpus frequency data |

CorporaCoCo | Corpora Co-Occurrence Comparison |

corpus | Text Corpus Analysis |

corpustools | Managing, Querying and Analyzing Tokenized Text |

corr2D | Implementation of 2D Correlation Analysis in R |

CorrBin | Nonparametrics with Clustered Binary and Multinomial Data |

corrDNA | Finding Associations in Position-Wise Aligned DNA Sequence Dataset |

correctedAUC | Correcting AUC for Measurement Error |

CorrectedFDR | Correcting False Discovery Rates |

CorrectOverloadedPeaks | Correct Overloaded Peaks from GC-APCI-MS Data |

CorReg | Linear Regression Based on Linear Structure Between Variables |

corregp | Functions and Methods for Correspondence Regression |

correlbinom | Correlated Binomial Probabilities |

Correlplot | A collection of functions for graphing correlation matrices |

corrgram | Plot a Correlogram |

CorrMixed | Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models |

corrplot | Visualization of a Correlation Matrix |

corrr | Correlations in R |

corrsieve | CorrSieve |

CorrToolBox | Modeling Correlational Magnitude Transformations in Discretization Contexts |

corset | Arbitrary Bounding of Series and Time Series Objects |

CorShrink | Adaptive Shrinkage of Correlation and Covariance Matrices |

corTest | Robust Tests for Equal Correlation |

corTools | Tools for processing data after a Genome Wide Association Study |

cosa | Constrained Optimal Sample Allocation |

COSINE | COndition SpecIfic sub-NEtwork |

cosinor | Tools for estimating and predicting the cosinor model |

cosinor2 | Extended Tools for Cosinor Analysis of Rhythms |

cosmoFns | Functions for cosmological distances, times, luminosities, etc |

CosmoPhotoz | Photometric redshift estimation using generalized linear models |

cosso | Fit Regularized Nonparametric Regression Models Using COSSO Penalty |

costat | Time Series Costationarity Determination |

CosW | The CosW Distribution |

cotrend | Consistant Cotrend Rank Selection |

couchDB | Connect to and Work with CouchDB Databases |

COUNT | Functions, Data and Code for Count Data |

Counterfactual | Estimation and Inference Methods for Counterfactual Analysis |

countgmifs | Discrete Response Regression for High-Dimensional Data |

Countr | Flexible Univariate Count Models Based on Renewal Processes |

countrycode | Convert Country Names and Country Codes |

CountsEPPM | Mean and Variance Modeling of Count Data |

countyfloods | Quantify United States County-Level Flood Measurements |

countytimezones | Convert from UTC to Local Time for United States Counties |

countyweather | Compiles Meterological Data for U.S. Counties |

COUSCOus | A Residue-Residue Contact Detecting Method |

covafillr | Local Polynomial Regression of State Dependent Covariates in State-Space Models |

covatest | Tests on Properties of Space-Time Covariance Functions |

covBM | Brownian Motion Processes for 'nlme'-Models |

covequal | Test for Equality of Covariance Matrices |

covfefe | Covfefy Any Word, Sentence or Speech |

covLCA | Latent Class Models with Covariate Effects on Underlying and Measured Variables |

covr | Test Coverage for Packages |

covreg | A simultaneous regression model for the mean and covariance |

covRobust | Robust Covariance Estimation via Nearest Neighbor Cleaning |

CovSel | Model-Free Covariate Selection |

CovSelHigh | Model-Free Covariate Selection in High Dimensions |

covsep | Tests for Determining if the Covariance Structure of 2-Dimensional Data is Separable |

covTest | Computes covariance test for adaptive linear modelling |

covTestR | Covariance Matrix Tests |

CovTools | Statistical Tools for Covariance Analysis |

cowbell | Performs Segmented Linear Regression on Two Independent Variables |

cowplot | Streamlined Plot Theme and Plot Annotations for 'ggplot2' |

cowsay | Messages, Warnings, Strings with Ascii Animals |

CoxBoost | Cox models by likelihood based boosting for a single survival endpoint or competing risks |

coxed | Duration-Based Quantities of Interest for the Cox Proportional Hazards Model |

coxinterval | Cox-Type Models for Interval-Censored Data |

coxme | Mixed Effects Cox Models |

coxphf | Cox Regression with Firth's Penalized Likelihood |

CoxPhLb | Analyzing Right-Censored Length-Biased Data |

coxphMIC | Sparse Estimation of Cox Proportional Hazards Models via Approximated Information Criterion |

coxphSGD | Stochastic Gradient Descent log-Likelihood Estimation in Cox Proportional Hazards Model |

coxphw | Weighted Estimation in Cox Regression |

CoxPlus | Cox Regression (Proportional Hazards Model) with Multiple Causes and Mixed Effects |

CoxRidge | Cox Models with Dynamic Ridge Penalties |

coxrobust | Robust Estimation in Cox Model |

coxsei | Fitting a CoxSEI Model |

CP | Conditional Power Calculations |

cp4p | Calibration Plot for Proteomics |

cpa | Confirmatory Path Analysis through the d-sep tests |

CPBayes | Bayesian Meta Analysis for Studying Cross-Phenotype Genetic Associations |

cpca | Methods to perform Common Principal Component Analysis (CPCA) |

CPE | Concordance Probability Estimates in Survival Analysis |

CpGassoc | Association Between Methylation and a Phenotype of Interest |

cpgen | Parallelized Genomic Prediction and GWAS |

CpGFilter | CpG Filtering Method Based on Intra-Class Correlation Coefficients |

cpk | Clinical Pharmacokinetics |

cplexAPI | R Interface to C API of IBM ILOG CPLEX |

cplm | Compound Poisson Linear Models |

cpm | Sequential and Batch Change Detection Using Parametric and Nonparametric Methods |

CPMCGLM | Correction of the P-Value after Multiple Coding in Generalized Linear Models |

CPP | Composition of Probabilistic Preferences (CPP) |

cpr | Control Polygon Reduction |

Cprob | The Conditional Probability Function of a Competing Event |

cprr | Functions for Working with Danish CPR Numbers |

CPsurv | Nonparametric Change Point Estimation for Survival Data |

cpt | Classification Permutation Test |

cptcity | 'cpt-city' Colour Gradients |

cptec | An Interface to the 'CPTEC/INPE' API |

cqrReg | Quantile, Composite Quantile Regression and Regularized Versions |

cquad | Conditional Maximum Likelihood for Quadratic Exponential Models for Binary Panel Data |

CR | Power Calculation for Weighted Log-Rank Tests in Cure Rate Models |

cr17 | Testing Differences Between Competing Risks Models and Their Visualisations |

CRAC | Cosmology R Analysis Code |

cramer | Multivariate nonparametric Cramer-Test for the two-sample-problem |

crank | Completing Ranks |

cranlike | Tools for 'CRAN'-Like Repositories |

cranlogs | Download Logs from the 'RStudio' 'CRAN' Mirror |

cranly | Package Directives and Collaboration Networks in CRAN |

CRANsearcher | RStudio Addin for Searching Packages in CRAN Database Based on Keywords |

crantastic | Various R tools for http://crantastic.org/ |

crawl | Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data |

crayon | Colored Terminal Output |

crblocks | Categorical Randomized Block Data Analysis |

crch | Censored Regression with Conditional Heteroscedasticity |

CREAM | Clustering of Genomic Regions Analysis Method |

CreditMetrics | Functions for calculating the CreditMetrics risk model |

creditr | Credit Default Swaps in R |

CreditRisk | Evaluation of Credit Risk with Structural and Reduced Form Models |

credsubs | Credible Subsets |

credule | Credit Default Swap Functions |

cRegulome | Obtain and Visualize Regulome-Gene Expression Correlations in Cancer |

CRF | Conditional Random Fields |

cricketr | Analyze Cricketers Based on ESPN Cricinfo Statsguru |

crimCV | Group-Based Modelling of Longitudinal Data |

crimelinkage | Statistical Methods for Crime Series Linkage |

crisp | Fits a Model that Partitions the Covariate Space into Blocks in a Data- Adaptive Way |

CRM | Continual Reassessment Method (CRM) for Phase I Clinical Trials |

crminer | Fetch 'Scholary' Full Text from 'Crossref' |

crmn | CCMN and other noRMalizatioN methods for metabolomics data |

crmPack | Object-Oriented Implementation of CRM Designs |

crn | Downloads and Builds datasets for Climate Reference Network |

crochet | Implementation Helper for [ and [<- Of Custom Matrix-Like Types |

cronR | Schedule R Scripts and Processes with the 'cron' Job Scheduler |

crop | Graphics Cropping Tool |

cropdatape | Open Data of Agricultural Production of Crops of Peru |

CrossClustering | A Partial Clustering Algorithm with Automatic Estimation of the Number of Clusters and Identification of Outliers |

crossdes | Construction of Crossover Designs |

crossmatch | The Cross-match Test |

Crossover | Analysis and Search of Crossover Designs |

crossReg | Confidence intervals for crossover points of two simple regression lines |

CrossScreening | Cross-Screening in Observational Studies that Test Many Hypotheses |

crosstalk | Inter-Widget Interactivity for HTML Widgets |

CrossVA | Verbal Autopsy Data Transform for Use with Various Coding Algorithms |

crossval | Generic Functions for Cross Validation |

CrossValidate | Classes and Methods for Cross Validation of "Class Prediction" Algorithms |

crosswalkr | Rename and Encode Data Frames Using External Crosswalk Files |

crossword.r | Generating Crosswords from Word Lists |

crp.CSFP | CreditRisk+ Portfolio Model |

CRPClustering | Bayesian Nonparametric Chinese Restaurant Process Clustering with Entropy |

crplyr | A 'dplyr' Interface for Crunch |

crqa | Cross-Recurrence Quantification Analysis for Categorical and Continuous Time-Series |

crqanlp | Cross-Recurrence Quantification Analysis for Dynamic Natural Language Processing |

crrp | Penalized Variable Selection in Competing Risks Regression |

crrSC | Competing risks regression for Stratified and Clustered data |

crrstep | Stepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model |

crs | Categorical Regression Splines |

crskdiag | Diagnostics for Fine and Gray Model |

crsnls | Nonlinear Regression Parameters Estimation by 'CRS4HC' and 'CRS4HCe' |

crsra | Tidying and Analyzing 'Coursera' Research Export Data |

crtests | Classification and Regression Tests |

CRTgeeDR | Doubly Robust Inverse Probability Weighted Augmented GEE Estimator |

CRTSize | Sample Size Estimation Functions for Cluster Randomized Trials |

crul | HTTP Client |

crunch | Crunch.io Data Tools |

crunchy | Shiny Apps on Crunch |

cruts | Interface to Climatic Research Unit Time-Series Version 3.21 Data |

CrypticIBDcheck | Identifying Cryptic Relatedness in Genetic Association Studies |

crypto | Cryptocurrency Market Data |

CryptRndTest | Statistical Tests for Cryptographic Randomness |

cryst | Calculate the Relative Crystallinity of Starch by XRD and FTIR |

csabounds | Bounds on Distributional Treatment Effect Parameters |

csampling | Functions for Conditional Simulation in Regression-Scale Models |

CsChange | Testing for Change in C-Statistic |

CSclone | Bayesian Nonparametric Modeling in R |

CSeqpat | Frequent Contiguous Sequential Pattern Mining of Text |

CSESA | CRISPR-Based Salmonella Enterica Serotype Analyzer |

CSFA | Connectivity Scores with Factor Analysis |

cshapes | The CShapes Dataset and Utilities |

csn | Closed Skew-Normal Distribution |

csp | Correlates of State Policy Data Set in R |

csrplus | Methods to Test Hypotheses on the Distribution of Spatial Point Processes |

csSAM | csSAM - cell-specific Significance Analysis of Microarrays |

cssTools | Cognitive Social Structure Tools |

cstab | Selection of Number of Clusters via Normalized Clustering Instability |

cstar | Substantive significance testing for regression estimates and marginal effects |

csv | Read and Write CSV Files with Selected Conventions |

csvread | Fast Specialized CSV File Loader |

csvy | Import and Export CSV Data with a YAML Metadata Header |

cthreshER | Continuous Threshold Expectile Regression |

ctl | Correlated Trait Locus (CTL) Mapping in R |

CTM | A Text Mining Toolkit for Chinese Document |

ctmcd | Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data |

ctmcmove | Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains |

ctmle | Collaborative Targeted Maximum Likelihood Estimation |

ctmm | Continuous-Time Movement Modeling |

ctqr | Censored and Truncated Quantile Regression |

CTRE | Thresholding Bursty Time Series |

cts | Continuous Time Autoregressive Models |

ctsem | Continuous Time Structural Equation Modelling |

CTT | Classical Test Theory Functions |

CTTShiny | Classical Test Theory via Shiny |

ctv | CRAN Task Views |

CUB | A Class of Mixture Models for Ordinal Data |

cubature | Adaptive Multivariate Integration over Hypercubes |

cubfits | Codon Usage Bias Fits |

cubing | Rubik's Cube Solving |

Cubist | Rule- And Instance-Based Regression Modeling |

CuCubes | MultiDimensional Feature Selection (MDFS) |

cudaBayesreg | CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis |

cudaBayesregData | Data sets for the examples used in the package "cudaBayesreg" |

CUFF | Charles's Utility Function using Formula |

cultevo | Tools, Measures and Statistical Tests for Cultural Evolution |

CUMP | Analyze Multivariate Phenotypes by Combining Univariate Results |

cumplyr | Extends ddply to allow calculation of cumulative quantities |

cumSeg | Change point detection in genomic sequences |

cumstats | Cumulative Descriptive Statistics |

curl | A Modern and Flexible Web Client for R |

currentSurvival | Estimation of CCI and CLFS Functions |

curry | Partial Function Application with %<%, %-<%, and %><% |

curstatCI | Confidence Intervals for the Current Status Model |

curvecomp | Multiple Curve Comparisons Using Parametric Bootstrap |

curvHDR | Filtering of Flow Cytometry Samples |

cusp | Cusp-Catastrophe Model Fitting Using Maximum Likelihood |

CustomerScoringMetrics | Evaluation Metrics for Customer Scoring Models Depending on Binary Classifiers |

customizedTraining | Customized Training for Lasso and Elastic-Net Regularized Generalized Linear Models |

CUSUMdesign | Compute Decision Interval and Average Run Length for CUSUM Charts |

cutoffR | CUTOFF: A Spatio-temporal Imputation Method |

cutpointr | Determine and Evaluate Optimal Cutpoints in Binary Classification Tasks |

cuttlefish.model | An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model |

cvar | Compute Expected Shortfall and Value at Risk for Continuous Distributions |

cvAUC | Cross-Validated Area Under the ROC Curve Confidence Intervals |

CVcalibration | Estimation of the Calibration Equation with Error-in Observations |

cvcrand | Efficient Design and Analysis of Cluster Randomized Trials |

CVD | Color Vision Deficiencies |

cvequality | Tests for the Equality of Coefficients of Variation from Multiple Groups |

CVglasso | Lasso Penalized Precision Matrix Estimation |

cvq2 | Calculate the predictive squared correlation coefficient |

CVR | Canonical Variate Regression |

CVST | Fast Cross-Validation via Sequential Testing |

CVThresh | Level-Dependent Cross-Validation Thresholding |

cvTools | Cross-validation tools for regression models |

CVTuningCov | Regularized Estimators of Covariance Matrices with CV Tuning |

cvxbiclustr | Convex Biclustering Algorithm |

cvxclustr | Splitting methods for convex clustering |

CVXR | Disciplined Convex Optimization |

cwhmisc | Miscellaneous Functions for Math, Plotting, Printing, Statistics, Strings, and Tools |

cwm | Cluster Weighted Models by EM algorithm |

cxxfunplus | extend cxxfunction by saving the dynamic shared objects |

cycleRtools | Tools for Cycling Data Analysis |

cyclestreets | Cycle Routing and Data for Cycling Advocacy |

cyclocomp | Cyclomatic Complexity of R Code |

cycloids | cycloids |

Cyclops | Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis |

cymruservices | Query 'Team Cymru' 'IP' Address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware' Hash Data Services |

cyphid | Cycle and Phase Identification for mastication data |

cystiSim | Agent-Based Model for Taenia_solium Transmission and Control |

CytobankAPI | Cytobank API Wrapper for R |

CytobankAPIstats | Computes Signaling and Population Stats for Cytometry Data on Cytobank using 'CytobankAPI' |

CytobankBridgeR | Bridging and Extending the CytobankAPI Package in R to the Cytobank Web Application |

cytoDiv | Cytometric diversity indices |

cytometree | Automated Cytometry Gating and Annotation |

cytominer | Methods for Image-Based Cell Profiling |

D2C | Predicting Causal Direction from Dependency Features |

D3GB | Interactive Genome Browser with R |

d3heatmap | Interactive Heat Maps Using 'htmlwidgets' and 'D3.js' |

d3Network | Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R |

D3partitionR | Interactive Charts of Nested and Hierarchical Data with 'D3.js' |

d3plus | Seamless 'D3Plus' Integration |

d3r | 'd3.js' Utilities for R |

d3Tree | Create Interactive Collapsible Trees with the JavaScript 'D3' Library |

DAAG | Data Analysis and Graphics Data and Functions |

DAAGbio | Data Sets and Functions, for Demonstrations with Expression Arrays and Gene Sequences |

DAAGxtras | Data Sets and Functions, supplementary to DAAG |

DAC | Calculating Data Agreement Criterion Scores to Rank Experts Based on Their Beliefs |

DACF | Data Analysis with Ceiling and/or Floor Data |

dad | Three-Way Data Analysis Through Densities |

dae | Functions Useful in the Design and ANOVA of Experiments |

daewr | Design and Analysis of Experiments with R |

daff | Diff, Patch and Merge for Data.frames |

dafs | Data analysis for forensic scientists |

dagitty | Graphical Analysis of Structural Causal Models |

dagR | R functions for directed acyclic graphs |

Daim | Diagnostic accuracy of classification models |

DAISIE | Dynamical Assembly of Islands by Speciation, Immigration and Extinction |

DAKS | Data Analysis and Knowledge Spaces |

DALEX | Descriptive mAchine Learning EXplanations |

dalmatian | Automating the Fitting of Double Linear Mixed Models in 'JAGS' |

DALY | The DALY Calculator - Graphical User Interface for Probabilistic DALY Calculation in R |

dam | Data Analysis Metabolomics |

DamiaNN | Neural Network Numerai |

DAMisc | Dave Armstrong's Miscellaneous Functions |

DAMOCLES | Dynamic Assembly Model of Colonization, Local Extinction and Speciation |

damr | Interface to Drosophila Activity Monitor System Result Files |

dams | Dams in the United States from the National Inventory of Dams (NID) |

DandEFA | Dandelion Plot for R-Mode Exploratory Factor Analysis |

DAP | Discriminant Analysis via Projections |

Dark | The Analysis of Dark Adaptation Data |

darksky | Tools to Work with the 'Dark Sky' 'API' |

dartR | Importing and Analysing SNP and Silicodart Data Generated by Genome-Wide Restriction Fragment Analysis |

darts | Statistical Tools to Analyze Your Darts Game |

dashboard | Interactive Data Visualization with D3.js |

Dasst | Tools for Reading, Processing and Writing 'DSSAT' Files |

dat | Tools for Data Manipulation |

data.table | Extension of 'data.frame' |

data.tree | General Purpose Hierarchical Data Structure |

data.world | Functions and Add-Ins for Working with 'data.world' Data Sets and Projects |

Data2LD | Functional Data Analysis with Linear Differential Equations |

data360r | Wrapper for TC/Govdata360 API |

DatabaseConnector | Connecting to Various Database Platforms |

DatabaseConnectorJars | JAR Dependencies for the 'DatabaseConnector' Package |

DatabionicSwarm | Swarm Intelligence for Self-Organized Clustering |

datacheck | Tools for Checking Data Consistency |

datacheckr | Data Checking |

DataClean | Data Cleaning |

DataCombine | Tools for Easily Combining and Cleaning Data Sets |

dataCompareR | Compare Two Data Frames and Summarise the Difference |

datadogr | R Client for 'Datadog' API |

datadr | Divide and Recombine for Large, Complex Data |

DataEntry | Make it Easier to Enter Questionnaire Data |

DataExplorer | Data Explorer |

dataframes2xls | Write Data Frames to Xls Files |

datafsm | Estimating Finite State Machine Models from Data |

DataGraph | Export Data from R so DataGraph can Read it |

DataLoader | Import Multiple File Types |

dataMaid | A Suite of Checks for Identification of Potential Errors in a Data Frame as Part of the Data Screening Process |

datamap | A system for mapping foreign objects to R variables and environments |

datamaps | Create Interactive Web Maps with the 'JavaScript Datamaps' Library |

datamart | Unified access to your data sources |

dataMeta | Create and Append a Data Dictionary for an R Dataset |

dataonderivatives | Easily Source Publicly Available Data on Derivatives |

dataone | R Interface to the DataONE REST API |

datapack | A Flexible Container to Transport and Manipulate Data and Associated Resources |

datapasta | R Tools for Data Copy-Pasta |

dataPreparation | Automated Data Preparation |

dataQualityR | Performs variable level data quality checks and generates summary statistics |

dataRetrieval | Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data |

datarobot | 'DataRobot' Predictive Modeling API |

datasauRus | Datasets from the Datasaurus Dozen |

dataseries | Switzerland's Data Series in One Place |

datasets.load | Interface for Loading Datasets |

DatAssim | Data Assimilation |

datastepr | An Implementation of a SAS-Style Data Step |

datastructures | Implementation of Core Data Structures |

datasus | An Interface to DATASUS System |

datautils | Timestamps and Advanced Plotting |

dataverse | Client for Dataverse 4 Repositories |

dataview | Data and Workspace Browser for Terminals |

DataVisualizations | Visualizations of High-Dimensional Data |

date | Functions for Handling Dates |

datetime | Nominal Dates, Times, and Durations |

datetimeutils | Utilities for Dates and Times |

DATforDCEMRI | Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI |

datoramar | Interface to the 'Datorama' API |

datr | 'Dat' Protocol Interface |

dave | Functions for "Data Analysis in Vegetation Ecology" |

Davies | The Davies Quantile Function |

dawai | Discriminant Analysis with Additional Information |

daymetr | Interface to the 'Daymet' Web Services |

dbarts | Discrete Bayesian Additive Regression Trees Sampler |

dbConnect | Provides a graphical user interface to connect with databases that use MySQL |

dbEmpLikeGOF | Goodness-of-fit and two sample comparison tests using sample entropy |

dbEmpLikeNorm | Test for joint assessment of normality |

DBEST | Detecting Breakpoints and Estimating Segments in Trend |

dbfaker | A Tool to Ensure the Validity of Database Writes |

DBGSA | methods of distance-based gene set functional enrichment analysis |

DBHC | Sequence Clustering with Discrete-Output HMMs |

dbhydroR | 'DBHYDRO' Hydrologic and Water Quality Data |

DBI | R Database Interface |

DBItest | Testing 'DBI' Back Ends |

DBKGrad | Discrete Beta Kernel Graduation of Mortality Data |

dblcens | Compute the NPMLE of distribution from doubly censored data |

dblr | Discrete Boosting Logistic Regression |

dbmss | Distance-Based Measures of Spatial Structures |

dbplot | Simplifies Plotting Data Inside Databases |

dbplyr | A 'dplyr' Back End for Databases |

dbscan | Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms |

dbstats | Distance-Based Statistics |

dbx | A Fast, Easy-to-Use Database Interface |

dc3net | Inferring Condition-Specific Networks via Differential Network Inference |

DCA | Dynamic Correlation Analysis for High Dimensional Data |

DCchoice | Analyzing Dichotomous Choice Contingent Valuation Data |

DCD | Differential Community Detection in Paired Biological Networks |

dcemriS4 | A Package for Image Analysis of DCE-MRI (S4 Implementation) |

DCG | Data Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis |

DCGL | Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data |

dcGOR | Analysis of Ontologies and Protein Domain Annotations |

dChipIO | Methods for Reading dChip Files |

DCL | Claims Reserving under the Double Chain Ladder Model |

dclone | Data Cloning and MCMC Tools for Maximum Likelihood Methods |

DCluster | Functions for the Detection of Spatial Clusters of Diseases |

DClusterm | Model-Based Detection of Disease Clusters |

DCM | Data Converter Module |

dcminfo | Information Matrix for Diagnostic Classification Models |

dcmle | Hierarchical Models Made Easy with Data Cloning |

dcmodify | Modify Data Using Externally Defined Modification Rules |

dcmr | Attribute profile estimation using Diagnostic Classification Models and MCMC |

DCODE | List Linear n-Peptide Constraints for Overlapping Protein Regions |

dCovTS | Distance Covariance and Correlation for Time Series Analysis |

dcurver | Utility Functions for Davidian Curves |

dcv | Conventional Cross-validation statistics for climate-growth model |

ddalpha | Depth-Based Classification and Calculation of Data Depth |

DDD | Diversity-Dependent Diversification |

ddeploy | Wrapper for the Duke Deploy REST API |

DDHFm | Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays) |

DDIwR | DDI with R |

DDM | Death Registration Coverage Estimation |

DDoutlier | Distance & Density-Based Outlier Detection |

ddpcr | Analysis and Visualization of Droplet Digital PCR in R and on the Web |

DDPGPSurv | DDP-GP Survival Analysis |

DDRTree | Learning Principal Graphs with DDRTree |

ddst | Data Driven Smooth Tests |

deadband | Statistical Deadband Algorithms Comparison |

deamer | Deconvolution density estimation with adaptive methods for a variable prone to measurement error |

deBInfer | Bayesian Inference for Differential Equations |

debugme | Debug R Packages |

DECIDE | DEComposition of Indirect and Direct Effects |

decido | Bindings for 'Mapbox' Ear Cutting Triangulation Library |

decision | Statistical Decision Analysis |

decisionSupport | Quantitative Support of Decision Making under Uncertainty |

decode | Differential Co-Expression and Differential Expression Analysis |

decoder | Decode Coded Variables to Plain Text and the Other Way Around |

decomposedPSF | Time Series Prediction with PSF and Decomposition Methods (EMD and EEMD) |

decompr | Global-Value-Chain Decomposition |

decon | Deconvolution Estimation in Measurement Error Models |

deconstructSigs | Identifies Signatures Present in a Tumor Sample |

deconvolveR | Empirical Bayes Estimation Strategies |

DecorateR | Fit and Deploy DECORATE Trees |

Deducer | A Data Analysis GUI for R |

DeducerExtras | Additional dialogs and functions for Deducer |

DeducerPlugInExample | Deducer Plug-in Example |

DeducerPlugInScaling | Reliability and factor analysis plugin |

DeducerSpatial | Deducer for spatial data analysis |

DeducerSurvival | Add Survival Dialogue to Deducer |

DeducerText | Deducer GUI for Text Data |

deducorrect | Deductive Correction, Deductive Imputation, and Deterministic Correction |

deductive | Data Correction and Imputation Using Deductive Methods |

deepboost | Deep Boosting Ensemble Modeling |

deeplr | Interface to the 'DeepL' Translation API |

deepnet | deep learning toolkit in R |

DEEPR | Dirichlet-multinomial Evolutionary Event Profile Randomization (DEEPR) test |

default | Change the Default Arguments in R Functions |

define | Create FDA-Style Data and Program Definitions |

deformula | Integration of One-Dimensional Functions with Double Exponential Formulas |

degenes | Detection of differentially expressed genes |

deGradInfer | Parameter Inference for Systems of Differential Equation |

degreenet | Models for Skewed Count Distributions Relevant to Networks |

deisotoper | Detection of Isotope Pattern of a Mass Spectrometric Measurement |

dejaVu | Multiple Imputation for Recurrent Events |

Delaporte | Statistical Functions for the Delaporte Distribution |

DelayedEffect.Design | Sample Size and Power Calculations using the APPLE and SEPPLE Methods |

deldir | Delaunay Triangulation and Dirichlet (Voronoi) Tessellation |

DeLorean | Estimates Pseudotimes for Single Cell Expression Data |

delt | Estimation of Multivariate Densities Using Adaptive Partitions |

Delta | Measure of Agreement Between Two Raters |

deltaPlotR | Identification of Dichotomous Differential Item Functioning (DIF) using Angoff's Delta Plot Method |

deltar | Calculation of Delta R Values |

Demerelate | Functions to Calculate Relatedness on Diploid Genetic Data |

DEMEtics | Evaluating the genetic differentiation between populations based on Gst and D values |

demi | Differential Expression from Multiple Indicators |

deming | Deming, Thiel-Sen and Passing-Bablock Regression |

demogR | Analysis of Age-Structured Demographic Models |

demography | Forecasting Mortality, Fertility, Migration and Population Data |

demoKde | Kernel Density Estimation for Demonstration Purposes |

DEMOVA | DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using Test Set |

dendextend | Extending 'dendrogram' Functionality in R |

dendroextras | Extra Functions to Cut, Label and Colour Dendrogram Clusters |

dendrometeR | Analyzing Dendrometer Data |

DendroSync | A Set of Tools for Calculating Spatial Synchrony Between Tree-Ring Chronologies |

dendroTools | Linear and Nonlinear Methods for Analyzing Dendroclimatological Data |

DendSer | Dendrogram seriation: ordering for visualisation |

dendsort | Modular Leaf Ordering Methods for Dendrogram Nodes |

DengueRT | Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak |

denoiSeq | Differential Expression Analysis Using a Bottom-Up Model |

denoiseR | Regularized Low Rank Matrix Estimation |

denovolyzeR | Statistical Analyses of De Novo Genetic Variants |

denpro | Visualization of Multivariate Functions, Sets, and Data |

denseFLMM | Functional Linear Mixed Models for Densely Sampled Data |

Density.T.HoldOut | Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation |

densityClust | Clustering by Fast Search and Find of Density Peaks |

DensParcorr | Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks |

densratio | Density Ratio Estimation |

denstrip | Density Strips and Other Methods for Compactly Illustrating Distributions |

DEoptim | Global Optimization by Differential Evolution |

DEoptimR | Differential Evolution Optimization in Pure R |

depend.truncation | Statistical Methods for the Analysis of Dependently Truncated Data |

DEploid | Deconvolute Mixed Genomes with Unknown Proportions |

depmix | Dependent Mixture Models |

depmixS4 | Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4 |

depth | Nonparametric Depth Functions for Multivariate Analysis |

depth.plot | Multivariate Analogy of Quantiles |

DepthProc | Statistical Depth Functions for Multivariate Analysis |

depthTools | Depth Tools Package |

dequer | Stacks, Queues, and 'Deques' for R |

Deriv | Symbolic Differentiation |

derivmkts | Functions and R Code to Accompany Derivatives Markets |

DES | Discrete Event Simulation |

desc | Manipulate DESCRIPTION Files |

descomponer | Seasonal Adjustment by Frequency Analysis |

descr | Descriptive Statistics |

DescribeDisplay | An Interface to the DescribeDisplay GGobi Plugin |

describer | Describe Data in R Using Common Descriptive Statistics |

DescriptiveStats.OBeu | Descriptive Statistics 'OpenBudgets.eu' |

descriptr | Generate Descriptive Statistics & Explore Statistical Distributions |

desctable | Produce Descriptive and Comparative Tables Easily |

DescTools | Tools for Descriptive Statistics |

DescToolsAddIns | Some Functions to be Used as Shortcuts in 'RStudio' |

deseasonalize | Optimal deseasonalization for geophysical time series using AR fitting |

designGG | Computational tool for designing genetical genomics experiments |

designGLMM | Finding Optimal Block Designs for a Generalised Linear Mixed Model |

designmatch | Matched Samples that are Balanced and Representative by Design |

desiR | Desirability Functions for Ranking, Selecting, and Integrating Data |

desirability | Function Optimization and Ranking via Desirability Functions |

desire | Desirability functions in R |

DESnowball | Bagging with Distance-based Regression for Differential Gene Expression Analyses |

deSolve | Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE') |

desplot | Plotting Field Plans for Agricultural Experiments |

detect | Analyzing Wildlife Data with Detection Error |

detector | Detect Data Containing Personally Identifiable Information |

detectRUNS | Detect Runs of Homozygosity and Runs of Heterozygosity in Diploid Genomes |

deTestSet | Test Set for Differential Equations |

DetMCD | Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter) |

detpack | Density Estimation and Random Number Generation with Distribution Element Trees |

DetR | Suite of Deterministic and Robust Algorithms for Linear Regression |

detrendeR | Start the detrendeR Graphical User Interface (GUI) |

detrendr | Detrend Images |

DetSel | A computer program to detect markers responding to selection |

detzrcr | Compare Detrital Zircon Suites |

devEMF | EMF Graphics Output Device |

devFunc | Clear and Condense Argument Check for User-Defined Functions |

Devore7 | Data sets from Devore's "Prob and Stat for Eng (7th ed)" |

devRate | Quantify the Relationship Between Development Rate and Temperature in Ectotherms |

devtools | Tools to Make Developing R Packages Easier |

dexter | Data Management and Analysis of Tests |

dextergui | A Graphic User Interface to Dexter |

df2json | Convert a dataframe to JSON |

dfcomb | Phase I/II Adaptive Dose-Finding Design for Combination Studies |

dfCompare | Compare Two Dataframes and Return Adds, Changes, and Deletes |

dfcrm | Dose-finding by the continual reassessment method |

dfexplore | Explore data.frames by plotting NA and classes of each variable |

DFIT | Differential Functioning of Items and Tests |

dfmeta | Meta-Analysis of Phase I Dose-Finding Early Clinical Trials |

dfmta | Phase I/II Adaptive Dose-Finding Design for MTA |

dfoptim | Derivative-Free Optimization |

Dforest | Decision Forest |

dfped | Extrapolation and Bridging of Adult Information in Early Phase Dose-Finding Paediatrics Studies |

dfphase1 | Phase I Control Charts (with Emphasis on Distribution-Free Methods) |

dfpk | Bayesian Dose-Finding Designs using Pharmacokinetics (PK) for Phase I Clinical Trials |

dga | Capture-Recapture Estimation using Bayesian Model Averaging |

dGAselID | Genetic Algorithm with Incomplete Dominance for Feature Selection |

DGCA | Differential Gene Correlation Analysis |

dggridR | Discrete Global Grids |

dglars | Differential Geometric Least Angle Regression |

dglm | Double Generalized Linear Models |

DGM | Dynamic Graphical Models |

dgmb | Simulating Data for PLS Mode B Structural Models |

dgo | Dynamic Estimation of Group-Level Opinion |

dgodata | Data for the 'dgo' Package |

dgof | Discrete Goodness-of-Fit Tests |

DGVM3D | 3D Forest Simulation Visualization Tool |

DHARMa | Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models |

dhga | Differential Hub Gene Analysis |

DHS.rates | Calculate Key DHS Indicators |

dHSIC | Independence Testing via Hilbert Schmidt Independence Criterion |

di | Deficit Index (DI) |

diagis | Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling |

diagmeta | Meta-Analysis of Diagnostic Accuracy Studies with Several Cutpoints |

diagonals | Block Diagonal Extraction or Replacement |

diagram | Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams |

DiagrammeR | Graph/Network Visualization |

DiagrammeRsvg | Export DiagrammeR Graphviz Graphs as SVG |

DiallelAnalysisR | Diallel Analysis with R |

diaplt | Beads Summary Plot of Ranges |

dice | Calculate probabilities of various dice-rolling events |

DiceDesign | Designs of Computer Experiments |

DiceEval | Construction and Evaluation of Metamodels |

DiceKriging | Kriging Methods for Computer Experiments |

DiceOptim | Kriging-Based Optimization for Computer Experiments |

diceR | Diverse Cluster Ensemble in R |

DiceView | Plot Methods for Computer Experiments Design and Surrogate |

dichromat | Color Schemes for Dichromats |

dicionariosIBGE | Dictionaries for reading microdata surveys from IBGE |

did | Treatment Effects with Multiple Periods and Groups |

DidacticBoost | A Simple Implementation and Demonstration of Gradient Boosting |

Diderot | Bibliographic Network Analysis |

didrooRFM | Compute Recency Frequency Monetary Scores for your Customer Data |

dief | Metrics for Continuous Efficiency |

dielectric | Defines some physical constants and dielectric functions commonly used in optics, plasmonics |

diezeit | R Interface to the ZEIT ONLINE Content API |

DIFboost | Detection of Differential Item Functioning (DIF) in Rasch Models by Boosting Techniques |

difconet | Differential Coexpressed Networks |

DiffCorr | Analyzing and Visualizing Differential Correlation Networks in Biological Data |

diffdepprop | Calculates Confidence Intervals for two Dependent Proportions |

diffdf | Dataframe Difference Tool |

diffee | Fast and Scalable Learning of Sparse Changes in High-Dimensional Gaussian Graphical Model Structure |

diffEq | Functions from the book Solving Differential Equations in R |

diffeqr | Solving Differential Equations (ODEs, SDEs, DDEs, DAEs) |

diffeR | Metrics of Difference for Comparing Pairs of Maps |

diffIRT | Diffusion IRT Models for Response and Response Time Data |

diffMeanVar | Detecting Gene Probes with Different Means or Variances Between Two Groups |

diffMeshGP | Multi-Fidelity Computer Experiments Using the Tuo-Wu-Yu Model |

DiffNet | Detection of Statistically Significant Changes in Complex Biological Networks |

diffobj | Diffs for R Objects |

diffpriv | Easy Differential Privacy |

diffr | Display Differences Between Two Files using Codediff Library |

diffractometry | Baseline Identification and Peak Decomposition for x-Ray Diffractograms |

diffrprojects | Projects for Text Version Comparison and Analytics in R |

diffrprojectswidget | Visualization for 'diffrprojects' |

diffusion | Forecast the Diffusion of New Products |

diffusionMap | Diffusion map |

DiffusionRgqd | Inference and Analysis for Generalized Quadratic Diffusions |

DiffusionRimp | Inference and Analysis for Diffusion Processes via Data Imputation and Method of Lines |

DiffusionRjgqd | Inference and Analysis for Jump Generalized Quadratic Diffusions |

diffusr | Network Diffusion Algorithms |

DIFlasso | A Penalty Approach to Differential Item Functioning in Rasch Models |

difNLR | DIF and DDF Detection by Non-Linear Regression Models |

difR | Collection of Methods to Detect Dichotomous Differential Item Functioning (DIF) |

DIFtree | Item Focused Trees for the Identification of Items in Differential Item Functioning |

digest | Create Compact Hash Digests of R Objects |

Digiroo2 | An application programming interface for generating null models of social contacts based on individuals' space use |

digitalPCR | Estimate Copy Number for Digital PCR |

digitize | Use Data from Published Plots in R |

dils | Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links |

DIME | DIME (Differential Identification using Mixture Ensemble) |

dimRed | A Framework for Dimensionality Reduction |

dina | Bayesian Estimation of DINA Model |

dinamic | DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors |

dineq | Decomposition of (Income) Inequality |

DiPhiSeq | Robust Tests for Differential Dispersion and Differential Expression in RNA-Sequencing Data |

diptest | Hartigan's Dip Test Statistic for Unimodality - Corrected |

DIRECT | Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior |

DirectedClustering | Directed Weighted Clustering Coefficient |

DirectEffects | Estimating Controlled Direct Effects for Explaining Causal Findings |

Directional | Directional Statistics |

directlabels | Direct Labels for Multicolor Plots |

directPA | Direction Analysis for Pathways and Kinases |

DirectStandardisation | Adjusted Means and Proportions by Direct Standardisation |

dirichletprocess | Build Dirichlet Process Objects for Bayesian Modelling |

DirichletReg | Dirichlet Regression in R |

dirmcmc | Directional Metropolis Hastings Algorithm |

dirmult | Estimation in Dirichlet-Multinomial distribution |

discgolf | Discourse API Client |

disclap | Discrete Laplace Exponential Family |

disclapmix | Discrete Laplace Mixture Inference using the EM Algorithm |

disco | Discordance and Concordance of Transcriptomic Responses |

discord | Functions for Discordant Kinship Modeling |

discretecdAlgorithm | Coordinate-Descent Algorithm for Learning Sparse Discrete Bayesian Networks |

DiscreteFDR | Multiple Testing Procedures with Adaptation for Discrete Tests |

DiscreteInverseWeibull | Discrete Inverse Weibull Distribution |

DiscreteLaplace | Discrete Laplace Distributions |

discreteMTP | Multiple testing procedures for discrete test statistics |

discreteRV | Create and Manipulate Discrete Random Variables |

DiscreteWeibull | Discrete Weibull Distributions (Type 1 and 3) |

discretization | Data preprocessing, discretization for classification |

discrimARTs | Discrimination of Alternative Reproductive Tactics (ARTs) |

DiscriMiner | Tools of the Trade for Discriminant Analysis |

discSurv | Discrete Time Survival Analysis |

diseasemapping | Modelling Spatial Variation in Disease Risk for Areal Data |

DisHet | Estimate the Gene Expression Levels and Component Proportions of the Normal, Stroma (Immune) and Tumor Components of Bulk Tumor Samples |

DisimForMixed | Calculate Dissimilarity Matrix for Dataset with Mixed Attributes |

DisImpact | Calculates Disproportionate Impact When Binary Success Data are Disaggregated by Subgroups |

diskImageR | A Pipeline to Analyze Resistance and Tolerance from Drug Disk Diffusion Assays |

dismo | Species Distribution Modeling |

disparityfilter | Disparity Filter Algorithm for Weighted Networks |

displayHTS | displayHTS |

dispmod | Modelling Dispersion in GLM |

disposables | Create Disposable R Packages for Testing |

dispRity | Measuring Disparity |

dissever | Spatial Downscaling using the Dissever Algorithm |

dissUtils | Utilities for making pairwise comparisons of multivariate data |

Distance | Distance Sampling Detection Function and Abundance Estimation |

distance.sample.size | Calculates Study Size Required for Distance Sampling |

distances | Tools for Distance Metrics |

DistatisR | DiSTATIS Three Way Metric Multidimensional Scaling |

distcomp | Computations over Distributed Data without Aggregation |

distcrete | Discrete Distribution Approximations |

distdrawr | Download Occurrence Data of Vascular Plants in Germany from the FLORKART Database |

distfree.cr | Distribution-Free Confidence Region |

distillery | Method Functions for Confidence Intervals and to Distill Information from an Object |

distory | Distance Between Phylogenetic Histories |

distr | Object Oriented Implementation of Distributions |

distrDoc | Documentation for 'distr' Family of R Packages |

distrEllipse | S4 Classes for Elliptically Contoured Distributions |

distrEx | Extensions of Package 'distr' |

DISTRIB | Four Essential Functions for Statistical Distributions Analysis: A New Functional Approach |

DistributionUtils | Distribution Utilities |

distrMod | Object Oriented Implementation of Probability Models |

distrom | Distributed Multinomial Regression |

distrr | Estimate and Manage Empirical Distributions |

distrRmetrics | Distribution Classes for Distributions from Rmetrics |

distrSim | Simulation Classes Based on Package 'distr' |

distrTeach | Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School |

distrTEst | Estimation and Testing Classes Based on Package 'distr' |

divagis | Provides tools for quality checks of georeferenced plant species accessions |

diveMove | Dive Analysis and Calibration |

diverse | Diversity Measures for Complex Systems |

diversitree | Comparative 'Phylogenetic' Analyses of Diversification |

diveRsity | A Comprehensive, General Purpose Population Genetics Analysis Package |

DiversityOccupancy | Building Diversity Models from Multiple Species Occupancy Models |

divest | Get Images Out of DICOM Format Quickly |

DivMelt | HRM Diversity Assay Analysis Tool |

divo | Tools for Analysis of Diversity and Similarity in Biological Systems |

dixon | Nearest Neighbour Contingency Table Analysis |

DJL | Distance Measure Based Judgment and Learning |

dkanr | Client for the 'DKAN' API |

dkDNA | Diffusion Kernels on a Set of Genotypes |

dLagM | Time Series Regression Models with Distributed Lag Models |

DLASSO | Implementation of Adaptive or Non-Adaptive Differentiable Lasso and SCAD Penalties in Linear Models |

dlib | Allow Access to the 'Dlib' C++ Library |

dlm | Bayesian and Likelihood Analysis of Dynamic Linear Models |

dlmap | Detection Localization Mapping for QTL |

DLMtool | Data-Limited Methods Toolkit |

dlnm | Distributed Lag Non-Linear Models |

dlookr | Tools for Data Diagnosis, Exploration, Transformation |

dlsem | Distributed-Lag Linear Structural Equation Models |

dlstats | Download Stats of R Packages |

dma | Dynamic Model Averaging |

dml | Distance Metric Learning in R |

dmm | Dyadic Mixed Model for Pedigree Data |

DMMF | Daily Based Morgan-Morgan-Finney (DMMF) Soil Erosion Model |

dMod | Dynamic Modeling and Parameter Estimation in ODE Models |

DMR | Delete or Merge Regressors for linear model selection |

DMRMark | DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data |

DMRnet | Delete or Merge Regressors Algorithms for Linear and Logistic Model Selection and High-Dimensional Data |

dmt | Dependency Modeling Toolkit |

dmutate | Mutate Data Frames with Random Variates |

DMwR | Functions and data for "Data Mining with R" |

DMwR2 | Functions and Data for the Second Edition of "Data Mining with R" |

dna | Differential Network Analysis |

DNAseqtest | Generating and Testing DNA Sequences |

DNAtools | Tools for Analysing Forensic Genetic DNA Data |

DnE | Distribution and Equation |

dnet | Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology |

DNetFinder | Estimating Differential Networks under Semiparametric Gaussian Graphical Models |

dng | Distributions and Gradients |

DNLC | Differential Network Local Consistency Analysis |

DNMF | Discriminant Non-Negative Matrix Factorization |

dnr | Simulate Dynamic Networks using Exponential Random Graph Models (ERGM) Family |

DOBAD | Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains |

dobson | Data from the GLM Book by Dobson and Barnett |

doBy | Groupwise Statistics, LSmeans, Linear Contrasts, Utilities |

docker | Wraps Docker Python SDK |

dockerfiler | Easy Dockerfile Creation from R |

docopt | Command-Line Interface Specification Language |

docopulae | Optimal Designs for Copula Models |

docstring | Provides Docstring Capabilities to R Functions |

documair | Automatic Documentation for R packages |

document | Run 'roxygen2' on (Chunks of) Single Code Files |

docuSignr | Connect to 'DocuSign' API |

docxtools | Tools for R Markdown to Docx Documents |

docxtractr | Extract Data Tables and Comments from Microsoft Word Documents |

Dodge | Acceptance Sampling Ideas Originated by H.F. Dodge |

dodgr | Distances on Directed Graphs |

DODR | Detection of Differential Rhythmicity |

DoE.base | Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages |

DoE.MIParray | Creation of Arrays by Mixed Integer Programming |

DoE.wrapper | Wrapper Package for Design of Experiments Functionality |

DoEstRare | Rare Variant Association Test Based on Position Density Estimation |

doex | One-Way Heteroscedastic ANOVA Tests |

doFuture | A Universal Foreach Parallel Adaptor using the Future API of the 'future' Package |

doMC | Foreach Parallel Adaptor for 'parallel' |

Dominance | A Package to Calculate and Visualize Dominance Hierarchies |

domino | R Console Bindings for the 'Domino Command-Line Client' |

doMPI | Foreach Parallel Adaptor for the Rmpi Package |

doParallel | Foreach Parallel Adaptor for the 'parallel' Package |

doRedis | Foreach parallel adapter for the rredis package |

doRNG | Generic Reproducible Parallel Backend for 'foreach' Loops |

DoseFinding | Planning and Analyzing Dose Finding Experiments |

doSNOW | Foreach Parallel Adaptor for the 'snow' Package |

dosresmeta | Multivariate Dose-Response Meta-Analysis |

dostats | Compute Statistics Helper Functions |

DOT | Render and Export DOT Graphs in R |

DoTC | Distribution of Typicality Coefficients |

dotCall64 | Enhanced Foreign Function Interface Supporting Long Vectors |

dotenv | Load Environment Variables from '.env' |

dotwhisker | Dot-and-Whisker Plots of Regression Results |

doubcens | Survivor Function Estimation for Doubly Interval-Censored Failure Time Data |

DoubleCone | Test Against Parametric Regression Function |

DoubleExpSeq | Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter |

DOvalidation | Kernel Hazard Estimation with Best One-Sided and Double One-Sided Cross-Validation |

Dowd | Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk |

downloader | Download Files over HTTP and HTTPS |

downscale | Downscaling Species Occupancy |

downsize | A Tool to Downsize Large Workflows for Testing |

dpa | Dynamic Path Approach |

dparser | Port of 'Dparser' Package |

DPBBM | Dirichlet Process Beta-Binomial Mixture |

dpcR | Digital PCR Analysis |

dpglasso | Primal Graphical Lasso |

Dpit | Distribution Pitting |

dplR | Dendrochronology Program Library in R |

dplRCon | Concordance for Dendroclimatology |

dplyr | A Grammar of Data Manipulation |

dplyr.teradata | A 'Teradata' Backend for 'dplyr' |

dplyrAssist | RStudio Addin for Teaching and Learning Data Manipulation Using 'dplyr' |

dpmixsim | Dirichlet Process Mixture Model Simulation for Clustering and Image Segmentation |

dpmr | Data Package Manager for R |

DPP | Inference of Parameters of Normal Distributions from a Mixture of Normals |

DPpackage | Bayesian Nonparametric Modeling in R |

dprint | Print Tabular Data to Graphics Device |

DPtree | Dirichlet-Based Polya Tree |

DPWeibull | Dirichlet Process Weibull Mixture Model for Survival Data |

dqrng | Fast Pseudo Random Number Generators |

dr | Methods for Dimension Reduction for Regression |

dr4pl | Dose Response Data Analysis using the 4 Parameter Logistic (4pl) Model |

dragonking | Statistical Tools to Identify Dragon Kings |

dragulaR | Drag and Drop Elements in 'Shiny' using 'Dragula Javascript Library' |

drake | A Pipeline Toolkit for Reproducible Computation at Scale |

drat | 'Drat' R Archive Template |

drawExpression | Visualising R syntax through graphics |

DRaWR | Discriminative Random Walk with Restart |

DrBats | Data Representation: Bayesian Approach That's Sparse |

drc | Analysis of Dose-Response Curves |

DREGAR | Regularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR) |

drfit | Dose-Response Data Evaluation |

drgee | Doubly Robust Generalized Estimating Equations |

driftR | Drift Correcting Water Quality Data |

DrillR | R Driver for Apache Drill |

DrImpute | Imputing Dropout Events in Single-Cell RNA-Sequencing Data |

DrInsight | Drug Repurposing: Integration and Systematic Investigation of Genomic High Throughput Data |

DRIP | Discontinuous Regression and Image Processing |

drLumi | Multiplex Immunoassays Data Analysis |

drmdel | Dual Empirical Likelihood Inference under Density Ratio Models in the Presence of Multiple Samples |

dropR | Analyze Drop Out of an Experiment or Survey |

droptest | Simulates LOX Drop Testing |

DRR | Dimensionality Reduction via Regression |

drsmooth | Dose-Response Modeling with Smoothing Splines |

drtmle | Doubly-Robust Nonparametric Estimation and Inference |

DrugClust | Implementation of a Machine Learning Framework for Predicting Drugs Side Effects |

drugCombo | Drug Interaction Modeling Based on Loewe Additivity Following Harbron's Approach |

ds | Descriptive Statistics |

DSAIDE | Dynamical Systems Approach to Infectious Disease Epidemiology |

dsample | Discretization-Based Direct Random Sample Generation |

DSBayes | Bayesian subgroup analysis in clinical trials |

dse | Dynamic Systems Estimation (Time Series Package) |

DSL | Distributed Storage and List |

dslabs | Data Science Labs |

dslice | Dynamic Slicing |

dsm | Density Surface Modelling of Distance Sampling Data |

dsmodels | A Language to Facilitate Simulation and Visualization of Two-Dimensional Dynamical Systems |

DSpat | Spatial Modelling for Distance Sampling Data |

dsrTest | Tests and Confidence Intervals on Directly Standardized Rates for Several Methods |

DSsim | Distance Sampling Simulations |

dst | Using Dempster-Shafer Theory |

DstarM | Analyze Two Choice Reaction Time Data with the D*M Method |

DStree | Recursive Partitioning for Discrete-Time Survival Trees |

dSVA | Direct Surrogate Variable Analysis |

DSviaDRM | Exploring Disease Similarity in Terms of Dysfunctional Regulatory Mechanisms |

DT | A Wrapper of the JavaScript Library 'DataTables' |

dtables | Simplifying Descriptive Frequencies and Statistics |

dtangle | Cell Type Deconvolution from Gene Expressions |

DTComPair | Comparison of Binary Diagnostic Tests in a Paired Study Design |

DtD | Distance to Default |

DTDA | Doubly truncated data analysis |

DTDA.ni | Doubly Truncated Data Analysis, Non Iterative |

dti | Analysis of Diffusion Weighted Imaging (DWI) Data |

DTK | Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes |

DTMCPack | Suite of functions related to discrete-time discrete-state Markov Chains |

dtp | Dynamic Panel Threshold Model |

dtplyr | Data Table Back-End for 'dplyr' |

DTR | Estimation and Comparison of Dynamic Treatment Regimes |

dtree | Decision Trees |

DTRlearn | Learning Algorithms for Dynamic Treatment Regimes |

DTRreg | DTR Estimation and Inference via G-Estimation, Dynamic WOLS, and Q-Learning |

dtt | Discrete Trigonometric Transforms |

dtw | Dynamic Time Warping Algorithms |

DTWBI | Imputation of Time Series Based on Dynamic Time Warping |

dtwclust | Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance |

dtwSat | Time-Weighted Dynamic Time Warping for Satellite Image Time Series Analysis |

DTWUMI | Imputation of Multivariate Time Series Based on Dynamic Time Warping |

dub | Unpacking Assignment for Lists via Pattern Matching |

duckduckr | Simple Client for the DuckDuckGo Instant Answer API |

dummies | Create dummy/indicator variables flexibly and efficiently |

dummy | Automatic Creation of Dummies with Support for Predictive Modeling |

dunn.test | Dunn's Test of Multiple Comparisons Using Rank Sums |

DunnettTests | Software implementation of step-down and step-up Dunnett test procedures |

dupiR | Bayesian inference from count data using discrete uniform priors |

DVHmetrics | Analyze Dose-Volume Histograms and Check Constraints |

dvmisc | Faster Computation of Common Statistics and Miscellaneous Functions |

dwapi | A Client for 'data.world' REST API |

DWDLargeR | Fast Algorithms for Large Scale Generalized Distance Weighted Discrimination |

DWLasso | Degree Weighted Lasso |

DWreg | Parametric Regression for Discrete Response |

dyads | Dyadic Network Analysis |

dygraphs | Interface to 'Dygraphs' Interactive Time Series Charting Library |

Dykstra | Quadratic Programming using Cyclic Projections |

DYM | Did You Mean? |

dyn | Time Series Regression |

dynamac | Dynamic Simulation and Testing for Single-Equation ARDL Models |

DynamicDistribution | Dynamically visualized probability distributions and their moments |

DynamicGP | Local Gaussian Process Model for Large-Scale Dynamic Computer Experiments |

dynamicGraph | dynamicGraph |

dynamichazard | Dynamic Hazard Models using State Space Models |

dynamicTreeCut | Methods for Detection of Clusters in Hierarchical Clustering Dendrograms |

dynamo | Fit a Stochastic Dynamical Array Model to Array Data |

dynatopmodel | Implementation of the Dynamic TOPMODEL Hydrological Model |

dynaTree | Dynamic Trees for Learning and Design |

dynBiplotGUI | Full Interactive GUI for Dynamic Biplot in R |

DynClust | Denoising and clustering for dynamical image sequence (2D or 3D)+T |

dyncomp | Complexity of Short and Coarse-Grained Time Series |

dynCorr | Dynamic Correlation Package |

dynetNLAResistance | Resisting Neighbor Label Attack in a Dynamic Network |

dynfrail | Fitting Dynamic Frailty Models with the EM Algorithm |

dynia | Fit Dynamic Intervention Model |

dynlm | Dynamic Linear Regression |

DynNom | Dynamic Nomograms for Linear, Generalized Linear and Proportional Hazard Models |

dynOmics | Fast Fourier Transform to Identify Associations Between Time Course Omics Data |

dynpanel | Dynamic Panel Data Models |

dynpred | Companion Package to "Dynamic Prediction in Clinical Survival Analysis" |

dynprog | Dynamic Programming Domain-Specific Language |

dynr | Dynamic Modeling in R |

dynRB | Dynamic Range Boxes |

dynsbm | Dynamic Stochastic Block Models |

dynsim | Dynamic Simulations of Autoregressive Relationships |

dynsurv | Dynamic Models for Survival Data |

DynTxRegime | Methods for Estimating Optimal Dynamic Treatment Regimes |

dynutils | Common Functions for the Dynverse Packages |

DySeq | Functions for Dyadic Sequence Analyses |

DZEXPM | Estimation and Prediction of Skewed Spatial Processes |

e1071 | Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien |

eaf | Plots of the Empirical Attainment Function |

Eagle | Multiple Locus Association Mapping on a Genome-Wide Scale |

EAinference | Estimator Augmentation and Simulation-Based Inference |

eAnalytics | Dynamic Web-Based Analytics for the Energy Industry |

earlyR | Estimation of Transmissibility in the Early Stages of a Disease Outbreak |

earlywarnings | Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries |

earth | Multivariate Adaptive Regression Splines |

earthtones | Derive a Color Palette from a Particular Location on Earth |

EasyABC | Efficient Approximate Bayesian Computation Sampling Schemes |

easyAHP | Analytic Hierarchy Process (AHP) |

easyanova | Analysis of Variance and Other Important Complementary Analyses |

easyCODA | Compositional Data Analysis in Practice |

easycsv | Load Multiple 'csv' and 'txt' Tables |

easyDes | An Easy Way to Descriptive Analysis |

easyformatr | Tools for Building R Formats |

EasyHTMLReport | EasyHTMLReport |

EasyMARK | Utility functions for working with mark-recapture data |

EasyMx | Easy Model-Builder Functions for 'OpenMx' |

easyNCDF | Tools to Easily Read/Write NetCDF Files into/from Multidimensional R Arrays |

easynls | Easy Nonlinear Model |

easypackages | Easy Loading and Installing of Packages |

easypower | Sample Size Estimation for Experimental Designs |

easyPubMed | Search and Retrieve Scientific Publication Records from PubMed |

easyreg | Easy Regression |

easySdcTable | Easy Interface to the Statistical Disclosure Control Package 'sdcTable' |

easySVG | An Easy SVG Basic Elements Generator |

easyVerification | Ensemble Forecast Verification for Large Data Sets |

eba | Elimination-by-Aspects Models |

ebal | Entropy reweighting to create balanced samples |

EBASS | Sample Size Calculation Method for Cost-Effectiveness Studies Based on Expected Value of Perfect Information |

EbayesThresh | Empirical Bayes Thresholding and Related Methods |

ebdbNet | Empirical Bayes Estimation of Dynamic Bayesian Networks |

EBEN | Empirical Bayesian Elastic Net |

ebGenotyping | Genotyping and SNP Detection using Next Generation Sequencing Data |

EBglmnet | Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models |

ebimetagenomics | EBI Metagenomics Portal |

EBMAforecast | Ensemble BMA Forecasting |

ebmc | Ensemble-Based Methods for Class Imbalance Problem |

EBrank | Empirical Bayes Ranking |

ebSNP | Genotyping and SNP calling using single-sample next generation sequencing data |

ecb | Programmatic Access to the European Central Bank's Statistical Data Warehouse (SDW) |

ECctmc | Simulation from Endpoint-Conditioned Continuous Time Markov Chains |

ecd | Elliptic Lambda Distribution and Option Pricing Model |

Ecdat | Data Sets for Econometrics |

ecdfHT | Empirical CDF for Heavy Tailed Data |

ecespa | Functions for Spatial Point Pattern Analysis |

ECFsup | Equal Covariance Functions Testing by L2-Norm and Sup-Norm |

Ecfun | Functions for Ecdat |

ECharts2Shiny | Embedding Interactive Charts Generated with ECharts Library into Shiny Applications |

eChem | Simulations for Electrochemistry Experiments |

echo.find | Finding Rhythms Using Extended Circadian Harmonic Oscillators (ECHO) |

echogram | Echogram Visualisation and Analysis |

echor | Access EPA 'ECHO' Data |

ecipex | Efficient calculation of fine structure isotope patterns via Fourier transforms of simplex-based elemental models |

eclust | Environment Based Clustering for Interpretable Predictive Models in High Dimensional Data |

ecm | Build Error Correction Models |

eco | Ecological Inference in 2x2 Tables |

ecodist | Dissimilarity-Based Functions for Ecological Analysis |

ecoengine | Programmatic Interface to the Web Service Methods Provided by UC Berkeley's Natural History Data |

EcoGenetics | Management and Exploratory Analysis of Spatial Data in Landscape Genetics |

Ecohydmod | Ecohydrological Modelling |

EcoHydRology | A community modeling foundation for Eco-Hydrology |

EcoIndR | Ecological Indicators |

ECoL | Complexity Measures for Classification Problems |

ecolMod | "A practical guide to ecological modelling - using R as a simulation platform" |

ecolottery | Coalescent-Based Simulation of Ecological Communities |

EconDemand | General Analysis of Various Economics Demand Systems |

econet | Estimation of Parameter-Dependent Network Centrality Measures |

EcoNetGen | Simulate and Sample from Ecological Interaction Networks |

econullnetr | Null Model Analysis for Ecological Networks |

ecoreg | Ecological Regression using Aggregate and Individual Data |

ecoseries | An R Interface to Brazilian Central Bank and Sidra APIs and the IPEA Data |

ecosim | Toolbox for Aquatic Ecosystem Modeling |

EcoSimR | Null Model Analysis for Ecological Data |

ECOSolveR | Embedded Conic Solver in R |

ecospace | Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks |

ecospat | Spatial Ecology Miscellaneous Methods |

ecotox | Analysis of Ecotoxicology |

ecotoxicology | Methods for Ecotoxicology |

EcoTroph | EcoTroph R package |

ecoval | Procedures for Ecological Assessment of Surface Waters |

EcoVirtual | Simulation of Ecological Models |

ecp | Non-Parametric Multiple Change-Point Analysis of Multivariate Data |

ecr | Evolutionary Computation in R |

EDA | Energy Decomposition Analysis |

eda4treeR | Experimental Design and Analysis for Tree Improvement |

edarf | Exploratory Data Analysis using Random Forests |

edcc | Economic Design of Control Charts |

edci | Edge Detection and Clustering in Images |

edeaR | Exploratory and Descriptive Event-Based Data Analysis |

edeR | Email Data Extraction Using R |

edesign | Maximum Entropy Sampling |

edf | Read Data from European Data Format (EDF and EDF+) Files |

EDFIR | Estimating Discrimination Factors |

edfReader | Reading EDF(+) and BDF(+) Files |

edfun | Creating Empirical Distribution Functions |

edgar | Platform for EDGAR Filing Management |

edgarWebR | SEC Filings Access |

edgebundleR | Circle Plot with Bundled Edges |

edgeCorr | Spatial Edge Correction |

edgeRun | More Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data |

EDISON | Network Reconstruction and Changepoint Detection |

editData | 'RStudio' Addin for Editing a 'data.frame' |

editrules | Parsing, Applying, and Manipulating Data Cleaning Rules |

eDMA | Dynamic Model Averaging with Grid Search |

EDMeasure | Energy-Based Dependence Measures |

edpclient | Empirical Data Platform Client |

EDR | Estimation of the Effective Dimension Reduction ('EDR') Space |

edrGraphicalTools | Provides Tools for Dimension Reduction Methods |

edstan | Stan Models for Item Response Theory |

EdSurvey | Analysis of NCES Education Survey and Assessment Data |

educineq | Compute and Decompose Inequality in Education |

eechidna | Exploring Election and Census Highly Informative Data Nationally for Australia |

eefAnalytics | Analysing Education Trials |

eegkit | Toolkit for Electroencephalography Data |

eegkitdata | Data for package eegkit |

eel | Extended Empirical Likelihood |

EEM | Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data |

eemR | Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data |

eeptools | Convenience Functions for Education Data |

eesim | Simulate and Evaluate Time Series for Environmental Epidemiology |

EFAutilities | Utility Functions for Exploratory Factor Analysis |

EFDR | Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images |

effectFusion | Bayesian Effect Fusion for Categorical Predictors |

EffectLiteR | Average and Conditional Effects |

effectR | Predicts Oomycete Effectors |

effects | Effect Displays for Linear, Generalized Linear, and Other Models |

effectsizescr | Indices for Single-Case Research |

EffectsRelBaseline | Test changes of a grouped response relative to baseline |

EffectStars | Visualization of Categorical Response Models |

EffectStars2 | Effect Stars |

EffectTreat | Prediction of Therapeutic Success |

EfficientMaxEigenpair | Efficient Initials for Computing the Maximal Eigenpair |

efflog | The Causal Effects for a Causal Loglinear Model |

effsize | Efficient Effect Size Computation |

efreadr | Read European Eddy Fluxes CSV Files |

EFS | Tool for Ensemble Feature Selection |

efts | High-Level Functions to Read and Write Ensemble Forecast Time Series in netCDF |

ega | Error Grid Analysis |

egcm | Engle-Granger Cointegration Models |

egg | Extensions for 'ggplot2': Custom Geom, Plot Alignment, Symmetrised Scale, and Fixed Panel Size |

eggCounts | Hierarchical Modelling of Faecal Egg Counts |

egonet | Tool for ego-centric measures in Social Network Analysis |

egor | Import and Analyse Ego-Centered Network Data |

egoTERGM | Estimation of Ego-Temporal Exponential Random Graph Models via Expectation Maximization (EM) |

EGRET | Exploration and Graphics for RivEr Trends (EGRET) |

EGRETci | Exploration and Graphics for RivEr Trends (EGRET) Confidence Intervals |

eha | Event History Analysis |

eHOF | Extended HOF (Huisman-Olff-Fresco) Models |

EHR | Electronic Health Record (EHR) Data Processing and Analysis Tool |

ei | Ecological Inference |

EIAdata | R Wrapper for the Energy Information Administration (EIA) API |

eiCompare | Compares EI, Goodman, RxC Estimates |

eigeninv | Generates (dense) matrices that have a given set of eigenvalues |

eigenmodel | Semiparametric Factor and Regression Models for Symmetric Relational Data |

eigenprcomp | Computes confidence intervals for principal components |

EILA | Efficient Inference of Local Ancestry |

eiPack | eiPack: Ecological Inference and Higher-Dimension Data Management |

eive | An Algorithm for Reducing Errors-in-Variable Bias in Simple Linear Regression |

eiwild | Ecological Inference with individual and aggregate data |

eixport | Export Emissions to Atmospheric Models |

EKMCMC | MCMC Procedures for Estimating Enzyme Kinetics Constants |

EL | Two-sample Empirical Likelihood |

EL2Surv | Empirical Likelihood (EL) for Comparing Two Survival Functions |

elasso | Enhanced Least Absolute Shrinkage and Selection Operator Regression Model |

ElastH | Replicar metodologia de SPE/MF para calculo de elasticidade de receita |

elastic | General Purpose Interface to 'Elasticsearch' |

elasticIsing | Ising Network Estimation using Elastic Net and k-Fold Cross-Validation |

elasticnet | Elastic-Net for Sparse Estimation and Sparse PCA |

elasticsearchr | A Lightweight Interface for Interacting with Elasticsearch from R |

elec | Collection of functions for statistical election audits |

elec.strat | Functions for election audits using stratified random samples |

elect | Estimation of Life Expectancies Using Multi-State Models |

elections | USA Presidential Elections Data |

electionsBR | R Functions to Download and Clean Brazilian Electoral Data |

electoral | Allocating Seats Methods and Party System Scores |

elementR | An Framework for Reducing Elemental LAICPMS Data from Solid Structures |

ElemStatLearn | Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman |

elevatr | Access Elevation Data from Various APIs |

elexr | Load Associated Press Election Results with Elex |

elhmc | Sampling from a Empirical Likelihood Bayesian Posterior of Parameters Using Hamiltonian Monte Carlo |

elliplot | Ellipse Summary Plot of Quantiles |

ellipse | Functions for Drawing Ellipses and Ellipse-Like Confidence Regions |

elliptic | Elliptic Functions |

elmNNRcpp | The Extreme Learning Machine Algorithm |

ELMR | Extreme Machine Learning (ELM) |

eLNNpaired | Model-Based Gene Clustering for Genomics Data from Paired/Matched Designs |

elo | Elo Ratings |

EloChoice | Preference Rating for Visual Stimuli Based on Elo Ratings |

EloRating | Animal Dominance Hierarchies by Elo Rating |

ElstonStewart | Elston-Stewart Algorithm |

ELT | Experience Life Tables |

ELYP | Empirical Likelihood Analysis for the Cox Model and Yang-Prentice (2005) Model |

EMA | Easy Microarray Data Analysis |

EMAtools | Data Management Tools for Real-Time Monitoring/Ecological Momentary Assessment Data |

EMbC | Expectation-Maximization Binary Clustering |

embryogrowth | Tools to Analyze the Thermal Reaction Norm of Embryo Growth |

EMC | Evolutionary Monte Carlo (EMC) algorithm |

Emcdf | Computation and Visualization of Empirical Joint Distribution (Empirical Joint CDF) |

EMCluster | EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution |

EMD | Empirical Mode Decomposition and Hilbert Spectral Analysis |

emdbook | Support Functions and Data for "Ecological Models and Data" |

emdi | Estimating and Mapping Disaggregated Indicators |

emdist | Earth Mover's Distance |

emg | Exponentially Modified Gaussian (EMG) Distribution |

emil | Evaluation of Modeling without Information Leakage |

emIRT | EM Algorithms for Estimating Item Response Theory Models |

EmissV | Vehicular Emissions by Top-Down Methods |

EmiStatR | Emissions and Statistics in R for Wastewater and Pollutants in Combined Sewer Systems |

EML | Read and Write Ecological Metadata Language Files |

eMLEloglin | Fitting log-Linear Models in Sparse Contingency Tables |

emma | Evolutionary model-based multiresponse approach |

EMMAgeo | End-Member Modelling of Grain-Size Data |

emme2 | Read and Write to an EMME/2 databank |

emmeans | Estimated Marginal Means, aka Least-Squares Means |

EMMIXcskew | Fitting Mixtures of CFUST Distributions |

EMMIXgene | A Mixture Model-Based Approach to the Clustering of Microarray Expression Data |

EMMIXskew | The EM Algorithm and Skew Mixture Distribution |

EMMIXuskew | Fitting Unrestricted Multivariate Skew t Mixture Models |

EMMLi | A Maximum Likelihood Approach to the Analysis of Modularity |

EMMREML | Fitting Mixed Models with Known Covariance Structures |

emoa | Evolutionary Multiobjective Optimization Algorithms |

emojifont | Emoji and Font Awesome in Graphics |

emon | Tools for Environmental and Ecological Survey Design |

emov | Eye Movement Analysis Package for Fixation and Saccade Detection |

EMP | Expected Maximum Profit Classification Performance Measure |

EmpiricalCalibration | Routines for Performing Empirical Calibration of Observational Study Estimates |

empiricalFDR.DESeq2 | Simulation-Based False Discovery Rate in RNA-Seq |

emplik | Empirical Likelihood Ratio for Censored/Truncated Data |

emplik2 | Empirical Likelihood Ratio Test for Two Samples with Censored Data |

EMSaov | The Analysis of Variance with EMS |

EMSC | Extended Multiplicative Signal Correction |

EMT | Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data |

emulator | Bayesian Emulation of Computer Programs |

emuR | Main Package of the EMU Speech Database Management System |

EMVS | The Expectation-Maximization Approach to Bayesian Variable Selection |

enaR | Tools for Ecological Network Analysis |

enc | Portable Tools for 'UTF-8' Character Data |

encode | Represent Ordered Lists and Pairs as Strings |

endogenous | Classical Simultaneous Equation Models |

endogMNP | R Package for Fitting Multinomial Probit Models with Endogenous Selection |

endorse | Bayesian Measurement Models for Analyzing Endorsement Experiments |

endtoend | Transmissions and Receptions in an End to End Network |

energy | E-Statistics: Multivariate Inference via the Energy of Data |

EnergyOnlineCPM | Distribution Free Multivariate Control Chart Based on Energy Test |

energyr | Data Published by the United States Federal Energy Regulatory Commission |

enetLTS | Robust and Sparse Methods for High Dimensional Linear and Logistic Regression |

eNetXplorer | Quantitative Exploration of Elastic Net Families for Generalized Linear Models |

english | Translate Integers into English |

EngrExpt | Data sets from "Introductory Statistics for Engineering Experimentation" |

engsoccerdata | English and European Soccer Results 1871-2016 |

ENiRG | Ecological Niche in R and GRASS |

ENMeval | Automated Runs and Evaluations of Ecological Niche Models |

ENmisc | Neuwirth miscellaneous |

enpls | Ensemble Partial Least Squares Regression |

enrichR | Provides an R Interface to 'Enrichr' |

enrichvs | Enrichment assessment of virtual screening approaches |

enrichwith | Methods to Enrich R Objects with Extra Components |

EnsCat | Clustering of Categorical Data |

EnsembleBase | Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling |

ensembleBMA | Probabilistic Forecasting using Ensembles and Bayesian Model Averaging |

EnsembleCV | Extensible Package for Cross-Validation-Based Integration of Base Learners |

ensembleEN | Ensembling Regularized Linear Models |

ensembleMOS | Ensemble Model Output Statistics |

EnsemblePCReg | Extensible Package for Principal-Component-Regression-Based Heterogeneous Ensemble Meta-Learning |

EnsemblePenReg | Extensible Classes and Methods for Penalized-Regression-Based Integration of Base Learners |

ensemblepp | Ensemble Postprocessing Data Sets |

ensembleR | Ensemble Models in R |

ensurer | Ensure Values at Runtime |

entropart | Entropy Partitioning to Measure Diversity |

entropy | Estimation of Entropy, Mutual Information and Related Quantities |

EntropyEstimation | Estimation of Entropy and Related Quantities |

EntropyExplorer | Tools for Exploring Differential Shannon Entropy, Differential Coefficient of Variation and Differential Expression |

envalysis | Miscellaneous Functions for Environmental Analyses |

EnvCpt | Detection of Structural Changes in Climate and Environment Time Series |

envDocument | Document the R Working Environment |

enveomics.R | Various Utilities for Microbial Genomics and Metagenomics |

enviGCMS | GC/LC-MS Data Analysis for Environmental Science |

enviPat | Isotope Pattern, Profile and Centroid Calculation for Mass Spectrometry |

enviPick | Peak Picking for High Resolution Mass Spectrometry Data |

envirem | Generation of ENVIREM Variables |

EnviroPRA | Environmental Probabilistic Risk Assessment Tools |

EnviroStat | Statistical Analysis of Environmental Space-Time Processes |

envlpaster | Enveloping the Aster Model |

EnvNicheR | Niche Estimation |

EnvStats | Package for Environmental Statistics, Including US EPA Guidance |

epade | Easy Plots |

epandist | Statistical Functions for the Censored and Uncensored Epanechnikov Distribution |

epanet2toolkit | Call 'EPANET' Functions to Simulate Pipe Networks |

epanetReader | Read Epanet Files into R |

ePCR | Ensemble Penalized Cox Regression for Survival Prediction |

Epi | A Package for Statistical Analysis in Epidemiology |

epibasix | Elementary Epidemiological Functions for Epidemiology and Biostatistics |

EpiBayes | Implements Hierarchical Bayesian Models for Epidemiological Applications |

epicontacts | Handling, Visualisation and Analysis of Epidemiological Contacts |

EpiContactTrace | Epidemiological Tool for Contact Tracing |

EpiCurve | Plot an Epidemic Curve |

epidata | Tools to Retrieve Economic Policy Institute Data Library Extracts |

epiDisplay | Epidemiological Data Display Package |

EpiDynamics | Dynamic Models in Epidemiology |

EpiEstim | EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves |

EpiILM | Spatial and Network Based Individual Level Models for Epidemics |

EpiILMCT | Continuous Time Distance-Based and Network-Based Individual Level Models for Epidemics |

EpiModel | Mathematical Modeling of Infectious Disease Dynamics |

epinet | Epidemic/Network-Related Tools |

epiphy | Analysis of Plant Disease Epidemics |

epiR | Tools for the Analysis of Epidemiological Data |

episensr | Basic Sensitivity Analysis of Epidemiological Results |

episheet | Rothman's Episheet |

episode | Estimation with Penalisation in Systems of Ordinary Differential Equations |

episplineDensity | Density Estimation with Soft Information by Exponential Epi-splines |

epistasis | Detecting Epistatic Selection with Partially Observed Genotype Data |

EpiStats | Tools for Epidemiologists |

EpistemicGameTheory | Constructing an Epistemic Model for the Games with Two Players |

epitab | Flexible Contingency Tables for Epidemiology |

epitools | Epidemiology Tools |

epitrix | Small Helpers and Tricks for Epidemics Analysis |

Eplot | Plotting longitudinal series |

eply | Apply a Function Over Expressions |

epoc | EPoC (Endogenous Perturbation analysis of Cancer) |

epr | Easy Polynomial Regression |

epubr | Read EPUB File Metadata and Text |

epxToR | Import 'Epidata' XML Files '.epx' |

EQL | Extended-Quasi-Likelihood-Function (EQL) |

eqs2lavaan | EQS Output Conversion to lavaan Functions |

eqtl | Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis |

equalCovs | Testing the Equality of Two Covariance Matrices |

Equalden.HD | Testing the Equality of a High Dimensional Set of Densities |

equaltestMI | Examine Measurement Invariance via Equivalence Testing and Projection Method |

equate | Observed-Score Linking and Equating |

equateIRT | IRT Equating Methods |

equateMultiple | Equating of Multiple Forms |

equivalence | Provides Tests and Graphics for Assessing Tests of Equivalence |

EQUIVNONINF | Testing for Equivalence and Noninferiority |

equSA | Estimate Directed and Undirected Graphical Models and Construct Networks |

erah | Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics |

erboost | Nonparametric Multiple Expectile Regression via ER-Boost |

ercv | Fitting Tails by the Empirical Residual Coefficient of Variation |

erer | Empirical Research in Economics with R |

ergm | Fit, Simulate and Diagnose Exponential-Family Models for Networks |

ergm.count | Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges |

ergm.ego | Fit, Simulate and Diagnose Exponential-Family Random Graph Models to Egocentrically Sampled Network Data |

ergm.graphlets | ERG Modeling Based on Graphlet Properties |

ergm.rank | Fit, Simulate and Diagnose Exponential-Family Models for Rank-Order Relational Data |

ergm.userterms | User-specified terms for the statnet suite of packages |

ergmharris | Local Health Department network data set |

erhcv | Equi-Rank Hierarchical Clustering Validation |

eRm | Extended Rasch Modeling |

ERP | Significance Analysis of Event-Related Potentials Data |

erp.easy | Event-Related Potential (ERP) Data Exploration Made Easy |

erpR | Event-related potentials (ERP) analysis, graphics and utility functions |

errint | Builds Error Intervals |

errorist | Automatically Search Errors or Warnings |

errorizer | Function Errorizer |

errorlocate | Locate Errors with Validation Rules |

errors | Uncertainty Propagation for R Vectors |

ERSA | Exploratory Regression 'Shiny' App |

ES | Edge Selection |

esaBcv | Estimate Number of Latent Factors and Factor Matrix for Factor Analysis |

esaddle | Extended Empirical Saddlepoint Density Approximation |

esaps | Indicators of Electoral Systems and Party Systems |

esc | Effect Size Computation for Meta Analysis |

ESEA | ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis |

eseis | Environmental Seismology Toolbox |

ESG | ESG - A package for asset projection |

ESGtoolkit | Toolkit for the simulation of financial assets and interest rates models |

eshrink | Shrinkage for Effect Estimation |

ESKNN | Ensemble of Subset of K-Nearest Neighbours Classifiers for Classification and Class Membership Probability Estimation |

esmisc | Misc Functions of Eduard SzÃ¶cs |

esmprep | Data Preparation During and After the Use of the Experience Sampling Methodology (ESM) |

esreg | Joint Quantile and Expected Shortfall Regression |

essHist | The Essential Histogram |

essurvey | Download Data from the European Social Survey on the Fly |

estatapi | R Interface to e-Stat API |

EstCRM | Calibrating Parameters for the Samejima's Continuous IRT Model |

ESTER | Efficient Sequential Testing with Evidence Ratios |

EstHer | Estimation of Heritability in High Dimensional Sparse Linear Mixed Models using Variable Selection |

estimability | Tools for Assessing Estimability of Linear Predictions |

EstimateGroupNetwork | Perform the Joint Graphical Lasso and Selects Tuning Parameters |

estimatr | Fast Estimators for Design-Based Inference |

estout | Estimates Output |

estprod | Estimation of Production Functions |

EstSimPDMP | Estimation and Simulation for PDMPs |

estudy2 | An Implementation of Parametric and Nonparametric Event Study |

esvis | Visualization and Estimation of Effect Sizes |

etable | Easy Table |

ETAS | Modeling Earthquake Data Using ETAS Model |

etasFLP | Mixed FLP and ML Estimation of ETAS Space-Time Point Processes |

ETC | Equivalence to control |

ether | Interaction with the 'Ethereum' Blockchain |

EthSEQ | Ethnicity Annotation from Whole Exome Sequencing Data |

etl | Extract-Transform-Load Framework for Medium Data |

ETLUtils | Utility Functions to Execute Standard Extract/Transform/Load Operations (using Package 'ff') on Large Data |

etm | Empirical Transition Matrix |

etma | Epistasis Test in Meta-Analysis |

etrunct | Computes Moments of Univariate Truncated t Distribution |

etseed | Client for 'etcd', a 'Key-value' Database |

eulerian | eulerian: A package to find eulerian paths from graphs |

eulerr | Area-Proportional Euler and Venn Diagrams with Circles or Ellipses |

europepmc | R Interface to the Europe PubMed Central RESTful Web Service |

europop | Historical Populations of European Cities, 1500-1800 |

EurosarcBayes | Bayesian Single Arm Sample Size Calculation Software |

eurostat | Tools for Eurostat Open Data |

eva | Extreme Value Analysis with Goodness-of-Fit Testing |

EvalEst | Dynamic Systems Estimation - Extensions |

evaluate | Parsing and Evaluation Tools that Provide More Details than the Default |

EvaluationMeasures | Collection of Model Evaluation Measure Functions |

evaluator | Quantified Risk Assessment Toolkit |

EValue | Sensitivity Analyses for Unmeasured Confounding in Observational Studies and Meta-Analyses |

Evapotranspiration | Modelling Actual, Potential and Reference Crop Evapotranspiration |

evclass | Evidential Distance-Based Classification |

evclust | Evidential Clustering |

EvCombR | Evidence Combination in R |

evd | Functions for Extreme Value Distributions |

evdbayes | Bayesian Analysis in Extreme Value Theory |

event | Event History Procedures and Models |

eventdataR | Event Data Repository |

eventInterval | Sequential Event Interval Analysis |

events | Store and manipulate event data |

EventStudy | Event Study Analysis |

evidence | Analysis of Scientific Evidence Using Bayesian and Likelihood Methods |

evidenceFactors | Reporting Tools for Sensitivity Analysis of Evidence Factors in Observational Studies |

evir | Extreme Values in R |

evmix | Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation |

evobiR | Comparative and Population Genetic Analyses |

evolqg | Tools for Evolutionary Quantitative Genetics |

EvolutionaryGames | Important Concepts of Evolutionary Game Theory |

evolvability | Calculation of Evolvability Parameters |

Evomorph | Evolutionary Morphometric Simulation |

evoper | Evolutionary Parameter Estimation for 'Repast Simphony' Models |

EvoRAG | Evolutionary Rates Across Gradients |

evt0 | Mean of order p, peaks over random threshold Hill and high quantile estimates |

evtree | Evolutionary Learning of Globally Optimal Trees |

EW | Edgeworth Expansion |

EWGoF | Goodness-of-Fit Tests for the Exponential and Two-Parameter Weibull Distributions |

ewoc | Escalation with Overdose Control |

Exact | Unconditional Exact Test |

exact2x2 | Exact Tests and Confidence Intervals for 2x2 Tables |

exactci | Exact P-Values and Matching Confidence Intervals for Simple Discrete Parametric Cases |

ExactCIdiff | Inductive Confidence Intervals for the difference between two proportions |

exactLoglinTest | Monte Carlo Exact Tests for Log-linear models |

exactmeta | Exact fixed effect meta analysis |

exactRankTests | Exact Distributions for Rank and Permutation Tests |

exampletestr | Help for Writing Unit Tests Based on Function Examples |

exams | Automatic Generation of Exams in R |

ExceedanceTools | Confidence regions for exceedance sets and contour lines |

excel.link | Convenient Data Exchange with Microsoft Excel |

excerptr | Excerpt Structuring Comments from Your Code File and Set a Table of Contents |

ExcessMass | Excess Mass Calculation and Plots |

exCon | Interactive Exploration of Contour Data |

excursions | Excursion Sets and Contour Credibility Regions for Random Fields |

exif | Read EXIF Metadata from JPEGs |

exifr | EXIF Image Data in R |

ExomeDepth | Calls Copy Number Variants from Targeted Sequence Data |

exp2flux | Convert Gene EXPression Data to FBA FLUXes |

ExPanDaR | Explore Panel Data Interactively |

expandFunctions | Feature Matrix Builder |

expands | Expanding Ploidy and Allele-Frequency on Nested Subpopulations |

ExpDE | Modular Differential Evolution for Experimenting with Operators |

ExpDes | Experimental Designs |

ExpDes.pt | Pacote Experimental Designs (Portuguese) |

experiment | R Package for Designing and Analyzing Randomized Experiments |

expert | Modeling without data using expert opinion |

expint | Exponential Integral and Incomplete Gamma Function |

ExplainPrediction | Explanation of Predictions for Classification and Regression Models |

explor | Interactive Interfaces for Results Exploration |

exploreR | Tools for Quickly Exploring Data |

expm | Matrix Exponential, Log, 'etc' |

expoRkit | Expokit in R |

ExPosition | Exploratory analysis with the singular value decomposition |

expoTree | Calculate density dependent likelihood of a phylogenetic tree |

expp | Spatial Analysis of Extra-Pair Paternity |

ExpRep | Experiment Repetitions |

exprso | Rapid Deployment of Machine Learning Algorithms |

expsmooth | Data Sets from "Forecasting with Exponential Smoothing" |

expss | Tables with Labels and Some Useful Functions from Spreadsheets and 'SPSS' Statistics |

exptest | Tests for Exponentiality |

exreport | Fast, Reliable and Elegant Reproducible Research |

EXRQ | Extreme Regression of Quantiles |

exsic | Convenience Functions for Botanists to Create Specimens Indices |

extdplyr | Data Manipulation Extensions of 'Dplyr' and 'Tidyr' |

exteriorMatch | Constructs the Exterior Match from Two Matched Control Groups |

extfunnel | Additional Funnel Plot Augmentations |

extlasso | Maximum penalized likelihood estimation with extended lasso penalty |

ExtMallows | An Extended Mallows Model and Its Hierarchical Version for Ranked Data Aggregation |

extraBinomial | Extra-binomial approach for pooled sequencing data |

extracat | Categorical Data Analysis and Visualization |

extraDistr | Additional Univariate and Multivariate Distributions |

extrafont | Tools for using fonts |

extrafontdb | Package for holding the database for the extrafont package |

extraTrees | Extremely Randomized Trees (ExtraTrees) Method for Classification and Regression |

ExtremeBounds | Extreme Bounds Analysis (EBA) |

extremefit | Estimation of Extreme Conditional Quantiles and Probabilities |

extRemes | Extreme Value Analysis |

extremeStat | Extreme Value Statistics and Quantile Estimation |

extremevalues | Univariate Outlier Detection |

extremogram | Estimation of Extreme Value Dependence for Time Series Data |

extWeibQuant | Estimate Lower Extreme Quantile with the Censored Weibull MLE and Censored Weibull Mixture |

exuber | Econometric Analysis of Explosive Time Series |

eyelinker | Load Raw Data from Eyelink Eye Trackers |

eyetracking | Eyetracking Helper Functions |

eyetrackingR | Eye-Tracking Data Analysis |

ez | Easy Analysis and Visualization of Factorial Experiments |

ezec | Easy Interface to Effective Concentration Calculations |

ezglm | selects significant non-additive interaction between two variables using fast GLM implementation |

ezknitr | Avoid the Typical Working Directory Pain When Using 'knitr' |

ezsim | provide an easy to use framework to conduct simulation |

ezsummary | Generate Data Summary in a Tidy Format |

fabCI | FAB Confidence Intervals |

fabricatr | Imagine Your Data Before You Collect It |

face | Fast Covariance Estimation for Sparse Functional Data |

facebook.S4 | Access to Facebook API V2 via a Set of S4 Classes |

facerec | An Interface for Face Recognition |

facilitation | A C++ Framework for Plant-Plant Interaction IBMs |

FacPad | Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment |

FactMixtAnalysis | Factor Mixture Analysis with covariates |

FACTMLE | Maximum Likelihood Factor Analysis |

FactoClass | Combination of Factorial Methods and Cluster Analysis |

factoextra | Extract and Visualize the Results of Multivariate Data Analyses |

FactoInvestigate | Automatic Description of Factorial Analysis |

FactoMineR | Multivariate Exploratory Data Analysis and Data Mining |

factoptd | Factorial Optimal Designs for Two-Colour cDNA Microarray Experiments |

factorcpt | Simultaneous Change-Point and Factor Analysis |

factorMerger | The Merging Path Plot |

factorplot | Graphical Presentation of Simple Contrasts |

factorQR | Bayesian quantile regression factor models |

FactorsR | Identification of the Factors Affecting Species Richness |

factorstochvol | Bayesian Estimation of (Sparse) Latent Factor Stochastic Volatility Models |

Factoshiny | Perform Factorial Analysis from 'FactoMineR' with a Shiny Application |

factualR | thin wrapper for the Factual.com server API |

FADA | Variable Selection for Supervised Classification in High Dimension |

FAdist | Distributions that are Sometimes Used in Hydrology |

Fahrmeir | Data from the Book "Multivariate Statistical Modelling Based on Generalized Linear Models", First Edition, by Ludwig Fahrmeir and Gerhard Tutz |

fail | File Abstraction Interface Layer (FAIL) |

faisalconjoint | Faisal Conjoint Model: A New Approach to Conjoint Analysis |

fakemake | Mock the Unix Make Utility |

fakeR | Simulates Data from a Data Frame of Different Variable Types |

falcon | Finding Allele-Specific Copy Number in Next-Generation Sequencing Data |

falconx | Finding Allele-Specific Copy Number in Whole-Exome Sequencing Data |

fam2r | From 'Familias' to R |

fame | Interface for FAME Time Series Database |

FamEvent | Family Age-at-Onset Data Simulation and Penetrance Estimation |

Familias | Probabilities for Pedigrees Given DNA Data |

FAMILY | A Convex Formulation for Modeling Interactions with Strong Heredity |

FAmle | Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions |

famSKATRC | Family Sequence Kernel Association Test for Rare and Common Variants |

FAMT | Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data |

fanc | Penalized Likelihood Factor Analysis via Nonconvex Penalty |

fANCOVA | Nonparametric Analysis of Covariance |

fancycut | A Fancy Version of 'base::cut' |

fanovaGraph | Building Kriging Models from FANOVA Graphs |

fanplot | Visualisation of Sequential Probability Distributions Using Fan Charts |

fansi | ANSI Control Sequence Aware String Functions |

FAOSTAT | Download Data from the FAOSTAT Database of the Food and Agricultural Organization (FAO) of the United Nations |

faoutlier | Influential Case Detection Methods for Factor Analysis and Structural Equation Models |

far | Modelization for Functional AutoRegressive Processes |

faraway | Functions and Datasets for Books by Julian Faraway |

farff | A Faster 'ARFF' File Reader and Writer |

FarmSelect | Factor Adjusted Robust Model Selection |

FarmTest | Factor Adjusted Robust Multiple Testing |

FASeg | Joint Segmentation of Correlated Time Series |

fAsianOptions | Rmetrics - EBM and Asian Option Valuation |

fasjem | A Fast and Scalable Joint Estimator for Learning Multiple Related Sparse Gaussian Graphical Models |

fAssets | Rmetrics - Analysing and Modelling Financial Assets |

fast | Implementation of the Fourier Amplitude Sensitivity Test (FAST) |

fasta | Fast Adaptive Shrinkage/Thresholding Algorithm |

fastAdaboost | a Fast Implementation of Adaboost |

FastBandChol | Fast Estimation of a Covariance Matrix by Banding the Cholesky Factor |

fastclime | A Fast Solver for Parameterized LP Problems, Constrained L1 Minimization Approach to Sparse Precision Matrix Estimation and Dantzig Selector |

fastcluster | Fast Hierarchical Clustering Routines for R and 'Python' |

fastcmh | Significant Interval Discovery with Categorical Covariates |

fastcox | Lasso and Elastic-Net Penalized Cox's Regression in High Dimensions Models using the Cocktail Algorithm |

fastdigest | Fast, Low Memory-Footprint Digests of R Objects |

fastDummies | Fast Creation of Dummy (Binary) Columns and Rows from Categorical Variables |

fasteraster | Raster Image Processing and Vector Recognition |

fasterize | Fast Polygon to Raster Conversion |

fastGHQuad | Fast Rcpp implementation of Gauss-Hermite quadrature |

FastGP | Efficiently Using Gaussian Processes with Rcpp and RcppEigen |

fastGraph | Fast Drawing and Shading of Graphs of Statistical Distributions |

FastHCS | FastHCS Robust Algorithm for Principal Component Analysis |

fastHICA | Hierarchical Independent Component Analysis: a Multi-Scale Sparse Non-Orthogonal Data-Driven Basis |

fastICA | FastICA Algorithms to Perform ICA and Projection Pursuit |

FastImputation | Learn from Training Data then Quickly Fill in Missing Data |

fastJT | Efficient Jonckheere-Terpstra Test Statistics for Robust Machine Learning and Genome-Wide Association Studies |

FastKM | A Fast Multiple-Kernel Method Based on a Low-Rank Approximation |

FastKNN | Fast k-Nearest Neighbors |

fastLink | Fast Probabilistic Record Linkage with Missing Data |

fastM | Fast Computation of Multivariate M-Estimators |

fastmaRching | Fast Marching Method for Modelling Evolving Boundaries |

fastmatch | Fast match() function |

fastnet | Large-Scale Social Network Analysis |

FastPCS | FastPCS Robust Fit of Multivariate Location and Scatter |

fastpseudo | Fast Pseudo Observations |

fastqcr | Quality Control of Sequencing Data |

fastR | Foundations and Applications of Statistics Using R |

fastR2 | Foundations and Applications of Statistics Using R (2nd Edition) |

FastRCS | Fits the FastRCS Robust Multivariable Linear Regression Model |

fastrtext | 'fastText' Wrapper for Text Classification and Word Representation |

FastRWeb | Fast Interactive Framework for Web Scripting Using R |

FastSF | Fast Structural Filtering |

fastSOM | Fast Calculation of Spillover Measures |

fastTextR | An Interface to the 'fastText' Library |

fasttime | Fast Utility Function for Time Parsing and Conversion |

fat2Lpoly | Two-Locus Family-Based Association Test with Polytomous Outcome |

FateID | Quantification of Fate Bias in Multipotent Progenitors |

FatTailsR | Kiener Distributions and Fat Tails in Finance |

fauxpas | HTTP Error Helpers |

favnums | A Dataset of Favourite Numbers |

FAwR | Functions and Datasets for "Forest Analytics with R" |

fbar | An Extensible Approach to Flux Balance Analysis |

fBasics | Rmetrics - Markets and Basic Statistics |

fbati | Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families |

FBFsearch | Algorithm for Searching the Space of Gaussian Directed Acyclic Graph Models Through Moment Fractional Bayes Factors |

FBN | FISH Based Normalization and Copy Number inference of SNP microarray data |

fBonds | Rmetrics - Pricing and Evaluating Bonds |

fbRads | Analyzing and Managing Facebook Ads from R |

fbRanks | Association Football (Soccer) Ranking via Poisson Regression |

fbroc | Fast Algorithms to Bootstrap Receiver Operating Characteristics Curves |

fcd | Fused Community Detection |

fCertificates | Basics of Certificates and Structured Products Valuation |

FCGR | Fatigue Crack Growth in Reliability |

fChange | Change Point Analysis in Functional Data |

fclust | Fuzzy Clustering |

fcm | Inference of Fuzzy Cognitive Maps (FCMs) |

FCMapper | Fuzzy Cognitive Mapping |

FCNN4R | Fast Compressed Neural Networks for R |

fCopulae | Rmetrics - Bivariate Dependence Structures with Copulae |

fcr | Functional Concurrent Regression for Sparse Data |

fcros | A Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations |

fcuk | The Ultimate Helper for Clumsy Fingers |

FD | Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology |

fda | Functional Data Analysis |

fda.usc | Functional Data Analysis and Utilities for Statistical Computing |

fdadensity | Functional Data Analysis for Density Functions by Transformation to a Hilbert Space |

fdakma | Functional Data Analysis: K-Mean Alignment |

fdaMixed | Functional Data Analysis in a Mixed Model Framework |

fdANOVA | Analysis of Variance for Univariate and Multivariate Functional Data |

fdapace | Functional Data Analysis and Empirical Dynamics |

fdaPDE | Functional Data Analysis and Partial Differential Equations; Statistical Analysis of Functional and Spatial Data, Based on Regression with Partial Differential Regularizations |

fdasrvf | Elastic Functional Data Analysis |

fdatest | Interval Testing Procedure for Functional Data |

FDboost | Boosting Functional Regression Models |

fdcov | Analysis of Covariance Operators |

FDGcopulas | Multivariate Dependence with FDG Copulas |

fDMA | Dynamic Model Averaging and Dynamic Model Selection for Continuous Outcomes |

fdrci | Permutation-Based FDR Point and Confidence Interval Estimation |

fdrDiscreteNull | False Discovery Rate Procedures Under Discrete and Heterogeneous Null Distributions |

FDRreg | False discovery rate regression |

FDRsampsize | Compute Sample Size that Meets Requirements for Average Power and FDR |

FDRSeg | FDR-Control in Multiscale Change-Point Segmentation |

fdrtool | Estimation of (Local) False Discovery Rates and Higher Criticism |

fds | Functional data sets |

fdth | Frequency Distribution Tables, Histograms and Polygons |

FeaLect | Scores Features for Feature Selection |

feather | R Bindings to the Feather 'API' |

feature | Local Inferential Feature Significance for Multivariate Kernel Density Estimation |

featurefinder | Feature Finder |

FeatureHashing | Creates a Model Matrix via Feature Hashing with a Formula Interface |

features | Feature Extraction for Discretely-Sampled Functional Data |

featurizer | Some Helper Functions that Help Create Features from Data |

febr | Free Brazilian Repository for Open Soil Data |

fechner | Fechnerian Scaling of Discrete Object Sets |

fecR | Fishing Effort Calculator in R |

FedData | Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources |

federalregister | Client Package for the U.S. Federal Register API |

fedreporter | Interface to Federal 'RePORTER' API |

FeedbackTS | Analysis of Feedback in Time Series |

feedeR | Read RSS/Atom Feeds from R |

fence | Using Fence Methods for Model Selection |

FENmlm | Fixed Effects Nonlinear Maximum Likelihood Models |

fergm | Estimation and Fit Assessment of Frailty Exponential Random Graph Models |

fermicatsR | Fermi Large Area Telescope Catalogs |

fetchR | Calculate Wind Fetch |

fExoticOptions | Rmetrics - Pricing and Evaluating Exotic Option |

fExpressCertificates | fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables |

fExtremes | Rmetrics - Modelling Extreme Events in Finance |

ff | Memory-Efficient Storage of Large Data on Disk and Fast Access Functions |

ffbase | Basic Statistical Functions for Package 'ff' |

FFD | Freedom from Disease |

FField | Force field simulation for a set of points |

ffmanova | Fifty-fifty MANOVA |

ffstream | Forgetting Factor Methods for Change Detection in Streaming Data |

FFTrees | Generate, Visualise, and Evaluate Fast-and-Frugal Decision Trees |

fftw | Fast FFT and DCT Based on the FFTW Library |

fftwtools | Wrapper for 'FFTW3' Includes: One-Dimensional Univariate, One-Dimensional Multivariate, and Two-Dimensional Transform |

fgac | Generalized Archimedean Copula |

FGalgorithm | Flury and Gautschi algorithms |

fGarch | Rmetrics - Autoregressive Conditional Heteroskedastic Modelling |

fgof | Fast Goodness-of-fit Test |

fgpt | Floating Grid Permutation Technique |

FGSG | Feature Grouping and Selection Over an Undirected Graph |

fgui | Function GUI |

FHDI | Fractional Hot Deck and Fully Efficient Fractional Imputation |

FHtest | Tests for Right and Interval-Censored Survival Data Based on the Fleming-Harrington Class |

FI | Provide functions for forest inventory calculations |

FIACH | Retrospective Noise Control for fMRI |

FIAR | Functional Integration Analysis in R |

fICA | Classical, Reloaded and Adaptive FastICA Algorithms |

fields | Tools for Spatial Data |

FieldSim | Random Fields (and Bridges) Simulations |

fiery | A Lightweight and Flexible Web Framework |

fiftystater | Map Data to Visualize the Fifty U.S. States with Alaska and Hawaii Insets |

filehash | Simple Key-Value Database |

filehashSQLite | Simple key-value database using SQLite |

filelock | Portable File Locking |

filematrix | File-Backed Matrix Class with Convenient Read and Write Access |

filenamer | Easy Management of File Names |

fileplyr | Chunk Processing or Split-Apply-Combine on Delimited Files and Distributed Dataframes |

files | Effective File Navigation from the R Console |

filesstrings | Handy File and String Manipulation |

FILEST | Fine-Level Structure Simulator |

filling | Matrix Completion, Imputation, and Inpainting Methods |

fImport | Rmetrics - Importing Economic and Financial Data |

finalfit | Quickly Create Elegant Regression Results Tables and Plots when Modelling |

FinAna | Financial Analysis and Regression Diagnostic Analysis |

FinancialInstrument | Financial Instrument Model Infrastructure and Meta-Data |

FinancialMath | Financial Mathematics for Actuaries |

FinAsym | Classifies implicit trading activity from market quotes and computes the probability of informed trading |

FinCal | Time Value of Money, Time Series Analysis and Computational Finance |

finch | Parse Darwin Core Files |

FinCovRegularization | Covariance Matrix Estimation and Regularization for Finance |

FindAllRoots | Find all root(s) of the equation and Find root(s) of the equation by dichotomy |

FindIt | Finding Heterogeneous Treatment Effects |

findpython | Functions to Find an Acceptable Python Binary |

findR | Find Code Snippets, R Scripts, R Markdown, PDF and Text Files with Pattern Matching |

findviews | A View Generator for Multidimensional Data |

FinePop | Fine-Scale Population Analysis |

fingerprint | Functions to Operate on Binary Fingerprint Data |

fingerPro | Sediment Source Fingerprinting |

fingertipsR | Fingertips Data for Public Health |

finiteruinprob | Computation of the Probability of Ruin Within a Finite Time Horizon |

finreportr | Financial Data from U.S. Securities and Exchange Commission |

fishdata | A Small Collection of Fish Population Datasets |

fisheyeR | Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R |

FisHiCal | Iterative FISH-based Calibration of Hi-C Data |

fishkirkko2015 | Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland |

fishmethods | Fishery Science Methods and Models in R |

fishMod | Fits Poisson-Sum-of-Gammas GLMs, Tweedie GLMs, and Delta Log-Normal Models |

fishmove | Prediction of Fish Movement Parameters |

FishResp | Analytical Tool for Aquatic Respirometry |

FIT | Transcriptomic Dynamics Models in Field Conditions |

fit.models | Compare Fitted Models |

fit4NM | NONMEM platform |

FitAR | Subset AR Model Fitting |

FitARMA | FitARMA: Fit ARMA or ARIMA using fast MLE algorithm |

fitbitScraper | Scrapes Data from Fitbit |

fitdc | Garmin FIT File Decoder |

fitdistrplus | Help to Fit of a Parametric Distribution to Non-Censored or Censored Data |

fitDRC | Fitting Density Ratio Classes |

fitODBOD | Modeling Over Dispersed Binomial Outcome Data Using BMD and ABD |

fitplc | Fit Hydraulic Vulnerability Curves |

fitPoly | Genotype Calling for Bi-Allelic Marker Assays |

FITSio | FITS (Flexible Image Transport System) Utilities |

fitteR | Fit Hundreds of Theoretical Distributions to Empirical Data |

fitTetra | fitTetra is an R package for assigning tetraploid genotype scores |

fitur | Fit Univariate Distributions |

fivethirtyeight | Data and Code Behind the Stories and Interactives at 'FiveThirtyEight' |

FixedPoint | Algorithms for Finding Fixed Point Vectors of Functions |

fixedTimeEvents | The Distribution of Distances Between Discrete Events in Fixed Time |

fixerapi | An R Client for the "Fixer.io" Currency API |

FixSeqMTP | Fixed Sequence Multiple Testing Procedures |

fizzbuzzR | Fizz Buzz Implementation |

FKF | Fast Kalman Filter |

flacco | Feature-Based Landscape Analysis of Continuous and Constrained Optimization Problems |

flam | Fits Piecewise Constant Models with Data-Adaptive Knots |

flan | FLuctuation ANalysis on Mutation Models |

flare | Family of Lasso Regression |

flars | Functional LARS |

flashClust | Implementation of optimal hierarchical clustering |

flatr | Transforms Contingency Tables to Data Frames, and Analyses Them |

flatxml | Tools for Working with XML Files as R Dataframes |

flexclust | Flexible Cluster Algorithms |

flexCWM | Flexible Cluster-Weighted Modeling |

flexdashboard | R Markdown Format for Flexible Dashboards |

FlexDir | Tools to Work with the Flexible Dirichlet Distribution |

FlexGAM | Generalized Additive Models with Flexible Response Functions |

flexmet | Flexible Latent Trait Metrics using the Filtered Monotonic Polynomial Item Response Model |

flexmix | Flexible Mixture Modeling |

FlexParamCurve | Tools to Fit Flexible Parametric Curves |

flexPM | Flexible Parametric Models for Censored and Truncated Data |

flexrsurv | Flexible Relative Survival Analysis |

flexsurv | Flexible Parametric Survival and Multi-State Models |

flexsurvcure | Flexible Parametric Cure Models |

flextable | Functions for Tabular Reporting |

flifo | Don't Get Stuck with Stacks in R |

FLightR | Hidden Markov Model for Solar Geolocation Archival Tags |

flip | Multivariate Permutation Tests |

flippant | Dithionite Scramblase Assay Analysis |

flipscores | Robust Testing in GLMs |

FLLat | Fused Lasso Latent Feature Model |

float | 32-Bit Floats |

flock | Process Synchronization Using File Locks |

flood | Statistical Methods for the (Regional) Analysis of Flood Frequency |

FloodMapper | Cross-Scale Flooding Prediction under Heavy Precipitation |

flora | Tools for Interacting with the Brazilian Flora 2020 |

flowDiv | Cytometric Diversity Indices from Gated Data |

flower | Tools for characterizing flowering traits |

flowfield | Forecasts future values of a univariate time series |

flowr | Streamlining Design and Deployment of Complex Workflows |

FlowRegEnvCost | The Environmental Costs of Flow Regulation |

flows | Flow Selection and Analysis |

FlowScreen | Daily Streamflow Trend and Change Point Screening |

FLR | Fuzzy Logic Rule Classifier |

flsa | Path algorithm for the general Fused Lasso Signal Approximator |

FLSSS | Multi-Threaded Multidimensional Fixed Size Subset Sum Solver and Extension to General-Purpose Knapsack Problem |

fluoSurv | Estimate Insect Survival from Fluorescence Data |

Flury | Data Sets from Flury, 1997 |

flux | Flux rate calculation from dynamic closed chamber measurements |

fluxweb | Estimate Energy Fluxes in Food Webs |

fma | Data Sets from "Forecasting: Methods and Applications" by Makridakis, Wheelwright & Hyndman (1998) |

fmbasics | Financial Market Building Blocks |

FMC | Factorial Experiments with Minimum Level Changes |

fmdates | Financial Market Date Calculations |

FME | A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis |

fmlogcondens | Fast Multivariate Log-Concave Density Estimation |

FMP | Filtered Monotonic Polynomial IRT Models |

fmri | Analysis of fMRI Experiments |

fmriqa | Functional MRI Quality Assurance Routines |

fmrs | Variable Selection in Finite Mixture of AFT Regression and FMR |

fmsb | Functions for Medical Statistics Book with some Demographic Data |

FMsmsnReg | Regression Models with Finite Mixtures of Skew Heavy-Tailed Errors |

FMStable | Finite Moment Stable Distributions |

fmt | Variance estimation of FMT method (Fully Moderated t-statistic) |

fMultivar | Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions |

FNN | Fast Nearest Neighbor Search Algorithms and Applications |

fNonlinear | Rmetrics - Nonlinear and Chaotic Time Series Modelling |

foba | greedy variable selection |

focusedMDS | Focused, Interactive Multidimensional Scaling |

foghorn | Summarize CRAN Check Results in the Terminal |

fold | A Self-Describing Dataset Format and Interface |

fontBitstreamVera | Fonts with 'Bitstream Vera Fonts' License |

fontcm | Computer Modern font for use with extrafont package |

fontHind | Additional 'ggplot2' Themes Using 'Hind' Fonts |

fontLiberation | Liberation Fonts |

fontMPlus | Additional 'ggplot2' Themes Using 'M+' Fonts |

fontquiver | Set of Installed Fonts |

foodweb | visualisation and analysis of food web networks |

foolbox | Function manipulation toolbox |

fOptions | Rmetrics - Pricing and Evaluating Basic Options |

forams | Foraminifera and Community Ecology Analyses |

forcats | Tools for Working with Categorical Variables (Factors) |

foreach | Provides Foreach Looping Construct for R |

ForeCA | Forecastable Component Analysis |

forecast | Forecasting Functions for Time Series and Linear Models |

ForecastComb | Forecast Combination Methods |

ForecastCombinations | Forecast Combinations |

ForecastFramework | A Basis for Modular Model Creation |

forecastHybrid | Convenient Functions for Ensemble Time Series Forecasts |

forecastSNSTS | Forecasting for Stationary and Non-Stationary Time Series |

forecTheta | Forecasting Time Series by Theta Models |

foreign | Read Data Stored by 'Minitab', 'S', 'SAS', 'SPSS', 'Stata', 'Systat', 'Weka', 'dBase', ... |

forensic | Statistical Methods in Forensic Genetics |

forensim | Statistical tools for the interpretation of forensic DNA mixtures |

foreSIGHT | Systems Insights from Generation of Hydroclimatic Timeseries |

forestControl | Approximate False Positive Rate Control in Selection Frequency for Random Forest |

forestFloor | Visualizes Random Forests with Feature Contributions |

forestinventory | Design-Based Global and Small-Area Estimations for Multiphase Forest Inventories |

forestmodel | Forest Plots from Regression Models |

forestplot | Advanced Forest Plot Using 'grid' Graphics |

forestr | Ecosystem and Canopy Structural Complexity Metrics from LiDAR |

ForestTools | Analyzing Remotely Sensed Forest Data |

ForImp | Imputation of Missing Values Through a Forward Imputation Algorithm |

ForIT | Functions from the 2nd Italian Forest Inventory (INFC) |

FormalSeries | Elementary arithemtic in formal series rings |

formatR | Format R Code Automatically |

formattable | Create 'Formattable' Data Structures |

Formula | Extended Model Formulas |

formula.tools | Programmatic Utilities for Manipulating Formulas, Expressions, Calls, Assignments and Other R Objects |

formulize | Add Formula Interfaces to Modelling Functions |

fortunes | R Fortunes |

forwards | Data from Surveys Conducted by Forwards |

ForwardSearch | Forward Search using asymptotic theory |

fossil | Palaeoecological and Palaeogeographical Analysis Tools |

fourierin | Computes Numeric Fourier Integrals |

fourPNO | Bayesian 4 Parameter Item Response Model |

FourScores | FourScores - A game for two players |

fpa | Spatio-Temporal Fixation Pattern Analysis |

fpc | Flexible Procedures for Clustering |

fpca | Restricted MLE for Functional Principal Components Analysis |

FPCA2D | Two Dimensional Functional Principal Component Analysis |

FPCA3D | Three Dimensional Functional Component Analysis |

fpCompare | Reliable Comparison of Floating Point Numbers |

FPDclustering | PD-Clustering and Factor PD-Clustering |

fpest | Estimating Finite Population Total |

fpmoutliers | Frequent Pattern Mining Outliers |

fPortfolio | Rmetrics - Portfolio Selection and Optimization |

fpow | Computing the noncentrality parameter of the noncentral F distribution |

fpp | Data for "Forecasting: principles and practice" |

fpp2 | Data for "Forecasting: Principles and Practice" (2nd Edition) |

fptdApprox | Approximation of First-Passage-Time Densities for Diffusion Processes |

FPV | Testing Hypotheses via Fuzzy P-Value in Fuzzy Environment |

fracdiff | Fractionally differenced ARIMA aka ARFIMA(p,d,q) models |

fracprolif | Fraction Proliferation via a Quiescent Growth Model |

fractal | A Fractal Time Series Modeling and Analysis Package |

fractaldim | Estimation of fractal dimensions |

FractalParameterEstimation | Simulation and Parameter Estimation of Randomized Sierpinski Carpets using the p-p-p-q-Model |

fractalrock | Generate fractal time series with non-normal returns distribution |

FRACTION | Numeric number into fraction |

fractional | Vulgar Fractions in R |

fragilityindex | Fragility Index |

Fragman | Fragment Analysis in R |

frailtyEM | Fitting Frailty Models with the EM Algorithm |

frailtypack | General Frailty Models: Shared, Joint and Nested Frailty Models with Prediction |

frailtySurv | General Semiparametric Shared Frailty Model |

frair | Tools for Functional Response Analysis |

frambgrowth | Simulation of the Growth of Framboidal and Sunflower Pyrite |

Frames2 | Estimation in Dual Frame Surveys |

franc | Detect the Language of Text |

FRAPO | Financial Risk Modelling and Portfolio Optimisation with R |

frbs | Fuzzy Rule-Based Systems for Classification and Regression Tasks |

FRCC | Fast Regularized Canonical Correlation Analysis |

freegroup | The Free Group |

freeknotsplines | Algorithms for Implementing Free-Knot Splines |

FreeSortR | Free Sorting Data Analysis |

freestats | Statistical algorithms used in common data mining course |

freesurfer | Wrapper Functions for 'Freesurfer' |

freetypeharfbuzz | Deterministic Computation of Text Box Metrics |

FREGAT | Family REGional Association Tests |

fRegression | Rmetrics - Regression Based Decision and Prediction |

FRegSigCom | Functional Regression using Signal Compression Approach |

FREQ | FREQ: Estimate population size from capture frequencies |

freqdist | Frequency Distribution |

freqdom | Frequency Domain Based Analysis: Dynamic PCA |

freqdom.fda | Functional Time Series: Dynamic Functional Principal Components |

freqparcoord | Novel Methods for Parallel Coordinates |

FreqProf | Frequency Profiles Computing and Plotting |

frequencies | Create Frequency Tables with Counts and Rates |

frequencyConnectedness | Spectral Decomposition of Connectedness Measures |

freqweights | Working with Frequency Tables |

FRESA.CAD | Feature Selection Algorithms for Computer Aided Diagnosis |

FrF2 | Fractional Factorial Designs with 2-Level Factors |

FrF2.catlg128 | Catalogues of resolution IV 128 run 2-level fractional factorials up to 33 factors that do have 5-letter words |

frite | Functions Writing Functions |

FRK | Fixed Rank Kriging |

frm | Regression Analysis of Fractional Responses |

frmhet | Regression Analysis of Fractional Responses Under Unobserved Heterogeneity |

frmpd | Regression Analysis of Panel Fractional Responses |

frmqa | The Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance |

fromo | Fast Robust Moments |

frontier | Stochastic Frontier Analysis |

frontiles | Partial Frontier Efficiency Analysis |

frt | Full Randomization Test |

fs | Cross-Platform File System Operations Based on 'libuv' |

FSA | Simple Fisheries Stock Assessment Methods |

FSAdata | Data to Support Fish Stock Assessment ('FSA') Package |

fscaret | Automated Feature Selection from 'caret' |

fsdaR | Robust Data Analysis Through Monitoring and Dynamic Visualization |

FSelector | Selecting Attributes |

FSelectorRcpp | 'Rcpp' Implementation of 'FSelector' Entropy-Based Feature Selection Algorithms with a Sparse Matrix Support |

fsia | Import and Analysis of OMR Data from FormScanner |

FSInteract | Fast Searches for Interactions |

fslr | Wrapper Functions for FSL ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB') |

fso | Fuzzy Set Ordination |

fSRM | Social Relations Analyses with Roles ("Family SRM") |

fst | Lightning Fast Serialization of Data Frames for R |

fsthet | Fst-Heterozygosity Smoothed Quantiles |

FSTpackage | Unified Sequence-Based Association Tests Allowing for Multiple Functional Annotation Scores |

ftDK | A Wrapper for the API of the Danish Parliament |

FTICRMS | Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data |

ftnonpar | Features and Strings for Nonparametric Regression |

fTrading | Rmetrics - Trading and Rebalancing Financial Instruments |

FTRLProximal | FTRL Proximal Implementation for Elastic Net Regression |

fts | R interface to tslib (a time series library in c++) |

ftsa | Functional Time Series Analysis |

ftsspec | Spectral Density Estimation and Comparison for Functional Time Series |

fueleconomy | EPA fuel economy data |

fugeR | FUzzy GEnetic, a machine learning algorithm to construct prediction model based on fuzzy logic |

fullfact | Full Factorial Breeding Analysis |

fulltext | Full Text of 'Scholarly' Articles Across Many Data Sources |

fun | Use R for Fun |

funbarRF | Fungal Species Identification using DNA Barcode with Random Forest |

funchir | Convenience Functions by Michael Chirico |

FunChisq | Chi-Square and Exact Tests for Model-Free Functional Dependency |

FunCluster | Functional Profiling of Microarray Expression Data |

Funclustering | A package for functional data clustering |

FuncMap | Hive Plots of R Package Function Calls |

functional | Curry, Compose, and other higher-order functions |

FunctionalNetworks | An algorithm for gene and gene set network inference |

functools | Functional Programming in R |

funcy | Functional Clustering Algorithms |

funData | An S4 Class for Functional Data |

funFEM | Clustering in the Discriminative Functional Subspace |

funHDDC | Univariate and Multivariate Model-Based Clustering in Group-Specific Functional Subspaces |

fUnitRoots | Rmetrics - Modelling Trends and Unit Roots |

FUNLDA | Genomic Latent Dirichlet Allocation |

funModeling | Exploratory Data Analysis and Data Preparation Tool-Box Book |

funnelR | Funnel Plots for Proportion Data |

funr | Simple Utility Providing Terminal Access to all R Functions |

funrar | Functional Rarity Indices Computation |

funreg | Functional Regression for Irregularly Timed Data |

FUNTA | Functional Tangential Angle Pseudo-Depth |

funtimes | Functions for Time Series Analysis |

furniture | Tables for Quantitative Scientists |

furrr | Apply Mapping Functions in Parallel using Futures |

fuser | Fused Lasso for High-Dimensional Regression over Groups |

fusionclust | Clustering and Feature Screening using L1 Fusion Penalty |

FusionLearn | Fusion Learning |

futile.any | A Tiny Utility Providing Polymorphic Operations |

futile.logger | A Logging Utility for R |

futile.matrix | Random Matrix Generation and Manipulation |

futile.options | Futile Options Management |

futile.paradigm | A framework for working in a functional programming paradigm in R |

futility | Interim Analysis of Operational Futility in Randomized Trials with Time-to-Event Endpoints and Fixed Follow-Up |

future | Unified Parallel and Distributed Processing in R for Everyone |

future.apply | Apply Function to Elements in Parallel using Futures |

future.BatchJobs | A Future API for Parallel and Distributed Processing using BatchJobs |

future.batchtools | A Future API for Parallel and Distributed Processing using 'batchtools' |

future.callr | A Future API for Parallel Processing using 'callr' |

futureheatwaves | Find, Characterize, and Explore Extreme Events in Climate Projections |

fuzzr | Fuzz-Test R Functions |

Fuzzy.p.value | Computing Fuzzy p-Value |

FuzzyAHP | (Fuzzy) AHP Calculation |

fuzzyFDR | Exact calculation of fuzzy decision rules for multiple testing |

fuzzyforest | Fuzzy Forests |

fuzzyjoin | Join Tables Together on Inexact Matching |

FuzzyLP | Fuzzy Linear Programming |

FuzzyMCDM | Multi-Criteria Decision Making Methods for Fuzzy Data |

FuzzyNumbers | Tools to Deal with Fuzzy Numbers |

FuzzyNumbers.Ext.2 | Apply Two Fuzzy Numbers on a Monotone Function |

FuzzyR | Fuzzy Logic Toolkit for R |

fuzzyRankTests | Fuzzy Rank Tests and Confidence Intervals |

fuzzyreg | Fuzzy Linear Regression |

FuzzyStatProb | Fuzzy Stationary Probabilities from a Sequence of Observations of an Unknown Markov Chain |

FuzzyStatTra | Statistical Methods for Trapezoidal Fuzzy Numbers |

FuzzyToolkitUoN | Type 1 Fuzzy Logic Toolkit |

fuzzywuzzyR | Fuzzy String Matching |

fwdmsa | Forward search for Mokken scale analysis |

FWDselect | Selecting Variables in Regression Models |

fwi.fbp | Fire Weather Index System and Fire Behaviour Prediction System Calculations |

fwsim | Fisher-Wright Population Simulation |

fxregime | Exchange Rate Regime Analysis |

g.data | Delayed-Data Packages |

G1DBN | A package performing Dynamic Bayesian Network inference |

g2f | Find and Fill Gaps in Metabolic Networks |

G2Sd | Grain-Size Statistics and Description of Sediment |

GA | Genetic Algorithms |

GAabbreviate | Abbreviating Items Measures using Genetic Algorithms |

GABi | Framework for Generalized Subspace Pattern Mining |

GAD | GAD: Analysis of variance from general principles |

GADAG | A Genetic Algorithm for Learning Directed Acyclic Graphs |

GaDiFPT | First Passage Time Simulation for Gaussian Diffusion Processes |

GADMTools | Easy Use of 'GADM' Shapefiles |

gafit | Genetic Algorithm for Curve Fitting |

gaiah | Genetic and Isotopic Assignment Accounting for Habitat Suitability |

gains | Lift (Gains) Tables and Charts |

GAIPE | Graphical Extension with Accuracy in Parameter Estimation (GAIPE) |

galts | Genetic Algorithms and C-Steps Based LTS (Least Trimmed Squares) Estimation |

gam | Generalized Additive Models |

gamair | Data for "GAMs: An Introduction with R" |

gambin | Fit the Gambin Model to Species Abundance Distributions |

GAMBoost | Generalized linear and additive models by likelihood based boosting |

gamboostLSS | Boosting Methods for 'GAMLSS' |

gamboostMSM | Estimating multistate models using gamboost() |

gamclass | Functions and Data for a Course on Modern Regression and Classification |

gamCopula | Generalized Additive Models for Bivariate Conditional Dependence Structures and Vine Copulas |

GAMens | Applies GAMbag, GAMrsm and GAMens Ensemble Classifiers for Binary Classification |

games | Statistical Estimation of Game-Theoretic Models |

gamesGA | Genetic Algorithm for Sequential Symmetric Games |

GameTheory | Cooperative Game Theory |

GameTheoryAllocation | Tools for Calculating Allocations in Game Theory |

gamlr | Gamma Lasso Regression |

gamlss | Generalised Additive Models for Location Scale and Shape |

gamlss.add | Extra Additive Terms for GAMLSS Models |

gamlss.cens | Fitting an Interval Response Variable Using ‘gamlss.family’ Distributions |

gamlss.data | GAMLSS Data |

gamlss.demo | Demos for GAMLSS |

gamlss.dist | Distributions for Generalized Additive Models for Location Scale and Shape |

gamlss.mx | Fitting Mixture Distributions with GAMLSS |

gamlss.nl | Fitting non linear parametric GAMLSS models |

gamlss.spatial | Spatial Terms in Generalized Additive Models for Location Scale and Shape Models |

gamlss.tr | Generating and Fitting Truncated ‘gamlss.family’ Distributions |

gamlss.util | GAMLSS Utilities |

gamlssbssn | Bimodal Skew Symmetric Normal Distribution |

gamm4 | Generalized Additive Mixed Models using 'mgcv' and 'lme4' |

gamm4.test | Comparing Nonlinear Curves and Surface Estimations by Semiparametric Methods |

Gammareg | classic gamma regression: joint modeling of mean and shape parameters |

gammSlice | Generalized Additive Mixed Model Analysis via Slice Sampling |

gamreg | Robust and Sparse Regression via Gamma-Divergence |

gamRR | Calculate the RR for the GAM |

gamsel | Fit Regularization Path for Generalized Additive Models |

ganalytics | Interact with 'Google Analytics' |

GANPA | Gene Association Network-based Pathway Analysis |

GANPAdata | The GANPA Datasets Package |

gap | Genetic Analysis Package |

gap.datasets | Datasets for 'gap' |

GAparsimony | Searching Parsimony Models with Genetic Algorithms |

gapfill | Fill Missing Values in Satellite Data |

gapmap | Functions for Drawing Gapped Cluster Heatmap with ggplot2 |

gapminder | Data from Gapminder |

GAR | Authorize and Request Google Analytics Data |

GAS | Generalized Autoregressive Score Models |

gaselect | Genetic Algorithm (GA) for Variable Selection from High-Dimensional Data |

gasfluxes | Greenhouse Gas Flux Calculation from Chamber Measurements |

gastempt | Analyzing Gastric Emptying from MRI or Scintigraphy |

gaston | Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models |

gatepoints | Easily Gate or Select Points on a Scatter Plot |

GauPro | Gaussian Process Fitting |

gaussDiff | Difference measures for multivariate Gaussian probability density functions |

gaussfacts | The Greatest Mathematician Since Antiquity |

gaussquad | Collection of functions for Gaussian quadrature |

gazepath | Parse Eye-Tracking Data into Fixations |

gb | Generalize Lambda Distribution and Generalized Bootstrapping |

GB2 | Generalized Beta Distribution of the Second Kind: Properties, Likelihood, Estimation |

gbfs | Interface with General Bikeshare Feed Specification Files |

GBJ | Generalized Berk-Jones Test for Set-Based Inference in Genetic Association Studies |

gbm | Generalized Boosted Regression Models |

gbm2sas | Convert GBM Object Trees to SAS Code |

gbp | A Bin Packing Problem Solver |

gbRd | Utilities for processing Rd objects and files |

gbs2ploidy | Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data |

gbts | Hyperparameter Search for Gradient Boosted Trees |

gbutils | Simulation of Real and Complex Numbers and Small Programming Utilities |

GCAI.bias | Guided Correction Approach for Inherited bias (GCAI.bias) |

GCalignR | Simple Peak Alignment for Gas-Chromatography Data |

gCat | Graph-based two-sample tests for categorical data |

gcbd | 'GPU'/CPU Benchmarking in Debian-Based Systems |

GCD | Global Charcoal Database |

gcdnet | LASSO and Elastic Net (Adaptive) Penalized Least Squares, Logistic Regression, HHSVM, Squared Hinge SVM and Expectile Regression using a Fast GCD Algorithm |

gcerisk | Generalized Competing Event Model |

gcite | Google Citation Parser |

gcKrig | Analysis of Geostatistical Count Data using Gaussian Copulas |

gclus | Clustering Graphics |

gcmr | Gaussian Copula Marginal Regression |

gconcord | Concord method for Graphical Model Selection |

gcookbook | Data for "R Graphics Cookbook" |

GCPM | Generalized Credit Portfolio Model |

GD | Geographical Detectors |

GDAdata | Datasets for the Book Graphical Data Analysis with R |

gdalUtils | Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities |

gdata | Various R Programming Tools for Data Manipulation |

GDAtools | A Toolbox for the Analysis of Categorical Data in Social Sciences, and Especially Geometric Data Analysis |

gDefrag | Graph-Based Landscape De-Fragmentation |

GDELTtools | Download, slice, and normalize GDELT data |

gdimap | Generalized Diffusion Magnetic Resonance Imaging |

GDINA | The Generalized DINA Model Framework |

gdistance | Distances and Routes on Geographical Grids |

gdm | Generalized Dissimilarity Modeling |

gdmp | Genomic Data Management |

gdns | Tools to Work with Google DNS Over HTTPS API |

gdpc | Generalized Dynamic Principal Components |

gds | Descriptive Statistics of Grouped Data |

gdtools | Utilities for Graphical Rendering |

gear | Geostatistical Analysis in R |

GeDS | Geometrically Designed Spline Regression |

gee | Generalized Estimation Equation Solver |

gee4 | Generalised Estimating Equations (GEE/WGEE) using 'Armadillo' and S4 |

GEEaSPU | Adaptive Association Tests for Multiple Phenotypes using Generalized Estimating Equations (GEE) |

geecure | Marginal Proportional Hazards Mixture Cure Models with Generalized Estimating Equations |

geeM | Solve Generalized Estimating Equations |

GEEmediate | Mediation Analysis for Generalized Linear Models Using the Difference Method |

geepack | Generalized Estimating Equation Package |

geesmv | Modified Variance Estimators for Generalized Estimating Equations |

geex | An API for M-Estimation |

geigen | Calculate Generalized Eigenvalues, the Generalized Schur Decomposition and the Generalized Singular Value Decomposition of a Matrix Pair with Lapack |

geiger | Analysis of Evolutionary Diversification |

GEint | Misspecified Models for Gene-Environment Interaction |

gelnet | Generalized Elastic Nets |

gem | File Conversion for 'Gem Infrasound Logger' |

gemlog | File Conversion for 'Gem Infrasound Logger' |

gems | Generalized Multistate Simulation Model |

gemtc | Network Meta-Analysis Using Bayesian Methods |

genalg | R Based Genetic Algorithm |

GenAlgo | Classes and Methods to Use Genetic Algorithms for Feature Selection |

genasis | Global ENvironmental ASsessment Information System (GENASIS) computational tools |

genBaRcode | Analysis and Visualization Tools for Genetic Barcode Data |

genBart | Generate 'BART' File |

GenBinomApps | Clopper-Pearson Confidence Interval and Generalized Binomial Distribution |

gencve | General Cross Validation Engine |

gendata | Generate and Modify Synthetic Datasets |

gender | Predict Gender from Names Using Historical Data |

genderBR | Predict Gender from Brazilian First Names |

genderizeR | Gender Prediction Based on First Names |

gendist | Generated Probability Distribution Models |

GENEAclassify | Segmentation and Classification of Accelerometer Data |

GENEAread | Package for Reading Binary Files |

GeneClusterNet | Gene Expression Clustering and Gene Network |

GeneCycle | Identification of Periodically Expressed Genes |

GeneF | Package for Generalized F-statistics |

geneListPie | Profiling a gene list into GOslim or KEGG function pie |

genemodel | Gene Model Plotting in R |

GeneNet | Modeling and Inferring Gene Networks |

geneNetBP | Belief Propagation in Genotype-Phenotype Networks |

genepi | Genetic Epidemiology Design and Inference |

genepop | Population Genetic Data Analysis Using Genepop |

generalCorr | Generalized Correlations and Initial Causal Path |

generalhoslem | Goodness of Fit Tests for Logistic Regression Models |

GeneralizedHyperbolic | The Generalized Hyperbolic Distribution |

GeneralizedUmatrix | Credible Visualization for Two-Dimensional Projections of Data |

GeneralOaxaca | Blinder-Oaxaca Decomposition for Generalized Linear Model |

generator | Generate Data Containing Fake Personally Identifiable Information |

GeneReg | Construct time delay gene regulatory network |

geneSignatureFinder | A Gene-signatures finder tools |

genesysr | Genesys PGR Client |

genetics | Population Genetics |

GeneticSubsetter | Identify Favorable Subsets of Germplasm Collections |

GeNetIt | Spatial Graph-Theoretic Genetic Gravity Modelling |

GenForImp | The Forward Imputation: A Sequential Distance-Based Approach for Imputing Missing Data |

genie | A New, Fast, and Outlier Resistant Hierarchical Clustering Algorithm |

geniusr | Tools for Working with the 'Genius' API |

GenKern | Functions for generating and manipulating binned kernel density estimates |

GENLIB | Genealogical Data Analysis |

genlogis | Generalized Logistic Distribution |

genMOSS | Functions for the Bayesian Analysis of GWAS Data |

genMOSSplus | Application of MOSS algorithm to genome-wide association study (GWAS) |

geno2proteo | Finding the DNA and Protein Sequences of Any Genomic or Proteomic Loci |

genogeographer | Methods for Analysing Forensic Ancestry Informative Markers |

genomeplot | 'Plot genome wide values for all chromosomes' |

genomic.autocorr | Models Dealing with Spatial Dependency in Genomic Data |

GenomicMating | Efficient Breeding by Genomic Mating |

genomicper | Circular Genomic Permutation using Gwas p-Values of Association |

GenomicTools | Collection of Tools for Genomic Data Analysis |

genoPlotR | Plot Publication-Grade Gene and Genome Maps |

GenOrd | Simulation of Discrete Random Variables with Given Correlation Matrix and Marginal Distributions |

genotypeR | SNP Genotype Marker Design and Analysis |

genpathmox | Generalized Pathmox Approach Segmentation Tree Analysis |

genridge | Generalized Ridge Trace Plots for Ridge Regression |

GenSA | Generalized Simulated Annealing |

gensemble | generalized ensemble methods |

gensphere | Generalized Spherical Distributions |

genSurv | Generating Multi-State Survival Data |

gensvm | A Generalized Multiclass Support Vector Machine |

GenWin | Spline Based Window Boundaries for Genomic Analyses |

geoaxe | Split 'Geospatial' Objects into Pieces |

geoBayes | Analysis of Geostatistical Data using Bayes and Empirical Bayes Methods |

GeoBoxplot | Geographic Box Plot |

geoCount | Analysis and Modeling for Geostatistical Count Data |

GeoDE | A geometrical Approach to Differential expression and gene-set enrichment |

geodist | Fast, Dependency-Free Geodesic Distance Calculations |

geoelectrics | 3D-Visualization of Geoelectric Resistivity Measurement Profiles |

geofacet | 'ggplot2' Faceting Utilities for Geographical Data |

geofd | Spatial Prediction for Function Value Data |

geoGAM | Select Sparse Geoadditive Models for Spatial Prediction |

GeoGenetix | Quantification of the effect of geographic versus environmental isolation on genetic differentiation |

geogrid | Turn Geospatial Polygons into Regular or Hexagonal Grids |

geohash | Tools for Geohash Creation and Manipulation |

geojson | Classes for 'GeoJSON' |

geojsonio | Convert Data from and to 'GeoJSON' or 'TopoJSON' |

geojsonlint | Tools for Validating 'GeoJSON' |

geojsonR | A GeoJson Processing Toolkit |

geojsonsf | GeoJSON to Simple Feature Converter |

geoknife | Web-Processing of Large Gridded Datasets |

GeoLight | Analysis of Light Based Geolocator Data |

GEOmap | Topographic and Geologic Mapping |

geomapdata | Data for topographic and Geologic Mapping |

GeomComb | (Geometric) Forecast Combination Methods |

geomedb | Fetch 'GeOMe-db' FIMS Data |

geomerge | Geospatial Data Integration |

geometa | Tools for Reading and Writing ISO/OGC Geographic Metadata |

geometry | Mesh Generation and Surface Tesselation |

geomnet | Network Visualization in the 'ggplot2' Framework |

GeoMongo | Geospatial Queries Using 'PyMongo' |

geomorph | Geometric Morphometric Analyses of 2D/3D Landmark Data |

geonames | Interface to www.geonames.org web service |

geonapi | 'GeoNetwork' API R Interface |

geoops | 'GeoJSON' Topology Calculations and Operations |

geoparser | Interface to the Geoparser.io API for Identifying and Disambiguating Places Mentioned in Text |

geophys | Geophysics, Continuum Mechanics, Gravity Modeling |

geoR | Analysis of Geostatistical Data |

GeoRange | Calculating Geographic Range from Occurrence Data |

geoRglm | A Package for Generalised Linear Spatial Models |

georob | Robust Geostatistical Analysis of Spatial Data |

geosapi | GeoServer REST API R Interface |

geoscale | Geological Time Scale Plotting |

geospacom | Facilitate Generating of Distance Matrices Used in Package 'spacom' and Plotting Data on Maps |

geoSpectral | Classes and Methods for Working with Spectral Data with Space-Time Attributes |

geosphere | Spherical Trigonometry |

geospt | Geostatistical Analysis and Design of Optimal Spatial Sampling Networks |

geosptdb | Spatio-Temporal; Inverse Distance Weighting and Radial Basis Functions with Distance-Based Regression |

geostatsp | Geostatistical Modelling with Likelihood and Bayes |

geotech | Geotechnical Engineering |

geotools | Geo tools |

geotoolsR | Tools to Improve the Use of Geostatistic |

geotopbricks | An R Plug-in for the Distributed Hydrological Model GEOtop |

geozoning | Zoning Methods for Spatial Data |

geozoo | Zoo of Geometric Objects |

gepaf | Google Encoded Polyline Algorithm Format |

GERGM | Estimation and Fit Diagnostics for Generalized Exponential Random Graph Models |

GerminaR | Germination Indexes for Seed Germination Variables for Ecophysiological Studies |

germinationmetrics | Seed Germination Indices and Curve Fitting |

gesca | Generalized Structured Component Analysis (GSCA) |

GESE | Gene-Based Segregation Test |

gesis | R Client for GESIS Data Catalogue (DBK) |

gestalt | Tools for Making and Combining Functions |

GESTr | Gene Expression State Transformation |

getCRUCLdata | Use and Explore CRU CL v. 2.0 Climatology Elements in R |

GetDFPData | Reading Annual Financial Reports from Bovespa's DFP, FRE and FCA System |

GetHFData | Download and Aggregate High Frequency Trading Data from Bovespa |

GetITRData | Reading Financial Reports from Bovespa's ITR System |

getlandsat | Get Landsat 8 Data from Amazon Public Data Sets |

GetLattesData | Reading Bibliometric Data from Lattes Platform |

getMet | Get Meteorological Data for Hydrologic Models |

getmstatistic | Quantifying Systematic Heterogeneity in Meta-Analysis |

getopt | C-Like 'getopt' Behavior |

GetoptLong | Parsing Command-Line Arguments and Variable Interpolation |

getPass | Masked User Input |

GetR | GetR: Calculate Guttman error trees in R |

gets | General-to-Specific (GETS) Modelling and Indicator Saturation Methods |

getTBinR | Get WHO Tuberculosis Data |

GetTDData | Get Data for Brazilian Bonds (Tesouro Direto) |

gettz | Get the Timezone Information |

GEVcdn | GEV Conditional Density Estimation Network |

GEVStableGarch | ARMA-GARCH/APARCH Models with GEV and Stable Distributions |

GExMap | A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data |

GFA | Group Factor Analysis |

gfcanalysis | Tools for Working with Hansen et al. Global Forest Change Dataset |

GFD | Tests for General Factorial Designs |

gfer | Green Finance and Environmental Risk |

GFGM.copula | Generalized Farlie-Gumbel-Morgenstern Copula |

gfmR | Implements Group Fused Multinomial Regression |

GFORCE | Clustering and Inference Procedures for High-Dimensional Latent Variable Models |

ggallin | Grab Bag of 'ggplot2' Functions |

ggalluvial | Alluvial Diagrams in 'ggplot2' |

GGally | Extension to 'ggplot2' |

ggalt | Extra Coordinate Systems, 'Geoms', Statistical Transformations, Scales and Fonts for 'ggplot2' |

ggbeeswarm | Categorical Scatter (Violin Point) Plots |

ggbuildr | Save Incremental Builds of Plots |

ggChernoff | Chernoff Faces for 'ggplot2' |

ggconf | Simpler Appearance Modification of 'ggplot2' |

ggcorrplot | Visualization of a Correlation Matrix using 'ggplot2' |

ggdag | Analyze and Create Elegant Directed Acyclic Graphs |

ggdendro | Create Dendrograms and Tree Diagrams Using 'ggplot2' |

ggdistribute | A 'ggplot2' Extension for Plotting Unimodal Distributions |

ggdmc | Dynamic Model of Choice with Parallel Computation, and C++ Capabilities |

gge | Genotype Plus Genotype-by-Environment Biplots |

GGEBiplotGUI | Interactive GGE Biplots in R |

GGEBiplots | GGE Biplots with 'ggplot2' |

ggedit | Interactive 'ggplot2' Layer and Theme Aesthetic Editor |

ggeffects | Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Outputs |

ggenealogy | Visualization Tools for Genealogical Data |

ggetho | Visualisation of High-Throughput Behavioural (i.e. Ethomics) Data |

ggExtra | Add Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements |

ggFacetSample | Show Large Facet Dimensions by Sampling |

ggfan | Summarise a Distribution Through Coloured Intervals |

ggfittext | Fit Text Inside a Box in 'ggplot2' |

ggfocus | Focus on Specific Factor Levels in your ggplot() |

ggforce | Accelerating 'ggplot2' |

ggformula | Formula Interface to the Grammar of Graphics |

ggfortify | Data Visualization Tools for Statistical Analysis Results |

gggenes | Draw Gene Arrow Maps in 'ggplot2' |

ggghost | Capture the Spirit of Your 'ggplot2' Calls |

ggguitar | Utilities for Creating Guitar Tablature |

gghalfnorm | Create a Half Normal Plot Using 'ggplot2' |

gghighlight | Highlight Lines and Points in 'ggplot2' |

ggimage | Use Image in 'ggplot2' |

gginnards | Explore the Innards of 'ggplot2' Objects |

GGIR | Raw Accelerometer Data Analysis |

ggiraph | Make 'ggplot2' Graphics Interactive |

ggiraphExtra | Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph' |

ggjoy | Joyplots in 'ggplot2' |

gglasso | Group Lasso Penalized Learning Using a Unified BMD Algorithm |

gglogo | Geom for Logo Sequence Plots |

ggloop | Create 'ggplot2' Plots in a Loop |

gglorenz | Plotting Lorenz Curve with the Blessing of 'ggplot2' |

ggm | Functions for graphical Markov models |

ggmap | Spatial Visualization with ggplot2 |

ggmcmc | Tools for Analyzing MCMC Simulations from Bayesian Inference |

GGMM | Mixture Gaussian Graphical Models |

ggmosaic | Mosaic Plots in the 'ggplot2' Framework |

GGMridge | Gaussian Graphical Models Using Ridge Penalty Followed by Thresholding and Reestimation |

GGMselect | Gaussian Graphs Models Selection |

ggmuller | Create Muller Plots of Evolutionary Dynamics |

ggnetwork | Geometries to Plot Networks with 'ggplot2' |

ggparallel | Variations of Parallel Coordinate Plots for Categorical Data |

ggplot2 | Create Elegant Data Visualisations Using the Grammar of Graphics |

ggplot2movies | Movies Data |

ggplotAssist | 'RStudio' Addin for Teaching and Learning 'ggplot2' |

ggplotgui | Create Ggplots via a Graphical User Interface |

ggplotify | Convert Plot to 'grob' or 'ggplot' Object |

ggpmisc | Miscellaneous Extensions to 'ggplot2' |

ggpol | Visualizing Social Science Data with 'ggplot2' |

ggpolypath | Polygons with Holes for the Grammar of Graphics |

ggpubr | 'ggplot2' Based Publication Ready Plots |

ggpval | Annotate Statistical Tests for 'ggplot2' |

ggQC | Quality Control Charts for 'ggplot' |

ggQQunif | Compare Big Datasets to the Uniform Distribution |

ggquickeda | Quickly Explore Your Data Using 'ggplot2' and Summary Tables |

ggquiver | Quiver Plots for 'ggplot2' |

ggRandomForests | Visually Exploring Random Forests |

ggraph | An Implementation of Grammar of Graphics for Graphs and Networks |

ggraptR | Allows Interactive Visualization of Data Through a Web Browser GUI |

ggrasp | Gaussian-Based Genome Representative Selector with Prioritization |

ggrepel | Automatically Position Non-Overlapping Text Labels with 'ggplot2' |

ggridges | Ridgeline Plots in 'ggplot2' |

ggROC | package for roc curve plot with ggplot2 |

ggsci | Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2' |

ggseas | 'stats' for Seasonal Adjustment on the Fly with 'ggplot2' |

ggseqlogo | A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos |

ggsignif | Significance Brackets for 'ggplot2' |

ggsn | North Symbols and Scale Bars for Maps Created with 'ggplot2' or 'ggmap' |

ggspatial | Spatial Data Framework for ggplot2 |

ggspectra | Extensions to 'ggplot2' for Radiation Spectra |

ggstance | Horizontal 'ggplot2' Components |

ggstatsplot | 'ggplot2' Based Plots with Statistical Details |

ggswissmaps | Offers Various Swiss Maps as Data Frames and 'ggplot2' Objects |

ggtern | An Extension to 'ggplot2', for the Creation of Ternary Diagrams |

ggThemeAssist | Add-in to Customize 'ggplot2' Themes |

ggthemes | Extra Themes, Scales and Geoms for 'ggplot2' |

GGUM | Generalized Graded Unfolding Model |

ggversa | Graficas Versatiles Con 'ggplot2' |

ggvis | Interactive Grammar of Graphics |

gh | 'GitHub' 'API' |

GHap | Genome-Wide Haplotyping |

ghibli | Studio Ghibli Palette Generator |

GHQp | Gauss Hermite Quadrature with pruning |

ghyp | A Package on Generalized Hyperbolic Distribution and Its Special Cases |

gibble | Geometry Decomposition |

gibbs.met | Naive Gibbs Sampling with Metropolis Steps |

GibbsACOV | Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models |

gifti | Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information |

GIGrvg | Random Variate Generator for the GIG Distribution |

GillespieSSA | Gillespie's Stochastic Simulation Algorithm (SSA) |

gim | Generalized Integration Model |

gimme | Group Iterative Multiple Model Estimation |

gimmeTools | Supplemental Tools for the 'gimme' R Package |

gimms | Download and Process GIMMS NDVI3g Data |

GiNA | High Throughput Phenotyping |

GiniWegNeg | Computing the Gini-Based Coefficients for Weighted and Negative Attributes |

gIPFrm | Generalized Iterative Proportional Fitting for Relational Models |

giphyr | R Interface to the Giphy API |

GiRaF | Gibbs Random Fields Analysis |

giRaph | The giRaph package for graph representation in R |

GISTools | Some further GIS capabilities for R |

gistr | Work with 'GitHub' 'Gists' |

git2r | Provides Access to Git Repositories |

gitgadget | Rstudio Addin for Version Control and Assignment Management using Git |

githubinstall | A Helpful Way to Install R Packages Hosted on GitHub |

gitlabr | Access to the Gitlab API |

gitter | Quantification of Pinned Microbial Cultures |

givitiR | The GiViTI Calibration Test and Belt |

Giza | Constructing panels of population pyramid plots based on lattice |

gjam | Generalized Joint Attribute Modeling |

GJRM | Generalised Joint Regression Modelling |

gk | g-and-k and g-and-h Distribution Functions |

GK2011 | Gaines and Kuklinski (2011) Estimators for Hybrid Experiments |

gkmSVM | Gapped-Kmer Support Vector Machine |

glacierSMBM | Glacier Surface Mass Balance Model |

glamlasso | Penalization in Large Scale Generalized Linear Array Models |

glarma | Generalized Linear Autoregressive Moving Average Models |

glassdoor | Interface to 'Glassdoor' API |

glasso | Graphical Lasso: Estimation of Gaussian Graphical Models |

glba | General Linear Ballistic Accumulator Models |

glcm | Calculate Textures from Grey-Level Co-Occurrence Matrices (GLCMs) |

gld | Estimation and Use of the Generalised (Tukey) Lambda Distribution |

GLDEX | Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods |

GLDreg | Fit GLD Regression Model and GLD Quantile Regression Model to Empirical Data |

gldrm | Generalized Linear Density Ratio Models |

GLIDE | Global and Individual Tests for Direct Effects |

glinternet | Learning Interactions via Hierarchical Group-Lasso Regularization |

gllm | Generalised log-linear model |

gllvm | Generalized Linear Latent Variable Models |

glm.deploy | 'C' and 'Java' Source Code Generator for Fitted Glm Objects |

glm.predict | Predicted Values and Discrete Changes for GLM |

glm2 | Fitting Generalized Linear Models |

GLMaSPU | An Adaptive Test on High Dimensional Parameters in Generalized Linear Models |

glmbb | All Hierarchical or Graphical Models for Generalized Linear Model |

glmBfp | Bayesian Fractional Polynomials for GLMs |

glmc | Fitting Generalized Linear Models Subject to Constraints |

glmdm | R Code for Simulation of GLMDM |

glmertree | Generalized Linear Mixed Model Trees |

glmgraph | Graph-Constrained Regularization for Sparse Generalized Linear Models |

glmlep | Fit GLM with LEP-based penalized maximum likelihood |

glmm | Generalized Linear Mixed Models via Monte Carlo Likelihood Approximation |

GLMMadaptive | Generalized Linear Mixed Models using Adaptive Gaussian Quadrature |

glmmboot | Bootstrap Resampling for Mixed Effects and Plain Models |

glmmBUGS | Generalised Linear Mixed Models with BUGS and JAGS |

glmmEP | Generalized Linear Mixed Model Analysis via Expectation Propagation |

glmmfields | Generalized Linear Mixed Models with Robust Random Fields for Spatiotemporal Modeling |

glmmLasso | Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation |

glmmML | Generalized Linear Models with Clustering |

GLMMRR | Generalized Linear Mixed Model (GLMM) for Binary Randomized Response Data |

glmmsr | Fit a Generalized Linear Mixed Model |

glmmTMB | Generalized Linear Mixed Models using Template Model Builder |

glmnet | Lasso and Elastic-Net Regularized Generalized Linear Models |

glmnetcr | Fit a Penalized Constrained Continuation Ratio Model for Predicting an Ordinal Response |

glmnetUtils | Utilities for 'Glmnet' |

glmpath | L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model |

glmpathcr | Fit a Penalized Continuation Ratio Model for Predicting an Ordinal Response |

GLMsData | Generalized Linear Model Data Sets |

glmtlp | Truncated Lasso Regularized Generalized Linear Models |

glmulti | Model selection and multimodel inference made easy |

glmvsd | Variable Selection Deviation Measures and Instability Tests for High-Dimensional Generalized Linear Models |

glmx | Generalized Linear Models Extended |

globalboosttest | Testing the additional predictive value of high-dimensional data |

GlobalDeviance | Global Deviance Permutation Tests |

GlobalFit | Bi-Level Optimization of Metabolic Network Models |

globalGSA | Global Gene-Set Analysis for Association Studies |

GlobalOptions | Generate Functions to Get or Set Global Options |

globalOptTests | Objective functions for benchmarking the performance of global optimization algorithms |

globals | Identify Global Objects in R Expressions |

globe | Plot 2D and 3D Views of the Earth, Including Major Coastline |

glogis | Fitting and Testing Generalized Logistic Distributions |

glpkAPI | R Interface to C API of GLPK |

glrt | Generalized Logrank Tests for Interval-censored Failure Time Data |

gLRTH | Genome-Wide Association and Linkage Analysis under Heterogeneity |

GLSME | Generalized Least Squares with Measurement Error |

glue | Interpreted String Literals |

gma | Granger Mediation Analysis |

GMAC | Genomic Mediation Analysis with Adaptive Confounding Adjustment |

gmailr | Access the Gmail RESTful API |

gmapsdistance | Distance and Travel Time Between Two Points from Google Maps |

GMCM | Fast Estimation of Gaussian Mixture Copula Models |

gMCP | Graph Based Multiple Comparison Procedures |

gmDatabase | Accessing a Geometallurgical Database with R |

GMDH | Short Term Forecasting via GMDH-Type Neural Network Algorithms |

GMDH2 | Binary Classification via GMDH-Type Neural Network Algorithms |

Gmedian | Geometric Median, k-Median Clustering and Robust Median PCA |

gmediation | Mediation Analysis for Multiple and Multi-Stage Mediators |

gmeta | Meta-Analysis via a Unified Framework of Confidence Distribution |

gmfd | Inference and Clustering of Functional Data |

Gmisc | Descriptive Statistics, Transition Plots, and More |

gmm | Generalized Method of Moments and Generalized Empirical Likelihood |

GMMBoost | Likelihood-based Boosting for Generalized mixed models |

gmnl | Multinomial Logit Models with Random Parameters |

gmodels | Various R Programming Tools for Model Fitting |

gMOIP | '2D plots of linear or integer programming models' |

gmp | Multiple Precision Arithmetic |

GMSE | Generalised Management Strategy Evaluation Simulator |

gmt | Interface Between GMT Map-Making Software and R |

gMWT | Generalized Mann-Whitney Type Tests |

GNE | Computation of Generalized Nash Equilibria |

gnFit | Goodness of Fit Test for Continuous Distribution Functions |

gnlm | Generalized Nonlinear Regression Models |

gnm | Generalized Nonlinear Models |

gnmf | Generalized Non-negative Matrix Factorization Based on Renyi Divergence |

gnorm | Generalized Normal/Exponential Power Distribution |

gnumeric | Read Data from Files Readable by 'gnumeric' |

goalprog | Weighted and lexicographical goal programming and optimization |

goeveg | Functions for Community Data and Ordinations |

gof | Model-diagnostics based on cumulative residuals |

gofastr | Fast DocumentTermMatrix and TermDocumentMatrix Creation |

gofCopula | Goodness-of-Fit Tests for Copulae |

GoFKernel | Testing Goodness-of-Fit with the Kernel Density Estimator |

GofKmt | Khmaladze Martingale Transformation Goodness-of-Fit Test |

gofMC | Goodness of Fit Noise Analysis Using Monte Carlo Techniques |

goft | Tests of Fit for some Probability Distributions |

goftest | Classical Goodness-of-Fit Tests for Univariate Distributions |

goftte | Goodness-of-Fit for Time-to-Event Data |

GOGANPA | GO-Functional-Network-based Gene-Set-Analysis |

gogarch | Generalized Orthogonal GARCH (GO-GARCH) models |

goldi | Gene Ontology Label Discernment and Identification |

gomms | GLM-Based Ordination Method |

GoodmanKruskal | Association Analysis for Categorical Variables |

goodpractice | Advice on R Package Building |

googleAnalyticsR | Google Analytics API into R |

googleAuthR | Authenticate and Create Google APIs |

googleCloudStorageR | Interface with Google Cloud Storage API |

googleComputeEngineR | R Interface with Google Compute Engine |

googledrive | An Interface to Google Drive |

googleformr | Collect Data Programmatically by POST Methods to Google Forms |

GoogleKnowledgeGraphR | Retrieve Information from 'Google Knowledge Graph' API |

googleLanguageR | Call Google's 'Natural Language' API, 'Cloud Translation' API, 'Cloud Speech' API and 'Cloud Text-to-Speech' API |

googlenlp | An Interface to Google's Cloud Natural Language API |

googlePolylines | Encoding Coordinates into 'Google' Polylines |

googlePrintr | Connect to 'Google Cloud Print' API |

googlePublicData | Working with Google's 'Public Data Explorer' DSPL Metadata Files |

googlesheets | Manage Google Spreadsheets from R |

googleVis | R Interface to Google Charts |

googleway | Accesses Google Maps APIs to Retrieve Data and Plot Maps |

GOplot | Visualization of Functional Analysis Data |

GORCure | Fit Generalized Odds Rate Mixture Cure Model with Interval Censored Data |

goric | Generalized Order-Restricted Information Criterion |

govStatJPN | functions to get public survey data in Japan |

gower | Gower's Distance |

gpairs | gpairs: The Generalized Pairs Plot |

GPareto | Gaussian Processes for Pareto Front Estimation and Optimization |

GPArotation | GPA Factor Rotation |

GPB | Generalized Poisson Binomial Distribution |

gPCA | Batch Effect Detection via Guided Principal Components Analysis |

gpclib | General Polygon Clipping Library for R |

GPCMlasso | Differential Item Functioning in Generalized Partial Credit Models |

GPCSIV | GPCSIV, Generalized Principal Component of Symbolic Interval variables |

gpDDE | General Profiling Method for Delay Differential Equation |

gPdtest | Bootstrap goodness-of-fit test for the generalized Pareto distribution |

GPFDA | Apply Gaussian Process in Functional data analysis |

GPfit | Gaussian Processes Modeling |

gpg | GNU Privacy Guard for R |

GPGame | Solving Complex Game Problems using Gaussian Processes |

GpGp | Fast Gaussian Process Computation Using Vecchia's Approximation |

gpk | 100 Data Sets for Statistics Education |

gplm | Generalized Partial Linear Models (GPLM) |

gplots | Various R Programming Tools for Plotting Data |

GPLTR | Generalized Partially Linear Tree-Based Regression Model |

GPM | Gaussian Process Modeling of Multi-Response Datasets |

gpmap | Analysing and plotting genotype-phenotype maps |

GPoM | Generalized Polynomial Modelling |

GPPFourier | Calculate Gross Primary Production (GPP) from O2 Time Series |

gppm | Gaussian Process Panel Modeling |

gpr | A Minimalistic package to apply Gaussian Process in R |

GPrank | Gaussian Process Ranking of Multiple Time Series |

gProfileR | Interface to the 'g:Profiler' Toolkit |

gptk | Gaussian Processes Tool-Kit |

gpuR | GPU Functions for R Objects |

GPvam | Maximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling |

gqlr | 'GraphQL' Server in R |

gquad | Prediction of G Quadruplexes and Other Non-B DNA Motifs |

Grace | Graph-Constrained Estimation and Hypothesis Tests |

gradDescent | Gradient Descent for Regression Tasks |

grade | Binary Grading functions for R |

gradientPickerD3 | Interactive Color Gradient Picker Using 'htmlwidgets' and the Modified JS Script 'jquery-gradient-picker' |

gRain | Graphical Independence Networks |

gramEvol | Grammatical Evolution for R |

GrammR | Graphical Representation and Modeling of Metagenomic Reads |

GRANBase | Creating Continuously Integrated Package Repositories from Manifests |

GRANCore | Classes and Methods for 'GRANBase' |

granova | Graphical Analysis of Variance |

granovaGG | Graphical Analysis of Variance Using ggplot2 |

GRAPE | Gene-Ranking Analysis of Pathway Expression |

grapes | Make Binary Operators |

gRapfa | Acyclic Probabilistic Finite Automata |

GrapheR | A Multi-Platform GUI for Drawing Customizable Graphs in R |

grapherator | A Modular Multi-Step Graph Generator |

GraphFactor | Network Topology of Intravariable Clusters with Intervariable Links |

graphframes | Interface for 'GraphFrames' |

graphicalVAR | Graphical VAR for Experience Sampling Data |

graphicsQC | Quality Control for Graphics in R |

graphkernels | Graph Kernels |

graphon | A Collection of Graphon Estimation Methods |

GraphPCA | Graphical Tools of Histogram PCA |

graphql | A GraphQL Query Parser |

graphscan | Cluster Detection with Hypothesis Free Scan Statistic |

graphTweets | Visualise Twitter Interactions |

GrassmannOptim | Grassmann Manifold Optimization |

graticule | Meridional and Parallel Lines for Maps |

grattan | Australian Tax Policy Analysis |

gravity | Estimation Methods for Gravity Models |

gRbase | A Package for Graphical Modelling in R |

GRCdata | Parameter Inference and Optimal Designs for Grouped and/or Right-Censored Count Data |

grec | GRadient-Based RECognition of Spatial Patterns in Environmental Data |

GreedyEPL | Greedy Expected Posterior Loss |

GreedyExperimentalDesign | Greedy Experimental Design Construction |

GreedyExperimentalDesignJARs | GreedyExperimentalDesign JARs |

GreedySBTM | Greedy Stochastic Block Transition Models |

Greg | Regression Helper Functions |

GREP2 | GEO RNA-Seq Experiments Processing Pipeline |

greport | Graphical Reporting for Clinical Trials |

greta | Simple and Scalable Statistical Modelling in R |

grex | Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data |

greybox | Toolbox for Model Building and Forecasting |

greyzoneSurv | Fit a Grey-Zone Model with Survival Data |

grf | Generalized Random Forests (Beta) |

Grid2Polygons | Convert Spatial Grids to Polygons |

gridBase | Integration of base and grid graphics |

gridDebug | Debugging 'grid' Graphics |

gridExtra | Miscellaneous Functions for "Grid" Graphics |

gridGraphics | Redraw Base Graphics Using 'grid' Graphics |

gridGraphviz | Drawing Graphs with 'grid' |

gridsample | Tools for Grid-Based Survey Sampling Design |

gridsampler | A Simulation Tool to Determine the Required Sample Size for Repertory Grid Studies |

gridSVG | Export 'grid' Graphics as SVG |

GriegSmith | Uses Grieg-Smith method on 2 dimentional spatial data |

gRim | Graphical Interaction Models |

grImport | Importing Vector Graphics |

grImport2 | Importing 'SVG' Graphics |

GrimR | Calculate Optical Parameters from Spindle Stage Measurements |

grnn | General regression neural network |

GROAN | Genomic Regression Workbench |

groc | Generalized Regression on Orthogonal Components |

gromovlab | Gromov-Hausdorff Type Distances for Labeled Metric Spaces |

groupdata2 | Creating Groups from Data |

grouped | Regression Analysis of Grouped and Coarse Data |

groupedstats | Grouped Statistical Analyses in a Tidy Way |

groupedSurv | Efficient Estimation of Grouped Survival Models Using the Exact Likelihood Function |

groupICA | Independent Component Analysis for Grouped Data |

groupRemMap | Regularized Multivariate Regression for Identifying Master Predictors Using the GroupRemMap Penalty |

GroupSeq | A GUI-Based Program to Compute Probabilities Regarding Group Sequential Designs |

groupsubsetselection | Group Subset Selection |

GroupTest | Multiple Testing Procedure for Grouped Hypotheses |

grove | Wavelet Functional ANOVA Through Markov Groves |

growcurves | Bayesian Semi and Nonparametric Growth Curve Models that Additionally Include Multiple Membership Random Effects |

growfunctions | Bayesian Non-Parametric Dependent Models for Time-Indexed Functional Data |

growth | Multivariate Normal and Elliptically-Contoured Repeated Measurements Models |

growthcurver | Simple Metrics to Summarize Growth Curves |

growthmodels | Nonlinear Growth Models |

growthrate | Bayesian reconstruction of growth velocity |

growthrates | Estimate Growth Rates from Experimental Data |

grplasso | Fitting user specified models with Group Lasso penalty |

grpreg | Regularization Paths for Regression Models with Grouped Covariates |

grpregOverlap | Penalized Regression Models with Overlapping Grouped Covariates |

grpSLOPE | Group Sorted L1 Penalized Estimation |

grpss | Group Screening and Selection |

GrpString | Patterns and Statistical Differences Between Two Groups of Strings |

grr | Alternative Implementations of Base R Functions |

GRS.test | GRS Test for Portfolio Efficiency, Its Statistical Power Analysis, and Optimal Significance Level Calculation |

grt | General Recognition Theory |

GRTo | Tools for the Analysis of Gutenberg-Richter Distributions of Earthquake Magnitudes |

GSA | Gene set analysis |

GSAfisherCombined | Gene Set Analysis with Fisher Combined Method |

GSAgm | Gene Set Analysis using the Gamma Method |

gsalib | Utility Functions For GATK |

GSAQ | Gene Set Analysis with QTL |

gsarima | Two functions for Generalized SARIMA time series simulation |

gsbDesign | Group Sequential Bayes Design |

GSCAD | Implementing GSCAD Method for Image Denoising and Inpainting |

gscounts | Group Sequential Designs with Negative Binomial Outcomes |

gsDesign | Group Sequential Design |

GSE | Robust Estimation in the Presence of Cellwise and Casewise Contamination and Missing Data |

gsEasy | Gene Set Enrichment Analysis in R |

GSED | Group Sequential Enrichment Design |

gSeg | Graph-Based Change-Point Detection (g-Segmentation) |

gSEM | Semi-Supervised Generalized Structural Equation Modeling |

gset | Group Sequential Design in Equivalence Studies |

gsg | Calculation of selection coefficients |

gsheet | Download Google Sheets Using Just the URL |

GSIF | Global Soil Information Facilities |

gskat | GEE_KM |

gsl | Wrapper for the Gnu Scientific Library |

gsloid | Global Sea Level and Oxygen Isotope Data |

GSM | Gamma Shape Mixture |

gsmoothr | Smoothing tools |

GSMX | Multivariate Genomic Selection |

GSODR | Global Surface Summary of the Day (GSOD) Weather Data from R |

GSparO | Group Sparse Optimization |

gsrsb | Group Sequential Refined Secondary Boundary |

gss | General Smoothing Splines |

gsscopu | Copula Density and 2-D Hazard Estimation using Smoothing Splines |

GSSE | Genotype-Specific Survival Estimation |

gstat | Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation |

gsubfn | Utilities for Strings and Function Arguments |

gsw | Gibbs Sea Water Functions |

GsymPoint | Estimation of the Generalized Symmetry Point, an Optimal Cutpoint in Continuous Diagnostic Tests |

gsynth | Generalized Synthetic Control Method |

gt4ireval | Generalizability Theory for Information Retrieval Evaluation |

gtable | Arrange 'Grobs' in Tables |

gtcorr | Calculate efficiencies of group testing algorithms with correlated responses |

gte | Generalized Turnbull's Estimator |

gTests | Graph-Based Two-Sample Tests |

gtheory | Apply Generalizability Theory with R |

gtools | Various R Programming Tools |

gtop | Game-Theoretically OPtimal (GTOP) Reconciliation Method |

gtrendsR | Perform and Display Google Trends Queries |

gtsf | General Transit Simple Features |

gtWAS | Genome and Transcriptome Wide Association Study |

gtx | Genetics ToolboX |

GuardianR | The Guardian API Wrapper |

Guerry | Maps, data and methods related to Guerry (1833) "Moral Statistics of France" |

guess | Adjust Estimates of Learning for Guessing |

GUIDE | GUI for DErivatives in R |

GUIgems | Graphical User Interface for Generalized Multistate Simulation Model |

GUILDS | Implementation of Sampling Formulas for the Unified Neutral Model of Biodiversity and Biogeography, with or without Guild Structure |

GUIProfiler | Graphical User Interface for Rprof() |

gumbel | The Gumbel-Hougaard Copula |

GUniFrac | Generalized UniFrac Distances |

gunsales | Statistical Analysis of Monthly Background Checks of Gun Purchases |

gustave | A User-Oriented Statistical Toolkit for Analytical Variance Estimation |

gutenbergr | Download and Process Public Domain Works from Project Gutenberg |

GUTS | Fast Calculation of the Likelihood of a Stochastic Survival Model |

gvc | Global Value Chains Tools |

gvcm.cat | Regularized Categorical Effects/Categorical Effect Modifiers/Continuous/Smooth Effects in GLMs |

gvcR | Genotypic Variance Components |

gvlma | Global Validation of Linear Models Assumptions |

GWAF | Genome-Wide Association/Interaction Analysis and Rare Variant Analysis with Family Data |

GWASExactHW | Exact Hardy-Weinburg testing for Genome Wide Association Studies |

GWASinlps | Nonlocal Prior Based Iterative SNP Selection Tool for Genome-Wide Association Studies |

gwdegree | A Shiny App to Aid Interpretation of Geometrically-Weighted Degree Estimates in Exponential Random Graph Models |

gwerAM | Controlling the genome-wide type I error rate in association mapping experiments |

gwfa | Geographically Weighted Fractal Analysis |

GWG | Calculation of probabilities for inadequate and excessive gestational weight gain |

gWidgets | gWidgets API for building toolkit-independent, interactive GUIs |

gWidgets2 | Rewrite of gWidgets API for Simplified GUI Construction |

gWidgets2RGtk2 | Implementation of gWidgets2 for the RGtk2 Package |

gWidgets2tcltk | Toolkit Implementation of gWidgets2 for tcltk |

gWidgetsRGtk2 | Toolkit Implementation of gWidgets for RGtk2 |

gWidgetstcltk | Toolkit implementation of gWidgets for tcltk package |

GWLelast | Geographically Weighted Logistic Elastic Net Regression |

GWmodel | Geographically-Weighted Models |

gWQS | Generalized Weighted Quantile Sum Regression |

GWRM | Generalized Waring Regression Model for Count Data |

gwrpvr | Genome-Wide Regression P-Value (Gwrpv) |

gwrr | Fits geographically weighted regression models with diagnostic tools |

GWSDAT | GroundWater Spatiotemporal Data Analysis Tool (GWSDAT) |

GWsignif | Estimating Genome-Wide Significance for Whole Genome Sequencing Studies, Either Single SNP Tests or Region-Based Tests |

GxM | Maximum Likelihood Estimation for Gene-by-Measured Environment Interaction Models |

gym | Provides Access to the OpenAI Gym API |

gyriq | Kinship-Adjusted Survival SNP-Set Analysis |

h2o | R Interface for 'H2O' |

h2o4gpu | Interface to 'H2O4GPU' |

h5 | Interface to the 'HDF5' Library |

haarfisz | Software to perform Haar Fisz transforms |

HAC | Estimation, Simulation and Visualization of Hierarchical Archimedean Copulae (HAC) |

HadoopStreaming | Utilities for using R scripts in Hadoop streaming |

hail | Read HYDRA Rainfall Data |

hamlet | Hierarchical Optimal Matching and Machine Learning Toolbox |

HandTill2001 | Multiple Class Area under ROC Curve |

Hankel | Univariate non-parametric two-sample test based on empirical Hankel transforms |

hansard | Provides Easy Downloading Capabilities for the UK Parliament API |

HAP.ROR | Recursive Organizer (ROR) |

hapassoc | Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm |

HapEstXXR | Multi-Locus Stepwise Regression |

HAPim | HapIM |

Haplin | Analyzing Case-Parent Triad and/or Case-Control Data with SNP Haplotypes |

haplo.stats | Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous |

haploR | Query 'HaploReg', 'RegulomeDB', 'LDlink' |

haploReconstruct | Reconstruction of Haplotype-Blocks from Time Series Data |

HaploSim | Functions to simulate haplotypes |

haplotyper | Tool for Clustering Genotypes in Haplotypes |

haplotypes | Haplotype Inference and Statistical Analysis of Genetic Variation |

happybiRthday | Calculate Upcoming Birthday Dates of Github Repos |

hapsim | Haplotype Data Simulation |

HardyWeinberg | Statistical Tests and Graphics for Hardy-Weinberg Equilibrium |

harmonicmeanp | Harmonic Mean p-Values and Model Averaging by Mean Maximum Likelihood |

HarmonicRegression | Harmonic Regression to One or more Time Series |

harrietr | Wrangle Phylogenetic Distance Matrices and Other Utilities |

HARtools | Read HTTP Archive ('HAR') Data |

Harvest.Tree | Harvest the Classification Tree |

harvestr | A Parallel Simulation Framework |

hash | Full feature implementation of hash/associated arrays/dictionaries |

hashFunction | A collection of non-cryptographic hash functions |

hashids | Generate Short Unique YouTube-Like IDs (Hashes) from Integers |

hashmap | The Faster Hash Map |

hashr | Hash R Objects to Integers Fast |

hasseDiagram | Drawing Hasse Diagram |

haven | Import and Export 'SPSS', 'Stata' and 'SAS' Files |

hawkes | Hawkes process simulation and calibration toolkit |

hazer | Identifying Foggy and Cloudy Images by Quantifying Hazeness |

hazus | Damage functions from FEMA's HAZUS software for use in modeling financial losses from natural disasters |

hBayesDM | Hierarchical Bayesian Modeling of Decision-Making Tasks |

hbdct | Hierarchical Bayesian Design for Clinical Trials |

HBglm | Hierarchical Bayesian Regression for GLMs |

hbim | Hill/Bliss Independence Model for Combination Vaccines |

hbm | Hierarchical Block Matrix Analysis |

hbmem | Hierarchical Bayesian Analysis of Recognition Memory |

HBP | Hi-C BED File Analysis Pipeline |

hbsae | Hierarchical Bayesian Small Area Estimation |

HBSTM | Hierarchical Bayesian Space-Time models for Gaussian space-time data |

hcc | Hidden correlation check |

hcci | Interval estimation for the parameters of linear models with heteroskedasticity (Wild Bootstrap) |

HCmodelSets | Regression with a Large Number of Potential Explanatory Variables |

hcp | Change Point Estimation for Regression with Heteroscedastic Data |

hda | Heteroscedastic Discriminant Analysis |

hdbinseg | Change-Point Analysis of High-Dimensional Time Series via Binary Segmentation |

HDCI | High Dimensional Confidence Interval Based on Lasso and Bootstrap |

HDclassif | High Dimensional Supervised Classification and Clustering |

HDDesign | Sample Size Calculation for High Dimensional Classification Study |

hddplot | Use Known Groups in High-Dimensional Data to Derive Scores for Plots |

hdf5r | Interface to the 'HDF5' Binary Data Format |

HDGLM | Tests for High Dimensional Generalized Linear Models |

hdi | High-Dimensional Inference |

HDInterval | Highest (Posterior) Density Intervals |

hdlm | Fitting High Dimensional Linear Models |

hdm | High-Dimensional Metrics |

HDMD | Statistical Analysis Tools for High Dimension Molecular Data (HDMD) |

hdme | High-Dimensional Regression with Measurement Error |

hdnom | Benchmarking and Visualization Toolkit for Penalized Cox Models |

HDoutliers | Leland Wilkinson's Algorithm for Detecting Multidimensional Outliers |

hdpca | Principal Component Analysis in High-Dimensional Data |

HDPenReg | High-Dimensional Penalized Regression |

hdrcde | Highest Density Regions and Conditional Density Estimation |

hds | Hazard Discrimination Summary |

HDtest | High Dimensional Hypothesis Testing for Mean Vectors, Covariance Matrices, and White Noise of Vector Time Series |

HDtweedie | The Lasso for the Tweedie's Compound Poisson Model Using an IRLS-BMD Algorithm |

healthcareai | Tools for Healthcare Machine Learning |

heatex | Heat exchange calculations during physical activity |

heatmap.plus | Heatmap with more sensible behavior |

heatmap3 | An Improved Heatmap Package |

heatmapFit | Fit Statistic for Binary Dependent Variable Models |

heatmaply | Interactive Cluster Heat Maps Using 'plotly' |

heatwaveR | Detect Heatwaves and Cold-Spells |

heavy | Robust Estimation Using Heavy-Tailed Distributions |

heemod | Markov Models for Health Economic Evaluations |

hei | Calculate Healthy Eating Index (HEI) Scores |

heims | Decode and Validate HEIMS Data from Department of Education, Australia |

helixvis | Visualize Alpha-Helical Peptide Sequences |

hellno | Providing 'stringsAsFactors=FALSE' Variants of 'data.frame()' and 'as.data.frame()' |

helloJavaWorld | Hello Java World |

HelpersMG | Tools for Earth Meteorological Analysis |

helsinki | R Tools for Helsinki Open Data |

HEMDAG | Hierarchical Ensemble Methods for Directed Acyclic Graphs |

heplots | Visualizing Hypothesis Tests in Multivariate Linear Models |

here | A Simpler Way to Find Your Files |

hergm | Hierarchical Exponential-Family Random Graph Models |

heritability | Marker-Based Estimation of Heritability Using Individual Plant or Plot Data |

HeritSeq | Heritability of Gene Expression for Next-Generation Sequencing |

hermite | Generalized Hermite Distribution |

hesim | Health-Economic Simulation Modeling and Decision Analysis |

het.test | White's Test for Heteroskedasticity |

hetGP | Heteroskedastic Gaussian Process Modeling and Design under Replication |

hetmeta | Heterogeneity Measures in Meta-Analysis |

hett | Heteroscedastic t-Regression |

heuristica | Heuristics Including Take the Best and Unit-Weight Linear |

hexbin | Hexagonal Binning Routines |

hexSticker | Create Hexagon Sticker in R |

hextri | Hexbin Plots with Triangles |

hexView | Viewing Binary Files |

hflights | Flights that departed Houston in 2011 |

hgam | High-dimensional Additive Modelling |

hglasso | Learning graphical models with hubs |

hglm.data | Data for The hglm Package |

hgm | Holonomic Gradient Method and Gradient Descent |

HGNChelper | Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols |

HH | Statistical Analysis and Data Display: Heiberger and Holland |

HHG | Heller-Heller-Gorfine Tests of Independence and Equality of Distributions |

hhh4contacts | Age-Structured Spatio-Temporal Models for Infectious Disease Counts |

hhi | Calculate and Visualize the Herfindahl-Hirschman Index |

hht | The Hilbert-Huang Transform: Tools and Methods |

HI | Simulation from distributions supported by nested hyperplanes |

HIBPwned | Bindings for the 'HaveIBeenPwned.com' Data Breach API |

HiCblock | Systematic Analysis of Architectural Proteins and Functional Elements in Blocking Long-Range Contacts Between Loci |

HiCfeat | Multiple Logistic Regression for 3D Chromatin Domain Border Analysis |

HiCglmi | Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms |

HiClimR | Hierarchical Climate Regionalization |

HiCseg | Detection of domains in HiC data |

hiddenf | The All-Configurations, Maximum-Interaction F-Test for Hidden Additivity |

HiddenMarkov | Hidden Markov Models |

HiDimDA | High Dimensional Discriminant Analysis |

hier.part | Hierarchical Partitioning |

hierarchicalDS | Functions For Performing Hierarchical Analysis of Distance Sampling Data |

hierarchicalSets | Set Data Visualization Using Hierarchies |

hierband | Convex Banding of the Covariance Matrix |

hierDiversity | Hierarchical Multiplicative Partitioning of Complex Phenotypes |

hierfstat | Estimation and Tests of Hierarchical F-Statistics |

hierNet | A Lasso for Hierarchical Interactions |

HierO | A graphical user interface for calculating power and sample size for hierarchical data |

hiertest | Convex Hierarchical Testing of Interactions |

HIest | Hybrid index estimation |

highcharter | A Wrapper for the 'Highcharts' Library |

highD2pop | Two-Sample Tests for Equality of Means in High Dimension |

HighDimOut | Outlier Detection Algorithms for High-Dimensional Data |

highfrequency | Tools for Highfrequency Data Analysis |

highlight | Syntax Highlighter |

highlightHTML | Highlight HTML Text and Tables |

highmean | Two-Sample Tests for High-Dimensional Mean Vectors |

highr | Syntax Highlighting for R Source Code |

highriskzone | Determining and Evaluating High-Risk Zones |

highSCREEN | High-Throughput Screening for Plate Based Essays |

highTtest | Simultaneous Critical Values for t-Tests in Very High Dimensions |

higrad | Statistical Inference for Online Learning and Stochastic Approximation via HiGrad |

hillmakeR | Perform occupancy analysis |

HiLMM | Estimation of Heritability in Linear Mixed Models |

HIMA | High-Dimensional Mediation Analysis |

hindexcalculator | H-Index Calculator using Data from a Web of Science (WoS) Citation Report |

hint | Tools for hypothesis testing based on Hypergeometric Intersection distributions |

hiPOD | hierarchical Pooled Optimal Design |

HiResTEC | Non-Targeted Fluxomics on High-Resolution Mass-Spectrometry Data |

hIRT | Hierarchical Item Response Theory Models |

hisse | Hidden State Speciation and Extinction |

HistData | Data Sets from the History of Statistics and Data Visualization |

HistDAWass | Histogram-Valued Data Analysis |

histmdl | A Most Informative Histogram-Like Model |

histogram | Construction of Regular and Irregular Histograms with Different Options for Automatic Choice of Bins |

HistogramTools | Utility Functions for R Histograms |

historydata | Data Sets for Historians |

histry | Enhanced Command History Tracking for R Sessions and Dynamic Documents |

hit | Hierarchical Inference Testing |

hitandrun | "Hit and Run" and "Shake and Bake" for Sampling Uniformly from Convex Shapes |

HIV.LifeTables | HIV calibrated model life tables for countries with generalized HIV epidemics |

hive | Hadoop InteractiVE |

HiveR | 2D and 3D Hive Plots for R |

HK80 | Conversion Tools for HK80 Geographical Coordinate System |

hkclustering | Ensemble Clustering using K Means and Hierarchical Clustering |

hkevp | Spatial Extreme Value Analysis with the Hierarchical Model of Reich and Shaby (2012) |

hkex.api | API to Retrieve Data from Hong Kong Stock Exchange |

HKprocess | Hurst-Kolmogorov Process |

HLMdiag | Diagnostic Tools for Hierarchical (Multilevel) Linear Models |

HLSM | Hierarchical Latent Space Network Model |

HMDHFDplus | Read HMD and HFD Data from the Web |

hmeasure | The H-measure and other scalar classification performance metrics |

hmi | Hierarchical Multiple Imputation |

Hmisc | Harrell Miscellaneous |

HMM | HMM - Hidden Markov Models |

hmm.discnp | Hidden Markov Models with Discrete Non-Parametric Observation Distributions |

HMMCont | Hidden Markov Model for Continuous Observations Processes |

HMMEsolver | A Fast Solver for Henderson Mixed Model Equation via Row Operations |

hmmm | Hierarchical Multinomial Marginal Models |

HMMoce | Improved Analysis of Marine Animal Movement Data Using Hidden Markov Models |

HMP | Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP |

HMPTrees | Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data |

HMR | Flux Estimation with Static Chamber Data |

hms | Pretty Time of Day |

HMVD | Group Association Test using a Hidden Markov Model |

hNMF | Hierarchical Non-Negative Matrix Factorization |

hnp | Half-Normal Plots with Simulation Envelopes |

hoa | Higher Order Likelihood Inference |

hoardeR | Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices |

hoardr | Manage Cached Files |

hogsvdR | Higher-Order Generalized Singular Value Decomposition |

holdem | Texas Holdem Simulator |

Holidays | Holiday and Half-Day Data, for Use with the 'TimeWarp' Package |

homals | Gifi Methods for Optimal Scaling |

homeR | Useful Functions for Building Physics |

Homeric | Doughnut Plots |

hommel | Methods for Closed Testing with Simes Inequality, in Particular Hommel's Method |

homologene | Quick Access to Homology Information |

homomorpheR | Homomorphic Computations in R |

HomoPolymer | Theoretical Model to Simulate Radical Polymerization |

homtest | Homogeneity tests for Regional Frequency Analysis |

hopbyhop | Transmissions and Receptions in a Hop by Hop Network |

horizon | Horizon Search Algorithm |

HoRM | Supplemental Functions and Datasets for "Handbook of Regression Methods" |

hornpa | Horn's (1965) Test to Determine the Number of Components/Factors |

horserule | Flexible Non-Linear Regression with the HorseRule Algorithm |

horseshoe | Implementation of the Horseshoe Prior |

hot.deck | Multiple Hot-Deck Imputation |

HotDeckImputation | Hot Deck Imputation Methods for Missing Data |

Hotelling | Hotelling's T^2 Test and Variants |

hotspot | Software Hotspot Analysis |

hotspots | Hot Spots |

housingData | U.S. Housing Data from 2008 to 2016 |

howmany | A lower bound for the number of correct rejections |

HPbayes | Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling |

hpcwld | High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion |

hpoPlot | Functions for Plotting HPO Terms |

hqmisc | Miscellaneous convenience functions and dataset |

hqreg | Regularization Paths for Lasso or Elastic-Net Penalized Huber Loss Regression and Quantile Regression |

hR | An HR Analytics Toolkit |

hrbrthemes | Additional Themes, Theme Components and Utilities for 'ggplot2' |

HRM | High-Dimensional Repeated Measures |

HRQoL | Health Related Quality of Life Analysis |

HSAR | Hierarchical Spatial Autoregressive Model |

HSAUR | A Handbook of Statistical Analyses Using R (1st Edition) |

HSAUR2 | A Handbook of Statistical Analyses Using R (2nd Edition) |

HSAUR3 | A Handbook of Statistical Analyses Using R (3rd Edition) |

hsdar | Manage, Analyse and Simulate Hyperspectral Data |

hSDM | hierarchical Bayesian species distribution models |

hsicCCA | Canonical Correlation Analysis based on Kernel Independence Measures |

hsm | A Path-Based BCD for Proximal Function of Latent Group Lasso |

hsmm | Hidden Semi Markov Models |

hsphase | Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data |

HSSVD | Biclustering with Heterogeneous Variance |

htdp | Horizontal Time Dependent Positioning |

htm2txt | Convert Html into Text |

htmltab | Assemble Data Frames from HTML Tables |

htmlTable | Advanced Tables for Markdown/HTML |

htmltidy | Tidy Up and Test XPath Queries on HTML and XML Content |

htmltools | Tools for HTML |

HTMLUtils | Facilitates Automated HTML Report Creation |

htmlwidgets | HTML Widgets for R |

htree | Historical Tree Ensembles for Longitudinal Data |

hts | Hierarchical and Grouped Time Series |

HTSCluster | Clustering High-Throughput Transcriptome Sequencing (HTS) Data |

HTSSIP | High Throughput Sequencing of Stable Isotope Probing Data Analysis |

httk | High-Throughput Toxicokinetics |

httpcache | Query Cache for HTTP Clients |

httpcode | 'HTTP' Status Code Helper |

httping | 'Ping' 'URLs' to Time 'Requests' |

httpRequest | Basic HTTP Request |

httptest | A Test Environment for HTTP Requests |

httpuv | HTTP and WebSocket Server Library |

httr | Tools for Working with URLs and HTTP |

hues | Distinct Colours Palettes Based on 'iwanthue' |

huge | High-Dimensional Undirected Graph Estimation |

HUM | compute HUM value and visualize ROC curves |

humanFormat | Human-friendly formatting functions |

humaniformat | A Parser for Human Names |

humanize | Create Values for Human Consumption |

humanleague | Synthetic Population Generator |

humidity | Calculate Water Vapor Measures from Temperature and Dew Point |

hunspell | High-Performance Stemmer, Tokenizer, and Spell Checker |

HURDAT | Hurricane Re-Analysis Project |

hurdlr | Zero-Inflated and Hurdle Modelling Using Bayesian Inference |

hurricaneexposure | Explore and Map County-Level Hurricane Exposure in the United States |

hutils | Miscellaneous R Functions and Aliases |

huxtable | Easily Create and Style Tables for LaTeX, HTML and Other Formats |

HW.pval | Testing Hardy-Weinberg Equilibrium for Multiallelic Genes |

hwde | Models and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci |

HWEBayes | Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing |

HWEintrinsic | Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem |

hwriter | HTML Writer - Outputs R objects in HTML format |

hwwntest | Tests of White Noise using Wavelets |

HWxtest | Exact Tests for Hardy-Weinberg Proportions |

hybridEnsemble | Build, Deploy and Evaluate Hybrid Ensembles |

HybridFS | A Hybrid Filter-Wrapper Feature Selection Method |

hybridHclust | Hybrid Hierarchical Clustering |

HybridMC | Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques |

hybridModels | Stochastic Hybrid Models in Dynamic Networks |

HydeNet | Hybrid Bayesian Networks Using R and JAGS |

hydroApps | Tools and models for hydrological applications |

hydrogeo | Groundwater Data Presentation and Interpretation |

hydroGOF | Goodness-of-Fit Functions for Comparison of Simulated and Observed Hydrological Time Series |

hydrolinks | Hydrologic Network Linking Data and Tools |

HydroMe | R codes for estimating water retention and infiltration model parameters using experimental data |

hydroPSO | Particle Swarm Optimisation, with Focus on Environmental Models |

hydroscoper | Interface to the Greek National Data Bank for Hydrometeorological Information |

hydrostats | Hydrologic Indices for Daily Time Series Data |

hydroTSM | Time Series Management, Analysis and Interpolation for Hydrological Modelling |

hyfo | Hydrology and Climate Forecasting |

hyper.fit | Generic N-Dimensional Hyperplane Fitting with Heteroscedastic Covariant Errors and Intrinsic Scatter |

hyper2 | The Hyperdirichlet Distribution, Mark 2 |

HyperbolicDist | The hyperbolic distribution |

hypercube | Organizing Data in a Hypercube |

hypergate | Machine Learning of Hyperrectangular Gating Strategies for High-Dimensional Cytometry |

hypergea | Hypergeometric Tests |

hypergeo | The Gauss Hypergeometric Function |

hypersampleplan | Attribute Sampling Plan with Exact Hypergeometric Probabilities using Chebyshev Polynomials |

hyperSMURF | Hyper-Ensemble Smote Undersampled Random Forests |

hyperSpec | Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...) |

hypervolume | High Dimensional Geometry and Set Operations Using Kernel Density Estimation, Support Vector Machines, and Convex Hulls |

hyphenatr | Tools to Hyphenate Strings Using the 'Hunspell' Hyphenation Library |

HyPhy | Macroevolutionary phylogentic analysis of species trees and gene trees |

hypothesestest | Confidence Intervals and Tests of Statistical Hypotheses |

hypothesisr | Wrapper for the 'Hypothes.is' Web Annotation Service |

HYRISK | Hybrid Methods for Addressing Uncertainty in RISK Assessments |

hysteresis | Tools for Modeling Rate-Dependent Hysteretic Processes and Ellipses |

hzar | Hybrid Zone Analysis using R |

IAbin | Plotting N-T Plane for Decision on Performing an Interim Analysis |

iadf | Analysis of Intra Annual Density Fluctuations |

IalsaSynthesis | Synthesizing Information Across Collaborating Research |

IAPWS95 | Thermophysical Properties of Water and Steam |

IASD | Model Selection for Index of Asymmetry Distribution |

IAT | Cleaning and Visualizing Implicit Association Test (IAT) Data |

IATanalytics | Compute Effect Sizes and Reliability for Implicit Association Test (IAT) Data |

IATScore | Scoring Algorithm for the Implicit Association Test (IAT) |

IATscores | Implicit Association Test Scores Using Robust Statistics |

iBATCGH | Integrative Bayesian Analysis of Transcriptomic and CGH Data |

IBCF.MTME | Item Based Collaborative Filtering for Multi-Trait and Multi-Environment Data |

ibd | Incomplete Block Designs |

IBDhaploRtools | Functions for the Analysis of IBD Haplo Output |

IBDLabels | Convert Between Different IBD-State Labelling Schemes |

ibdreg | Regression Methods for IBD Linkage With Covariates |

IBDsim | Simulation of Chromosomal Regions Shared by Family Members |

ibeemd | Irregular-lattice based ensemble empirical mode decomposition |

ibelief | Belief Function Implementation |

ibm | Individual Based Models in R |

ibmcraftr | Toolkits to Develop Individual-Based Models in Infectious Disease |

ibmdbR | IBM in-Database Analytics for R |

Iboot | Iboot: iterated bootstrap tests and confidence sets |

ibr | Iterative Bias Reduction |

IBrokers | R API to Interactive Brokers Trader Workstation |

iBST | Improper Bagging Survival Tree |

ic.infer | Inequality Constrained Inference in Linear Normal Situations |

iC10 | A Copy Number and Expression-Based Classifier for Breast Tumours |

iC10TrainingData | Training datasets for iC10 package |

IC2 | Inequality and Concentration Indices and Curves |

ic50 | Standardized high-throughput evaluation of cell-based compound screens |

ica | Independent Component Analysis |

ICAFF | Imperialist Competitive Algorithm |

icamix | Estimation of ICA Mixture Models |

ICAOD | Optimal Designs for Nonlinear Models |

icapca | Mixed ICA/PCA |

icarus | Calibrates and Reweights Units in Samples |

ICBayes | Bayesian Semiparametric Models for Interval-Censored Data |

ICC | Facilitating Estimation of the Intraclass Correlation Coefficient |

ICC.Sample.Size | Calculation of Sample Size and Power for ICC |

ICcalib | Cox Model with Interval-Censored Starting Time of a Covariate |

iccbeta | Multilevel Model Intraclass Correlation for Slope Heterogeneity |

ICCbin | Facilitates Clustered Binary Data Generation, and Estimation of Intracluster Correlation Coefficient (ICC) for Binary Data |

icd | Tools for Working with ICD-9 and ICD-10 Codes, and Finding Comorbidities |

icd.data | International Classifcation of Diseases (ICD) Data |

icdGLM | EM by the Method of Weights for Incomplete Categorical Data in Generlized Linear Models |

ICE | Iterated Conditional Expectation |

ICEbox | Individual Conditional Expectation Plot Toolbox |

IceCast | Apply Statistical Post-Processing to Improve Sea Ice Predictions |

ICEinfer | Incremental Cost-Effectiveness Inference using Two Unbiased Samples |

icenReg | Regression Models for Interval Censored Data |

icensBKL | Accompanion to the Book on Interval Censoring by Bogaerts, Komarek, and Lesaffre |

icensmis | Study Design and Data Analysis in the Presence of Error-Prone Diagnostic Tests and Self-Reported Outcomes |

icesAdvice | Functions Related to ICES Advice |

icesDatras | DATRAS Trawl Database Web Services |

icesSAG | Stock Assessment Graphs Database Web Services |

icesTAF | Functions to Support the ICES Transparent Assessment Framework |

icesVocab | ICES Vocabularies Database Web Services |

ICGE | Estimation of number of clusters and identification of atypical units |

ICGOR | Fit Generalized Odds Rate Hazards Model with Interval Censored Data |

iClick | A Button-Based GUI for Financial and Economic Data Analysis |

iCluster | Integrative clustering of multiple genomic data types |

icmm | Empirical Bayes Variable Selection via ICM/M Algorithm |

icosa | Global Triangular and Penta-Hexagonal Grids Based on Tessellated Icosahedra |

icpsrdata | Reproducible Data Retrieval from the ICPSR Archive |

icr | Compute Krippendorff's Alpha |

ICRanks | Simultaneous Confidence Intervals for Ranks |

icRSF | A Modified Random Survival Forest Algorithm |

ICS | Tools for Exploring Multivariate Data via ICS/ICA |

ICSNP | Tools for Multivariate Nonparametrics |

ICSOutlier | Outlier Detection Using Invariant Coordinate Selection |

ICSShiny | ICS via a Shiny Application |

ICsurv | A package for semiparametric regression analysis of interval-censored data |

icsw | Inverse Compliance Score Weighting |

ICtest | Estimating and Testing the Number of Interesting Components in Linear Dimension Reduction |

ICV | Indirect Cross-Validation (ICV) for Kernel Density Estimation |

idar | Individual Diversity-Area Relationships |

idbg | R debugger |

idbr | R Interface to the US Census Bureau International Data Base API |

IDCard | Update Chinese ID Card Number to Eighteen Digits |

IDE | Integro-Difference Equation Spatio-Temporal Models |

idealstan | Bayesian IRT Ideal Point Models with 'Stan' |

idefix | Efficient Designs for Discrete Choice Experiments |

idem | Inference in Randomized Controlled Trials with Death and Missingness |

idendr0 | Interactive Dendrograms |

identity | Jacquard Condensed Coefficients of Identity |

ider | Various Methods for Estimating Intrinsic Dimension |

IDetect | Isolate-Detect Methodology for Multiple Change-Point Detection |

IDF | Estimation and Plotting of IDF Curves |

iDINGO | Integrative Differential Network Analysis in Genomics |

idm | Incremental Decomposition Methods |

IDmining | Intrinsic Dimension for Data Mining |

idmTPreg | Regression Model for Progressive Illness Death Data |

iDOS | Integrated Discovery of Oncogenic Signatures |

IDPmisc | Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch) |

IDPSurvival | Imprecise Dirichlet Process for Survival Analysis |

idr | Irreproducible discovery rate |

ids | Generate Random Identifiers |

IDSpatialStats | Estimate Global Clustering in Infectious Disease |

idx2r | Convert Files to and from IDX Format to Vectors, Matrices and Arrays |

iDynoR | R Analysis package for iDynoMiCS Simulation Results |

ie2misc | Irucka Embry's Miscellaneous USGS Functions |

iECAT | Integrating External Controls into Association Test |

ieeeround | Functions to set and get the IEEE rounding mode |

iemisc | Irucka Embry's Miscellaneous Functions |

iemiscdata | Irucka Embry's Miscellaneous Data Collection |

iemisctext | Irucka Embry's Miscellaneous Text Collection |

ifa | Independent Factor Analysis |

iFad | An integrative factor analysis model for drug-pathway association inference |

ifaTools | Toolkit for Item Factor Analysis with 'OpenMx' |

ifctools | Italian Fiscal Code ('Codice Fiscale') Utilities |

IFP | Identifying Functional Polymorphisms |

ifs | Iterated Function Systems |

IFSPlot | Draw Fractals using Iterated Function Systems and C++ |

ifultools | Insightful Research Tools |

ig.vancouver.2014.topcolour | Instagram 2014 Vancouver Top Colour Dataset |

iGasso | Statistical Tests and Utilities for Genetic Association |

IGG | Inverse Gamma-Gamma |

IgorR | Read Binary Files Saved by 'Igor Pro' (Including 'Neuromatic' Data) |

IGP | Interchangeable Gaussian Process Models |

igraph | Network Analysis and Visualization |

igraphdata | A Collection of Network Data Sets for the 'igraph' Package |

igraphinshiny | Use 'shiny' to Demo 'igraph' |

igraphtosonia | Convert iGraph graps to SoNIA .son files |

iGSEA | Integrative Gene Set Enrichment Analysis Approaches |

iheatmapr | Interactive, Complex Heatmaps |

ihs | Inverse Hyperbolic Sine Distribution |

IHSEP | Inhomogeneous Self-Exciting Process |

iilasso | Independently Interpretable Lasso |

IIS | Datasets to Accompany Wolfe and Schneider - Intuitive Introductory Statistics |

ijtiff | TIFF I/O for 'ImageJ' Users |

iki.dataclim | Consistency, Homogeneity and Summary Statistics of Climatological Data |

ilc | Lee-Carter Mortality Models using Iterative Fitting Algorithms |

ILS | Interlaboratory Study |

IM | Orthogonal Moment Analysis |

imageData | Aids in Processing and Plotting Data from a Lemna-Tec Scananalyzer |

imager | Image Processing Library Based on 'CImg' |

imagerExtra | Extra Image Processing Library Based on 'imager' |

imaginator | Simulate General Insurance Policies and Losses |

imagine | IMAGing engINE, Tools for Application of Image Filters to Data Matrices |

ImaginR | Delimit and Characterize Color Phenotype of the Pearl Oyster |

IMak | Item Maker |

Imap | Interactive Mapping |

imbalance | Preprocessing Algorithms for Imbalanced Datasets |

imdbapi | Get Movie, Television Data from the 'imdb' Database |

iMediate | Likelihood Methods for Mediation Analysis |

IMFData | R Interface for International Monetary Fund(IMF) Data API |

imfr | Download Data from the International Monetary Fund's Data API |

imguR | An Imgur.com API Client Package |

IMIFA | Infinite Mixtures of Infinite Factor Analysers and Related Models |

IMIS | Increamental Mixture Importance Sampling |

iml | Interpretable Machine Learning |

immer | Item Response Models for Multiple Ratings |

IMP | Interactive Model Performance Evaluation |

imp4p | Imputation for Proteomics |

IMPACT | The Impact of Items |

ImpactIV | Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method |

implyr | R Interface for Apache Impala |

import | An Import Mechanism for R |

importar | Enables Importing/Loading of Packages or Functions While Creating an Alias for Them |

ImportExport | Import and Export Data |

imprProbEst | Minimum distance estimation in an imprecise probability model |

imputeLCMD | A collection of methods for left-censored missing data imputation |

imputeMDR | The Multifactor Dimensionality Reduction (MDR) Analysis for Incomplete Data |

imputeMissings | Impute Missing Values in a Predictive Context |

imputeMulti | Imputation Methods for Multivariate Multinomial Data |

imputePSF | Impute Missing Data in Time Series Data with PSF Based Method |

imputeR | A General Imputation Framework in R |

ImputeRobust | Robust Multiple Imputation with Generalized Additive Models for Location Scale and Shape |

imputeTestbench | Test Bench for the Comparison of Imputation Methods |

imputeTS | Time Series Missing Value Imputation |

imputeYn | Imputing the Last Largest Censored Observation(s) Under Weighted Least Squares |

iMRMC | Multi-Reader, Multi-Case Analysis Methods (ROC, Agreement, and Other Metrics) |

imsig | Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours |

IMTest | Information Matrix Test for Generalized Partial Credit Models |

in2extRemes | Into the extRemes Package |

inaparc | Initialization Algorithms for Partitioning Cluster Analysis |

inarmix | Mixture models for longitudinal count data |

inbreedR | Analysing Inbreeding Based on Genetic Markers |

inca | Integer Calibration |

incadata | Recognize and Handle Data in Formats Used by Swedish Cancer Centers |

INCATome | Internal Control Analysis of Translatome Studies by Microarrays |

IncDTW | Incremental Calculation of Dynamic Time Warping |

incgraph | Incremental Graphlet Counting for Network Optimisation |

incidence | Compute, Handle, Plot and Model Incidence of Dated Events |

incR | Analysis of Incubation Data |

inctools | Incidence Estimation Tools |

IncucyteDRC | Dose Response Curves from Incucyte Proliferation Assays |

indelmiss | Insertion Deletion Analysis While Accounting for Possible Missing Data |

IndependenceTests | Nonparametric tests of independence between random vectors |

IndepTest | Nonparametric Independence Tests Based on Entropy Estimation |

IndexNumR | Index Number Calculation |

IndianTaxCalc | Indian Income Tax Calculator |

indicspecies | Relationship Between Species and Groups of Sites |

indirect | Elicitation of Independent Conditional Means Priors for Generalised Linear Models |

INDperform | Evaluation of Indicator Performances for Assessing Ecosystem States |

IndTestPP | Tests of Independence Between Point Processes in Time |

inegiR | Integrate INEGIâ€™s (Mexican Stats Office) API with R |

ineq | Measuring Inequality, Concentration, and Poverty |

iNEXT | Interpolation and Extrapolation for Species Diversity |

iNextPD | Interpolation and Extrapolation for Phylogenetic Diversity |

InfDim | Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories |

infer | Tidy Statistical Inference |

inference | Functions to extract inferential values of a fitted model object |

InferenceSMR | Inference about the standardized mortality ratio when evaluating the effect of a screening program on survival |

inferference | Methods for Causal Inference with Interference |

inferr | Inferential Statistics |

InfiniumPurify | Estimate and Account for Tumor Purity in Cancer Methylation Data Analysis |

Inflation | Core Inflation |

inflection | Finds the Inflection Point of a Curve |

influence.ME | Tools for Detecting Influential Data in Mixed Effects Models |

influence.SEM | Case Influence in Structural Equation Models |

influenceR | Software Tools to Quantify Structural Importance of Nodes in a Network |

influxdbr | R Interface to InfluxDB |

infoDecompuTE | Information Decomposition of Two-Phase Experiments |

Information | Data Exploration with Information Theory (Weight-of-Evidence and Information Value) |

InformationValue | Performance Analysis and Companion Functions for Binary Classification Models |

InformativeCensoring | Multiple Imputation for Informative Censoring |

informR | Sequence Statistics for Relational Event Models |

infotheo | Information-Theoretic Measures |

InfoTrad | Calculates the Probability of Informed Trading (PIN) |

infra | An Infrastructure Proxy Function |

infraFDTD.assist | IO Help for infraFDTD Model |

infuser | A Very Basic Templating Engine |

Infusion | Inference Using Simulation |

infutil | Information Utility |

ini | Read and Write '.ini' Files |

injectoR | R Dependency Injection |

InjurySeverityScore | Translate ICD-9 into Injury Severity Score |

INLABMA | Bayesian Model Averaging with INLA |

inlabru | Spatial Inference using Integrated Nested Laplace Approximation |

inline | Functions to Inline C, C++, Fortran Function Calls from R |

inlinedocs | Convert inline comments to documentation |

inlmisc | Miscellaneous Functions for the USGS INL Project Office |

iNOTE | Integrative Network Omnibus Total Effect Test |

inpdfr | Analyse Text Documents Using Ecological Tools |

inplace | In-place Operators for R |

InPosition | Inference Tests for ExPosition |

insect | Informatic Sequence Classification Trees |

insideRODE | insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes |

InSilicoVA | Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm |

insol | Solar Radiation |

InspectChangepoint | High-Dimensional Changepoint Estimation via Sparse Projection |

inspectr | Perform Basic Checks of Dataframes |

INSPIRE | Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets |

install.load | Check, Install and Load CRAN & USGS GRAN Packages |

installr | Using R to Install Stuff (Such As: R, 'Rtools', 'RStudio', 'Git', and More!) |

instaR | Access to Instagram API via R |

insuranceData | A Collection of Insurance Datasets Useful in Risk Classification in Non-life Insurance |

intamap | Procedures for Automated Interpolation |

intamapInteractive | Interactive Add-on Functionality for 'intamap' |

intccr | Semiparametric Competing Risks Regression under Interval Censoring |

intcensROC | Fast Spline Function Based Constrained Maximum Likelihood Estimator for AUC Estimation of Interval Censored Survival Data |

IntClust | Integrated Data Analysis via Clustering |

integIRTy | Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory |

IntegrateBs | Integration for B-Spline |

IntegratedJM | Joint Modeling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature |

IntegratedMRF | Integrated Prediction using Uni-Variate and Multivariate Random Forests |

Interact | Tests for marginal interactions in a 2 class response model |

interactionTest | Calculates Critical Test Statistics to Control False Discovery and Familywise Error Rates in Marginal Effects Plots |

InteractiveIGraph | interactive network analysis and visualization |

interAdapt | interAdapt |

Interatrix | Compute Chi-Square Measures with Corrections |

intercure | Cure Rate Estimators for Interval Censored Data |

InterfaceqPCR | GUI to Analyse qPCR Results after PMA Treatment or not |

interferenceCI | Exact Confidence Intervals in the Presence of Interference |

interflex | Multiplicative Interaction Models Diagnostics and Visualization |

interfr | Interference Color Charts for Polarized Light Microscopy |

intergraph | Coercion Routines for Network Data Objects |

interim | Scheduling Interim Analyses in Clinical Trials |

interlineaR | Importing Interlinearized Corpora and Dictionaries as Produced by Descriptive Linguistics Software |

internetarchive | An API Client for the Internet Archive |

interp | Interpolation Methods |

interplot | Plot the Effects of Variables in Interaction Terms |

Interpol | Interpolation of amino acid sequences |

Interpol.T | Hourly interpolation of multiple temperature daily series |

InterpretMSSpectrum | Interpreting High Resolution Mass Spectra |

interpretR | Binary Classifier and Regression Model Interpretation Functions |

InterSIM | Simulation of Inter-Related Genomic Datasets |

InterVA4 | Replicate and Analyse 'InterVA4' |

InterVA5 | Replicate and Analyse 'InterVA5' |

interval | Weighted Logrank Tests and NPMLE for interval censored data |

intervals | Tools for Working with Points and Intervals |

IntervalSurgeon | Operating on Integer-Bounded Intervals |

interventionalDBN | Interventional Inference for Dynamic Bayesian Networks |

IntLik | Numerical Integration for Integrated Likelihood |

inTrees | Interpret Tree Ensembles |

intReg | Interval Regression |

intRegGOF | Integrated Regression Goodness of Fit |

intrinsicDimension | Intrinsic Dimension Estimation |

introgress | methods for analyzing introgression between divergent lineages |

intrval | Relational Operators for Intervals |

intRvals | Analysis of Time-Ordered Event Data with Missed Observations |

intsvy | International Assessment Data Manager |

intubate | Interface to Popular R Functions for Data Science Pipelines |

inum | Interval and Enum-Type Representation of Vectors |

InvariantCausalPrediction | Invariant Causal Prediction |

InvasionCorrection | Invasion Correction |

Inventorymodel | Inventory Models |

investr | Inverse Estimation/Calibration Functions |

invgamma | The Inverse Gamma Distribution |

invGauss | Threshold regression that fits the (randomized drift) inverse Gaussian distribution to survival data |

invLT | Inversion of Laplace-Transformed Functions |

io | A Unified Framework for Input-Output Operations in R |

ioncopy | Calling Copy Number Alterations in Amplicon Sequencing Data |

ionflows | Calculate the Number of Required Flows for Semiconductor Sequencing |

ionr | Test for Indifference of Indicator |

iopsych | Methods for Industrial/Organizational Psychology |

iosmooth | Functions for Smoothing with Infinite Order Flat-Top Kernels |

iotables | Importing and Manipulating Symmetric Input-Output Tables |

iotools | I/O Tools for Streaming |

IPCAPS | Iterative Pruning to Capture Population Structure |

ipdmeta | Tools for subgroup analyses with multiple trial data using aggregate statistics |

ipdw | Spatial Interpolation by Inverse Path Distance Weighting |

ipeaData | Getting Data from IPEADATA |

IPEC | Root Mean Square Curvature Calculation |

ipflasso | Integrative Lasso with Penalty Factors |

ipfp | Fast Implementation of the Iterative Proportional Fitting Procedure in C |

ipft | Indoor Positioning Fingerprinting Toolset |

iplots | iPlots - interactive graphics for R |

IPMpack | Builds and analyses Integral Projection Models (IPMs) |

IPMRF | Intervention in Prediction Measure (IPM) for Random Forests |

ipred | Improved Predictors |

iprior | Regression Modelling using I-Priors |

ips | Interfaces to Phylogenetic Software in R |

iptmnetr | Interface to the 'iPTMnet' API |

IPtoCountry | Convert IP Addresses to Country Names or Full Location with Geoplotting |

iptools | Manipulate, Validate and Resolve 'IP' Addresses |

ipumsr | Read 'IPUMS' Extract Files |

ipw | Estimate Inverse Probability Weights |

ipwErrorY | Inverse Probability Weighting Estimation of Average Treatment Effect with Outcome Misclassification |

IPWsurvival | Propensity Score Based Adjusted Survival Curves and Corresponding Log-Rank Statistic |

IQCC | Improved Quality Control Charts |

iqLearn | Interactive Q-Learning |

irace | Iterated Racing for Automatic Algorithm Configuration |

iRafNet | Integrative Random Forest for Gene Regulatory Network Inference |

IRATER | A R Interface for the Instantaneous RATEs (IRATE) Model |

ircor | Correlation Coefficients for Information Retrieval |

IRdisplay | 'Jupyter' Display Machinery |

iRefR | iRefIndex Manager |

iRegression | Regression Methods for Interval-Valued Variables |

iRepro | Reproducibility for Interval-Censored Data |

iRF | iterative Random Forests |

IrishDirectorates | Irish Companies' Boards from 2003 to 2013 |

IRISMustangMetrics | Statistics and Metrics for Seismic Data |

IRISSeismic | Classes and Methods for Seismic Data Analysis |

irlba | Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices |

IROmiss | Imputation Regularized Optimization Algorithm |

irr | Various Coefficients of Interrater Reliability and Agreement |

irregulAR1 | Functions for Irregularly Sampled AR(1) Processes |

irrNA | Coefficients of Interrater Reliability - Generalized for Randomly Incomplete Datasets |

irtDemo | Item Response Theory Demo Collection |

irtoys | A Collection of Functions Related to Item Response Theory (IRT) |

IRTpp | Estimating IRT Parameters using the IRT Methodology |

irtProb | Utilities and Probability Distributions Related to Multidimensional Person Item Response Models |

irtrees | Estimation of Tree-Based Item Response Models |

irtreliability | Item Response Theory Reliability |

IRTShiny | Item Response Theory via Shiny |

isa2 | The Iterative Signature Algorithm |

ISBF | Iterative Selection of Blocks of Features - ISBF |

ISDA.R | interval symbolic data analysis for R |

isdals | Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences |

iSDM | Invasive Species Distribution Modelling |

isdparser | Parse 'NOAA' Integrated Surface Data Files |

IsingFit | Fitting Ising Models Using the ELasso Method |

isingLenzMC | Monte Carlo for Classical Ising Model |

IsingSampler | Sampling Methods and Distribution Functions for the Ising Model |

island | Stochastic Island Biogeography Theory Made Easy |

ISLR | Data for an Introduction to Statistical Learning with Applications in R |

ISM | Interpretive Structural Modelling (ISM) |

ismev | An Introduction to Statistical Modeling of Extreme Values |

isni | Index of Local Sensitivity to Nonignorability |

isnullptr | Check if an 'externalptr' is a Null Pointer |

Iso | Functions to Perform Isotonic Regression |

IsoCI | Confidence intervals for current status data based on transformations and bootstrap |

isocir | Isotonic Inference for Circular Data |

ISOcodes | Selected ISO Codes |

IsoGene | Order-Restricted Inference for Microarray Experiments |

isopam | Isopam (Clustering) |

isopat | Calculation of isotopic pattern for a given molecular formula |

isoph | Isotonic Proportional Hazards Model |

IsoplotR | Statistical Toolbox for Radiometric Geochronology |

ISOpureR | Deconvolution of Tumour Profiles |

IsoriX | Isoscape Computation and Inference of Spatial Origins using Mixed Models |

IsoSpecR | The IsoSpec Algorithm |

isotone | Active Set and Generalized PAVA for Isotone Optimization |

isotonic.pen | Penalized Isotonic Regression in one and two dimensions |

IsotopeR | Stable Isotope Mixing Model |

ISOweek | Week of the year and weekday according to ISO 8601 |

isqg | In Silico Quantitative Genetics |

ISR3 | Iterative Sequential Regression |

isva | Independent Surrogate Variable Analysis |

ISwR | Introductory Statistics with R |

italy | The Italian Survey on Household and Wealth, 2008 and 2010 |

itan | Item Analysis for Multiple Choice Tests |

itcSegment | Individual Tree Crowns Segmentation |

iteRates | Parametric rate comparison |

iterators | Provides Iterator Construct for R |

iterLap | Approximate Probability Densities by Iterated Laplace Approximations |

iterpc | Efficient Iterator for Permutations and Combinations |

itertools | Iterator Tools |

itertools2 | itertools2: Functions creating iterators for efficient looping |

ITNr | Analysis of the International Trade Network |

iTOP | Inferring the Topology of Omics Data |

itree | Tools for classification and regression trees, with an emphasis on interpretability |

ITRSelect | Variable Selection for Optimal Individualized Dynamic Treatment Regime |

itsadug | Interpreting Time Series and Autocorrelated Data Using GAMMs |

itsmr | Time Series Analysis Using the Innovations Algorithm |

itunesr | Access iTunes App Store Ratings and Reviews using R |

IUPS | Incorporating Uncertainties in Propensity Scores |

ivbma | Bayesian Instrumental Variable Estimation and Model Determination via Conditional Bayes Factors |

ivfixed | Instrumental fixed effect panel data model |

ivlewbel | Uses heteroscedasticity to estimate mismeasured and endogenous regressor models |

ivmodel | Statistical Inference and Sensitivity Analysis for Instrumental Variables Model |

ivpack | Instrumental Variable Estimation |

ivpanel | Instrumental Panel Data Models |

ivprobit | Instrumental Variables Probit Model |

ivregEX | Create Independent Evidence in IV Analyses and Do Sensitivity Analysis in Regression and IV Analysis |

ivtools | Instrumental Variables |

iWeigReg | Improved methods for causal inference and missing data problems |

iWISA | Wavelet-Based Index of Storm Activity |

jaatha | Simulation-Based Maximum Likelihood Parameter Estimation |

jaccard | Test Similarity Between Binary Data using Jaccard/Tanimoto Coefficients |

jackknifeKME | Jackknife Estimates of Kaplan-Meier Estimators or Integrals |

jackstraw | Statistical Inference of Variables Driving Systematic Variation |

jacpop | Jaccard Index for Population Structure Identification |

JADE | Blind Source Separation Methods Based on Joint Diagonalization and Some BSS Performance Criteria |

jagsUI | A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses |

JAGUAR | Joint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL) |

james.analysis | Analysis Tools for the 'JAMES' Framework |

janeaustenr | Jane Austen's Complete Novels |

janitor | Simple Tools for Examining and Cleaning Dirty Data |

jaod | Directory of Open Access Journals Client |

JASPAR | R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices |

JavaGD | Java Graphics Device |

JBTools | Misc Small Tools and Helper Functions for Other Code of J. Buttlar |

jcext | Extended Classification of Weather Types |

jcolors | Colors Palettes for R and 'ggplot2', Additional Themes for 'ggplot2' |

Jdmbs | Monte Carlo Option Pricing Algorithms for Jump Diffusion Models with Correlational Companies |

jdx | 'Java' Data Exchange for 'R' and 'rJava' |

jeek | A Fast and Scalable Joint Estimator for Integrating Additional Knowledge in Learning Multiple Related Sparse Gaussian Graphical Models |

jetset | One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays |

JFE | A Menu-Driven GUI for Analyzing and Modelling Data of Just Finance and Econometrics |

JGEE | Joint Generalized Estimating Equation Solver |

JGL | Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes |

JGR | Java GUI for R |

jiebaR | Chinese Text Segmentation |

jiebaRD | Chinese Text Segmentation Data for jiebaR Package |

JM | Joint Modeling of Longitudinal and Survival Data |

JMbayes | Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach |

jmcm | Joint Mean-Covariance Models using 'Armadillo' and S4 |

JMcmprsk | Joint Models for Longitudinal Measurements and Competing Risks Failure Time Data |

jmdem | Fitting Joint Mean and Dispersion Effects Models |

JMdesign | Joint Modeling of Longitudinal and Survival Data - Power Calculation |

jmetrik | Tools for Interacting with 'jMetrik' |

Jmisc | Julian Miscellaneous Function |

jmotif | Time Series Analysis Toolkit Based on Symbolic Aggregate Dicretization, i.e. SAX |

jmuOutlier | Permutation Tests for Nonparametric Statistics |

jmv | The 'jamovi' Analyses |

jmvcore | Dependencies for the 'jamovi' Framework |

jocre | Joint Confidence Regions |

Johnson | Johnson Transformation |

joineR | Joint Modelling of Repeated Measurements and Time-to-Event Data |

joineRmeta | Joint Modelling for Meta-Analytic (Multi-Study) Data |

joineRML | Joint Modelling of Multivariate Longitudinal Data and Time-to-Event Outcomes |

joint.Cox | Penalized Likelihood Estimation and Dynamic Prediction under the Joint Frailty-Copula Models Between Tumour Progression and Death for Meta-Analysis |

JointAI | Joint Analysis and Imputation of Incomplete Data |

jointDiag | Joint Approximate Diagonalization of a Set of Square Matrices |

JointModel | Semiparametric Joint Models for Longitudinal and Counting Processes |

jointNmix | Joint N-Mixture Models for Site-Associated Species |

jointPm | Risk estimation using the joint probability method |

jointseg | Joint Segmentation of Multivariate (Copy Number) Signals |

joinXL | Perform Joins or Minus Queries on 'Excel' Files |

jomo | Multilevel Joint Modelling Multiple Imputation |

JOP | Joint Optimization Plot |

JoSAE | Unit-Level and Area-Level Small Area Estimation |

jose | JavaScript Object Signing and Encryption |

JOUSBoost | Implements Under/Oversampling for Probability Estimation |

jpeg | Read and write JPEG images |

JPEN | Covariance and Inverse Covariance Matrix Estimation Using Joint Penalty |

jpmesh | Utilities for Japanese Mesh Code |

jpndistrict | Create Japanese Administration Area and Office Maps |

jqr | Client for 'jq', a 'JSON' Processor |

JRF | Joint Random Forest (JRF) for the Simultaneous Estimation of Multiple Related Networks |

jrich | Jack-Knife Support for Evolutionary Distinctiveness Indices I and W |

jrvFinance | Basic Finance; NPV/IRR/Annuities/Bond-Pricing; Black Scholes |

js | Tools for Working with JavaScript in R |

JSM | Semiparametric Joint Modeling of Survival and Longitudinal Data |

jSonarR | jSonar Analytics Platform API for R |

jsonld | JSON for Linking Data |

jsonlite | A Robust, High Performance JSON Parser and Generator for R |

jsonvalidate | Validate 'JSON' |

jsr223 | A 'Java' Platform Integration for 'R' with Programming Languages 'Groovy', 'JavaScript', 'JRuby' ('Ruby'), 'Jython' ('Python'), and 'Kotlin' |

jsTree | Create Interactive Trees with the 'jQuery' 'jsTree' Plugin |

jtGWAS | Efficient Jonckheere-Terpstra Test Statistics |

jtools | Analysis and Presentation of Social Scientific Data |

jtrans | Johnson Transformation for Normality |

jug | A Simple Web Framework for R |

Julia | Fractal Image Data Generator |

JuliaCall | Seamless Integration Between R and 'Julia' |

JumpTest | Financial Jump Detection |

junctions | The Breakdown of Genomic Ancestry Blocks in Hybrid Lineages |

JuniperKernel | Kernel for 'Jupyter' |

junr | Access Open Data Through the 'Junar' API |

jvnVaR | Value at Risk |

JWileymisc | Miscellaneous Utilities and Functions |

jwutil | Tools for Data Manipulation and Testing |

kableExtra | Construct Complex Table with 'kable' and Pipe Syntax |

kader | Kernel Adaptive Density Estimation and Regression |

kamila | Methods for Clustering Mixed-Type Data |

kangar00 | Kernel Approaches for Nonlinear Genetic Association Regression |

KANT | Package to identify and sort genes overexpressed |

kantorovich | Kantorovich Distance Between Probability Measures |

kaphom | Test the Homogeneity of Kappa Statistics |

KappaGUI | An R-Shiny Application for Calculating Cohen's and Fleiss' Kappa |

kappalab | Non-Additive Measure and Integral Manipulation Functions |

kappaSize | Sample Size Estimation Functions for Studies of Interobserver Agreement |

KappaV | Calculates "vectorial Kappa", an index of congruence between patchy mosaics |

kaps | K-Adaptive Partitioning for Survival data |

karaoke | Remove Vocals from a Song |

KarsTS | An Interface for Microclimate Time Series |

kazaam | Tools for Tall Distributed Matrices |

kcirt | k-Cube Thurstonian IRT Models |

kde1d | Univariate Kernel Density Estimation |

kdecopula | Kernel Smoothing for Bivariate Copula Densities |

kdensity | Kernel Density Estimation with Parametric Starts and Asymmetric Kernels |

kdetrees | Nonparametric method for identifying discordant phylogenetic trees |

kdevine | Multivariate Kernel Density Estimation with Vine Copulas |

kdist | K-Distribution and Weibull Paper |

kdtools | Tools for Working with Multidimensional Data |

kedd | Kernel Estimator and Bandwidth Selection for Density and Its Derivatives |

keep | Arrays with Better Control over Dimension Dropping |

kehra | Collect, Assemble and Model Air Pollution, Weather and Health Data |

kelvin | Calculate Solutions to the Kelvin Differential Equation using Bessel Functions |

Kendall | Kendall rank correlation and Mann-Kendall trend test |

kendallRandomWalks | Simulate and Visualize Kendall Random Walks and Related Distributions |

KENDL | Kernel-Smoothed Nonparametric Methods for Environmental Exposure Data Subject to Detection Limits |

KenSyn | Knowledge Synthesis in Agriculture - From Experimental Network to Meta-Analysis |

kequate | The Kernel Method of Test Equating |

keras | R Interface to 'Keras' |

kerasformula | A High-Level R Interface for Neural Nets |

kerasR | R Interface to the Keras Deep Learning Library |

kerdiest | Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions |

KERE | Expectile Regression in Reproducing Kernel Hilbert Space |

kergp | Gaussian Process Laboratory |

kernDeepStackNet | Kernel Deep Stacking Networks |

kerndwd | Distance Weighted Discrimination (DWD) and Kernel Methods |

kernelboot | Smoothed Bootstrap and Random Generation from Kernel Densities |

kernelFactory | Kernel Factory: An Ensemble of Kernel Machines |

Kernelheaping | Kernel Density Estimation for Heaped and Rounded Data |

KernelKnn | Kernel k Nearest Neighbors |

kernlab | Kernel-Based Machine Learning Lab |

kernplus | A Kernel Regression-Based Multidimensional Wind Turbine Power Curve |

kernscr | Kernel Machine Score Test for Semi-Competing Risks |

KernSmooth | Functions for Kernel Smoothing Supporting Wand & Jones (1995) |

KernSmoothIRT | Nonparametric Item Response Theory |

kexpmv | Matrix Exponential using Krylov Subspace Routines |

keyholder | Store Data About Rows |

keyplayer | Locating Key Players in Social Networks |

keypress | Wait for a Key Press in a Terminal |

keyring | Access the System Credential Store from R |

keyringr | Decrypt Passwords from Gnome Keyring, Windows Data Protection API and macOS Keychain |

KFAS | Kalman Filter and Smoother for Exponential Family State Space Models |

kfda | Kernel Fisher Discriminant Analysis |

kfigr | Integrated Code Chunk Anchoring and Referencing for R Markdown Documents |

KFKSDS | Kalman Filter, Smoother and Disturbance Smoother |

kgc | Koeppen-Geiger Climatic Zones |

KGode | Kernel Based Gradient Matching for Parameter Inference in Ordinary Differential Equations |

kgschart | KGS Rank Graph Parser |

kidney.epi | Kidney Functions: Clinical and Epidemiological |

kimisc | Kirill's Miscellaneous Functions |

kin.cohort | Analysis of Kin-Cohort Studies |

kineticF | Framework for the Analysis of Kinetic Visual Field Data |

kinfit | Routines for Fitting Kinetic Models to Chemical Degradation Data |

kinship2 | Pedigree Functions |

kirby21.base | Example Data from the Multi-Modal MRI 'Reproducibility' Resource |

kirby21.fmri | Example Functional Imaging Data from the Multi-Modal MRI 'Reproducibility' Resource |

kirby21.t1 | Example T1 Structural Data from the Multi-Modal MRI 'Reproducibility' Resource |

kissmig | a Keep It Simple Species Migration Model |

kitagawa | Spectral response of water wells to harmonic strain and pressure |

kknn | Weighted k-Nearest Neighbors |

klaR | Classification and Visualization |

klausuR | Multiple Choice Test Evaluation |

klin | Linear equations with Kronecker structure |

km.ci | Confidence intervals for the Kaplan-Meier estimator |

kmconfband | Kaplan-Meier Simultaneous Confidence Band for the Survivor Function |

kmcudaR | 'Yinyang' K-Means and K-NN using NVIDIA CUDA |

KMDA | Kernel-Based Metabolite Differential Analysis |

kmed | Distance-Based k-Medoids |

kmer | Fast K-Mer Counting and Clustering for Biological Sequence Analysis |

KMgene | Gene-Based Association Analysis for Complex Traits |

kmi | Kaplan-Meier Multiple Imputation for the Analysis of Cumulative Incidence Functions in the Competing Risks Setting |

kml | K-Means for Longitudinal Data |

kml3d | K-Means for Joint Longitudinal Data |

kmlcov | Clustering longitudinal data using the likelihood as a metric of distance |

kmlShape | K-Means for Longitudinal Data using Shape-Respecting Distance |

kmodR | K-Means with Simultaneous Outlier Detection |

KMsurv | Data sets from Klein and Moeschberger (1997), Survival Analysis |

KnapsackSampling | Generate Feasible Samples of a Knapsack Problem |

knitcitations | Citations for 'Knitr' Markdown Files |

knitLatex | 'Knitr' Helpers - Mostly Tables |

knitr | A General-Purpose Package for Dynamic Report Generation in R |

knitrBootstrap | 'knitr' Bootstrap Framework |

knitrProgressBar | Provides Progress Bars in 'knitr' |

knncat | Nearest-neighbor Classification with Categorical Variables |

knnGarden | Multi-distance based k-Nearest Neighbors |

knnIndep | Independence tests and benchmarks |

knnp | Time Series Prediction using K-Nearest Neighbors Algorithm (Parallel) |

knockoff | The Knockoff Filter for Controlled Variable Selection |

Knoema | Interface to the Knoema API |

knor | Non-Uniform Memory Access ('NUMA') Optimized, Parallel K-Means |

knotR | Knot Diagrams using Bezier Curves |

KnowBR | Discriminating Well Surveyed Spatial Units from Exhaustive Biodiversity Databases |

kntnr | R Client for 'kintone' API |

KODAMA | Knowledge Discovery by Accuracy Maximization |

kofdata | Get Data from the 'KOF Datenservice' API |

kofnGA | A Genetic Algorithm for Fixed-Size Subset Selection |

KOGMWU | Functional Summary and Meta-Analysis of Gene Expression Data |

kohonen | Supervised and Unsupervised Self-Organising Maps |

kokudosuuchi | R Interface to 'Kokudo Suuchi' API |

kolmim | An Improved Evaluation of Kolmogorov's Distribution |

komadown | R Markdown Templates for the 'KOMA-Script' Classes |

komaletter | Simple yet Flexible Letters via the 'KOMA-Script LaTeX Bundle' |

konfound | Quantify the Robustness of Causal Inferences |

KoNLP | Korean NLP Package |

koRpus | An R Package for Text Analysis |

koRpus.lang.en | Language Support for 'koRpus' Package: English |

KoulMde | Koul's Minimum Distance Estimation in Linear Regression and Autoregression Model by Coordinate Descent Algorithm |

Kpart | Cubic Spline Fitting with Knot Selection |

kpcalg | Kernel PC Algorithm for Causal Structure Detection |

kpeaks | Determination of K Using Peak Counts of Features for Clustering |

kpmt | Known Population Median Test |

kpodclustr | Method for Clustering Partially Observed Data |

KraljicMatrix | A Quantified Implementation of the Kraljic Matrix |

kriens | Continuation Passing Style Development |

KRIG | Spatial Statistic with Kriging |

kriging | Ordinary Kriging |

KrigInv | Kriging-based Inversion for Deterministic and Noisy Computer Experiments |

KRIS | Keen and Reliable Interface Subroutines for Bioinformatic Analysis |

KRLS | Kernel-Based Regularized Least Squares |

krm | Kernel Based Regression Models |

KRMM | Kernel Ridge Mixed Model |

ks | Kernel Smoothing |

kSamples | K-Sample Rank Tests and their Combinations |

kscons | A Bayesian Approach for Protein Residue Contact Prediction using the Knob-Socket Model of Protein Tertiary Structure |

KScorrect | Lilliefors-Corrected Kolmogorov-Smirnov Goodness-of-Fit Tests |

KSD | Goodness-of-Fit Tests using Kernelized Stein Discrepancy |

KSEAapp | Kinase-Substrate Enrichment Analysis |

kselection | Selection of K in K-Means Clustering |

KSgeneral | Computing P-Values of the K-S Test for (Dis)Continuous Null Distribution |

ksrlive | Identify Kinase Substrate Relationships Using Dynamic Data |

kst | Knowledge Space Theory |

kstIO | Knowledge Space Theory Input/Output |

KTensorGraphs | Co-Tucker3 Analysis of Two Sequences of Matrices |

ktsolve | Configurable function for solving families of nonlinear equations |

ktspair | k-Top Scoring Pairs for Microarray Classification |

kulife | Datasets and functions from the (now non-existing) Faculty of Life Sciences, University of Copenhagen |

kutils | Project Management Tools |

kvh | Read/Write Files in Key-Value-Hierarchy Format |

kwb.hantush | Calculation of Groundwater Mounding Beneath an Infiltration Basin |

kyotil | Utility Functions for Statistical Analysis Report Generation and Monte Carlo Studies |

kza | Kolmogorov-Zurbenko Adaptive Filters |

kzfs | Multi-Scale Motions Separation with Kolmogorov-Zurbenko Periodogram Signals |

kzft | Kolmogorov-Zurbenko Fourier Transform and Applications |

kzs | Kolmogorov-Zurbenko Spatial Smoothing and Applications |

l0ara | Sparse Generalized Linear Model with L0 Approximation for Feature Selection |

L0Learn | Fast Algorithms for Best Subset Selection |

l1kdeconv | Deconvolution for LINCS L1000 Data |

L1pack | Routines for L1 Estimation |

l2boost | Friedman's Boosting Algorithm for Regularized Linear Regression |

labdsv | Ordination and Multivariate Analysis for Ecology |

label.switching | Relabelling MCMC Outputs of Mixture Models |

labeledLoop | Labeled Loop |

labeling | Axis Labeling |

labelled | Manipulating Labelled Data |

labelrank | Predicting Rankings of Labels |

labelVector | Label Attributes for Atomic Vectors |

LabourMarketAreas | Identification, Tuning, Visualisation and Analysis of Labour Market Areas |

labstatR | Libreria Del Laboratorio Di Statistica Con R |

labstats | Data Sets for the Book "Experimental Design for Laboratory Biologists" |

lacm | Latent Autoregressive Count Models |

laeken | Estimation of indicators on social exclusion and poverty |

laercio | Duncan test, Tukey test and Scott-Knott test |

LaF | Fast Access to Large ASCII Files |

lagged | Classes and Methods for Lagged Objects |

LAGOSNE | Interface to the Lake Multi-Scaled Geospatial and Temporal Database |

laGP | Local Approximate Gaussian Process Regression |

lagsarlmtree | Spatial Lag Model Trees |

Lahman | Sean 'Lahman' Baseball Database |

LakeMetabolizer | Tools for the Analysis of Ecosystem Metabolism |

lakemorpho | Lake Morphometry Metrics |

laketemps | Lake Temperatures Collected by Situ and Satellite Methods from 1985-2009 |

LAM | Some Latent Variable Models |

lambda.r | Modeling Data with Functional Programming |

lambda.tools | Tools for Modeling Data with Functional Programming |

Lambda4 | Collection of Internal Consistency Reliability Coefficients |

LambertW | Probabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed Data |

lamW | Lambert-W Function |

LANDD | Liquid Association for Network Dynamics Detection |

landest | Landmark Estimation of Survival and Treatment Effect |

landpred | Landmark Prediction of a Survival Outcome |

landsat | Radiometric and topographic correction of satellite imagery |

landsat8 | Landsat 8 Imagery Rescaled to Reflectance, Radiance and/or Temperature |

landscapeR | Categorical Landscape Simulation Facility |

landscapetools | Landscape Utility Toolbox |

landsepi | Landscape Epidemiology and Evolution |

Langevin | Langevin Analysis in One and Two Dimensions |

languagelayeR | Access the 'languagelayer' API |

languageR | Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics" |

languageserver | Language Server Protocol |

lans2r | Work with Look at NanoSIMS Data in R |

LaplaceDeconv | Laplace Deconvolution with Noisy Discrete Non-Equally Spaced Observations on a Finite Time Interval |

LaplacesDemon | Complete Environment for Bayesian Inference |

lar | History of labour relations package |

LARF | Local Average Response Functions for Instrumental Variable Estimation of Treatment Effects |

largeList | Serialization Interface for Large List Objects |

lars | Least Angle Regression, Lasso and Forward Stagewise |

lasso2 | L1 constrained estimation aka ‘lasso’ |

LassoBacktracking | Modelling Interactions in High-Dimensional Data with Backtracking |

lassopv | Nonparametric P-Value Estimation for Predictors in Lasso |

lassoscore | High-Dimensional Inference with the Penalized Score Test |

lassoshooting | L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting |

LassoSIR | Sparsed Sliced Inverse Regression via Lasso |

latdiag | Draws Diagrams Useful for Checking Latent Scales |

latentnet | Latent Position and Cluster Models for Statistical Networks |

later | Utilities for Delaying Function Execution |

Laterality | Functions to Calculate Common Laterality Statistics in Primatology |

latex2exp | Use LaTeX Expressions in Plots |

latexpdf | Convert Tables to PDF or PNG |

lattice | Trellis Graphics for R |

latticeDensity | Density estimation and nonparametric regression on irregular regions |

latticeExtra | Extra Graphical Utilities Based on Lattice |

LatticeKrig | Multiresolution Kriging Based on Markov Random Fields |

lava | Latent Variable Models |

lava.tobit | Latent Variable Models with Censored and Binary Outcomes |

lavaan | Latent Variable Analysis |

lavaan.shiny | Latent Variable Analysis with Shiny |

lavaan.survey | Complex Survey Structural Equation Modeling (SEM) |

lavaanPlot | Path Diagrams for Lavaan Models via DiagrammeR |

lavaSearch2 | Tools for Model Specification in the Latent Variable Framework |

Lavash | Lava Estimation for the Sum of Sparse and Dense Signals |

lawn | Client for 'Turfjs' for 'Geospatial' Analysis |

lawstat | Tools for Biostatistics, Public Policy, and Law |

lazy | Lazy Learning for Local Regression |

lazyData | A LazyData Facility |

lazyeval | Lazy (Non-Standard) Evaluation |

lazyrmd | Render R Markdown Outputs Lazily |

lazysql | Lazy SQL Programming |

lazyWeave | LaTeX Wrappers for R Users |

lba | Latent Budget Analysis for Compositional Data |

lbfgs | Limited-memory BFGS Optimization |

lbfgsb3 | Limited Memory BFGS Minimizer with Bounds on Parameters |

lbiassurv | Length-biased correction to survival curve estimation |

lbreg | Log-Binomial Regression with Constrained Optimization |

LBSPR | Length-Based Spawning Potential Ratio |

LCA | Localised Co-Dependency Analysis |

LCAextend | Latent Class Analysis (LCA) with Familial Dependence in Extended Pedigrees |

LCAvarsel | Variable Selection for Latent Class Analysis |

lcda | Latent Class Discriminant Analysis |

LCF | Linear Combination Fitting |

LCFdata | Data sets for package “LMERConvenienceFunctions” |

lclGWAS | Efficient Estimation of Discrete-Time Multivariate Frailty Model Using Exact Likelihood Function for Grouped Survival Data |

LCMCR | Bayesian Non-Parametric Latent-Class Capture-Recapture |

lcmm | Extended Mixed Models Using Latent Classes and Latent Processes |

lcopula | Liouville Copulas |

LCox | A Tool for Selecting Genes Related to Survival Outcomes using Longitudinal Gene Expression Data |

lctools | Local Correlation, Spatial Inequalities, Geographically Weighted Regression and Other Tools |

lcyanalysis | Stock Data Analysis Functions |

lda | Collapsed Gibbs Sampling Methods for Topic Models |

ldamatch | Selection of Statistically Similar Research Groups |

ldat | Large Data Sets |

ldatuning | Tuning of the Latent Dirichlet Allocation Models Parameters |

LDAvis | Interactive Visualization of Topic Models |

ldbod | Local Density-Based Outlier Detection |

ldbounds | Lan-DeMets Method for Group Sequential Boundaries |

LDcorSV | Linkage Disequilibrium Corrected by the Structure and the Relatedness |

LDheatmap | Graphical Display of Pairwise Linkage Disequilibria Between SNPs |

ldhmm | Hidden Markov Model for Financial Time-Series Based on Lambda Distribution |

LDOD | Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models |

LDPD | Probability of Default Calibration |

ldr | Methods for likelihood-based dimension reduction in regression |

LDRTools | Tools for Linear Dimension Reduction |

LDtests | Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium |

leabRa | The Artificial Neural Networks Algorithm Leabra |

leaderCluster | Leader Clustering Algorithm |

LeafArea | Rapid Digital Image Analysis of Leaf Area |

leaflet | Create Interactive Web Maps with the JavaScript 'Leaflet' Library |

leaflet.esri | 'ESRI' Bindings for the 'leaflet' Package |

leaflet.extras | Extra Functionality for 'leaflet' Package |

leaflet.minicharts | Mini Charts for Interactive Maps |

leafletCN | An R Gallery for China and Other Geojson Choropleth Map in Leaflet |

leafletR | Interactive Web-Maps Based on the Leaflet JavaScript Library |

leafSTAR | Silhouette to Area Ratio of Tilted Surfaces |

LEANR | Finds "Local Subnetworks" Within an Interaction Network which Show Enrichment for Differentially Expressed Genes |

LEAP | Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering |

LEAPFrOG | Likelihood Estimation of Admixture in Parents From Offspring Genotypes |

leapp | latent effect adjustment after primary projection |

leaps | Regression Subset Selection |

LeArEst | Border and Area Estimation of Data Measured with Additive Error |

LearnBayes | Functions for Learning Bayesian Inference |

LearnGeom | Learning Plane Geometry |

learningCurve | An Implementation of Crawford's and Wright's Learning Curve Production Functions |

learningr | Data and functions to accompany the book "Learning R" |

learNN | Examples of Neural Networks |

learnr | Interactive Tutorials for R |

learnrbook | Datasets for Aphalo's "Learn R" Book |

learnstats | An Interactive Environment for Learning Statistics |

leerSIECyL | Read Data from the SIE |

lefse | Phylogenetic and Functional Analyses for Ecology |

LEGIT | Latent Environmental & Genetic InTeraction (LEGIT) Model |

leiv | Bivariate Linear Errors-In-Variables Estimation |

LeLogicielR | Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (French) |

lemon | Freshing Up your 'ggplot2' Plots |

LendingClub | A Lending Club API Wrapper |

lero.lero | Generate 'Lero Lero' Quotes |

lessR | Less Code, More Results |

lestat | A Package for Learning Statistics |

letsR | Tools for Data Handling and Analysis in Macroecology |

lettercase | Utilities for Formatting Strings with Consistent Capitalization, Word Breaks and White Space |

lexicon | Lexicons for Text Analysis |

lexiconPT | Lexicons for Portuguese Text Analysis |

LexisNexisTools | Working with Files from 'LexisNexis' |

LexisPlotR | Plot Lexis Diagrams for Demographic Purposes |

lexRankr | Extractive Summarization of Text with the LexRank Algorithm |

lfactors | Factors with Levels |

lfda | Local Fisher Discriminant Analysis |

LFDR.MLE | Estimation of the Local False Discovery Rates by Type II Maximum Likelihood Estimation |

LFDREmpiricalBayes | Estimating Local False Discovery Rates Using Empirical Bayes Methods |

lfe | Linear Group Fixed Effects |

lfl | Linguistic Fuzzy Logic |

lfstat | Calculation of Low Flow Statistics for Daily Stream Flow Data |

lg | Locally Gaussian Distributions: Estimation and Methods |

lga | Tools for linear grouping analysis (LGA) |

lgarch | Simulation and Estimation of Log-GARCH Models |

lgcp | Log-Gaussian Cox Process |

LGEWIS | Tests for Genetic Association/Gene-Environment Interaction in Longitudinal Studies |

LGRF | Set-Based Tests for Genetic Association in Longitudinal Studies |

lgtdl | A Set of Methods for Longitudinal Data Objects |

lhmixr | Fit Sex-Specific Life History Models with Missing Classifications |

lhs | Latin Hypercube Samples |

libamtrack | Computational Routines for Proton and Ion Radiotherapy |

libcoin | Linear Test Statistics for Permutation Inference |

LiblineaR | Linear Predictive Models Based on the 'LIBLINEAR' C/C++ Library |

LiblineaR.ACF | Linear Classification with Online Adaptation of Coordinate Frequencies |

Libra | Linearized Bregman Algorithms for Generalized Linear Models |

librarian | Install, Update, Load Packages from CRAN and 'GitHub' in One Step |

librarysnapshot | Library Snapshot for Packages and Dependencies in Use by Current Session |

libsoc | Read, Create and Write 'PharmML' Standard Output (so) XML Files |

libstableR | Fast and Accurate Evaluation, Random Number Generation and Parameter Estimation of Skew Stable Distributions |

LICORS | Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data |

lidR | Airborne LiDAR Data Manipulation and Visualization for Forestry Applications |

lifecontingencies | Financial and Actuarial Mathematics for Life Contingencies |

lifecourse | Quantification of Lifecourse Fluidity |

LifeHist | Life History Models of Individuals |

lifelogr | Life Logging |

LifeTables | Two-Parameter HMD Model Life Table System |

lift | Compute the Top Decile Lift and Plot the Lift Curve |

liftLRD | Wavelet Lifting Estimators of the Hurst Exponent for Regularly and Irregularly Sampled Time Series |

liftr | Containerize R Markdown Documents for Continuous Reproducibility |

liger | Lightweight Iterative Geneset Enrichment |

LightningR | Tools for Communication with Lightning-Viz Server |

lightsout | Implementation of the 'Lights Out' Puzzle Game |

LIHNPSD | Poisson Subordinated Distribution |

likelihood | Methods for Maximum Likelihood Estimation |

likelihoodAsy | Functions for Likelihood Asymptotics |

likelihoodExplore | Likelihood Exploration |

likeLTD | Tools to Evaluate DNA Profile Evidence |

likert | Analysis and Visualization Likert Items |

LIM | Linear Inverse Model examples and solution methods |

lime | Local Interpretable Model-Agnostic Explanations |

limitplot | Jitter/CI Plot with Ordered Points Below the Limit of Detection |

limSolve | Solving Linear Inverse Models |

linbin | Binning and Plotting of Linearly Referenced Data |

LinCal | Static Univariate Frequentist and Bayesian Linear Calibration |

LindenmayeR | Functions to Explore L-Systems (Lindenmayer Systems) |

lindia | Automated Linear Regression Diagnostic |

LindleyR | The Lindley Distribution and Its Modifications |

linear.tools | Manipulate Formulas and Evaluate Marginal Effects |

linearQ | Linear Algorithm for Simulating Quantiles in Multiscale Change-Point Segmentation Problem |

LinearRegressionMDE | Minimum Distance Estimation in Linear Regression Model |

linemap | Line Maps |

linERR | Linear Excess Relative Risk Model |

lineup | Lining Up Two Sets of Measurements |

lingtypology | Linguistic Typology and Mapping |

link2GI | Linking Geographic Information Systems, Remote Sensing and Other Command Line Tools |

LinkageMapView | Plot Linkage Group Maps with Quantitative Trait Loci |

linkcomm | Tools for Generating, Visualizing, and Analysing Link Communities in Networks |

LinkedMatrix | Column-Linked and Row-Linked Matrices |

linkim | Linkage information based genotype imputation method |

linkR | 3D Lever and Linkage Mechanism Modeling |

linl | 'linl' is not 'Letter' |

linLIR | linear Likelihood-based Imprecise Regression |

linpk | Generate Concentration-Time Profiles from Linear PK Systems |

linprog | Linear Programming / Optimization |

LinRegInteractive | Interactive Interpretation of Linear Regression Models |

LINselect | Selection of Linear Estimators |

lintools | Manipulation of Linear Systems of (in)Equalities |

lintr | A 'Linter' for R Code |

LipidMS | Lipid Annotation for LC-MS/MS using Data Independent Acquisition |

liqueueR | Implements Queue, PriorityQueue and Stack Classes |

liquidSVM | A Fast and Versatile SVM Package |

lira | LInear Regression in Astronomy |

lisp | List-processing Ã la SRFI-1 |

lisrelToR | Import output from LISREL into R |

list | Statistical Methods for the Item Count Technique and List Experiment |

listarrays | A Toolbox for Working with R Arrays in a Functional Programming Style |

listdtr | List-Based Rules for Dynamic Treatment Regimes |

listenv | Environments Behaving (Almost) as Lists |

LIStest | Tests of independence based on the Longest Increasing Subsequence |

listless | Convert Lists to Tidy Data Frames |

listviewer | 'htmlwidget' for Interactive Views of R Lists |

listWithDefaults | List with Defaults |

liteq | Lightweight Portable Message Queue Using 'SQLite' |

littler | R at the Command-Line via 'r' |

liureg | Liu Regression with Liu Biasing Parameters and Statistics |

live | Local Interpretable (Model-Agnostic) Visual Explanations |

livechatR | R Wrapper for LiveChat REST API |

ljr | Logistic Joinpoint Regression |

llama | Leveraging Learning to Automatically Manage Algorithms |

lle | Locally linear embedding |

lllcrc | Local Log-linear Models for Capture-Recapture |

LLM | Logit Leaf Model Classifier for Binary Classification |

llogistic | The L-Logistic Distribution |

LLSR | Data Analysis of Liquid-Liquid Systems |

lm.beta | Add Standardized Regression Coefficients to lm-Objects |

lm.br | Linear Model with Breakpoint |

lme4 | Linear Mixed-Effects Models using 'Eigen' and S4 |

lmec | Linear Mixed-Effects Models with Censored Responses |

lmem.qtler | Linear Mixed Effects Models for QTL Mapping for Multienvironment and Multitrait Analysis |

lmeNB | Compute the Personalized Activity Index Based on a Negative Binomial Model |

lmeNBBayes | Compute the Personalized Activity Index Based on a Flexible Bayesian Negative Binomial Model |

lmenssp | Linear Mixed Effects Models with Non-Stationary Stochastic Processes |

LMERConvenienceFunctions | Model Selection and Post-hoc Analysis for (G)LMER Models |

lmeresampler | Bootstrap Methods for Nested Linear Mixed-Effects Models |

lmerTest | Tests in Linear Mixed Effects Models |

lmeSplines | Add smoothing spline modelling capability to nlme |

LMest | Latent Markov Models with and without Covariates |

lmeVarComp | Testing for a Subset of Variance Components in Linear Mixed Models |

lmf | Functions for estimation and inference of selection in age-structured populations |

LMfilteR | Filter Methods for Parameter Estimation in Linear Regression Models |

lmfor | Functions for Forest Biometrics |

lmm | Linear Mixed Models |

lmmen | Linear Mixed Model Elastic Net |

lmmlasso | Linear mixed-effects models with Lasso |

lmmot | Multiple Ordinal Tobit (MOT) Model |

lmmpar | Parallel Linear Mixed Model |

lmms | Linear Mixed Effect Model Splines for Modelling and Analysis of Time Course Data |

lmodel2 | Model II Regression |

lmom | L-Moments |

lmomco | L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments, and Many Distributions |

Lmoments | L-Moments and Quantile Mixtures |

lmomPi | (Precipitation) Frequency Analysis and Variability with L-Moments from 'lmom' |

lmomRFA | Regional Frequency Analysis using L-Moments |

lmPerm | Permutation Tests for Linear Models |

lmQCM | An Algorithm for Gene Co-Expression Analysis |

lmridge | Linear Ridge Regression with Ridge Penalty and Ridge Statistics |

lmSubsets | Exact Variable-Subset Selection in Linear Regression |

lmSupport | Support for Linear Models |

lmtest | Testing Linear Regression Models |

lmvar | Linear Regression with Non-Constant Variances |

LN0SCIs | Simultaneous CIs for Ratios of Means of Log-Normal Populations with Zeros |

LncFinder | Long Non-Coding RNA Identification Based on Features of Sequence, EIIP and Secondary Structure |

LncMod | Predicting Modulator and Functional/Survival Analysis |

LncPath | Identifying the Pathways Regulated by LncRNA Sets of Interest |

LNIRT | LogNormal Response Time Item Response Theory Models |

loa | Lattice Options and Add-Ins |

LocalControl | Nonparametric Methods for Generating High Quality Comparative Effectiveness Evidence |

localgauss | Estimating Local Gaussian Parameters |

localsolver | R API to LocalSolver |

locfdr | Computes Local False Discovery Rates |

LocFDRPois | Functions for Performing Local FDR Estimation when Null and Alternative are Poisson |

locfit | Local Regression, Likelihood and Density Estimation |

locits | Test of Stationarity and Localized Autocovariance |

Lock5Data | Datasets for "Statistics: UnLocking the Power of Data" |

Lock5withR | Datasets for 'Statistics: Unlocking the Power of Data' |

locpol | Kernel Local Polynomial Regression |

loder | Dependency-Free Access to PNG Image Files |

lodGWAS | Genome-Wide Association Analysis of a Biomarker Accounting for Limit of Detection |

loe | Local Ordinal Embedding |

log4r | A simple logging system for R, based on log4j |

logbin | Relative Risk Regression Using the Log-Binomial Model |

LogConcDEAD | Log-Concave Density Estimation in Arbitrary Dimensions |

logconcens | Maximum likelihood estimation of a log-concave density based on censored data |

logcondens | Estimate a Log-Concave Probability Density from Iid Observations |

logcondens.mode | Compute MLE of Log-Concave Density on R with Fixed Mode, and Perform Inference for the Mode |

logcondiscr | Estimate a Log-Concave Probability Mass Function from Discrete i.i.d. Observations |

logging | R logging package |

loggit | Effortless Exception Logging |

loggle | Local Group Graphical Lasso Estimation |

logiBin | Binning Variables to Use in Logistic Regression |

LOGICOIL | LOGICOIL: multi-state prediction of coiled-coil oligomeric state |

LogicReg | Logic Regression |

logihist | Combined Graphs for Logistic Regression |

logistf | Firth's Bias-Reduced Logistic Regression |

logistic4p | Logistic Regression with Misclassification in Dependent Variables |

LogisticDx | Diagnostic Tests for Models with a Binomial Response |

logisticPCA | Binary Dimensionality Reduction |

logitchoice | Fitting l2-regularized logit choice models via generalized gradient descent |

LogitNet | Infer network based on binary arrays using regularized logistic regression |

logitnorm | Functions for the Logitnormal Distribution |

logKDE | Computing Log-Transformed Kernel Density Estimates for Positive Data |

loglognorm | Double log normal distribution functions |

logmult | Log-Multiplicative Models, Including Association Models |

logOfGamma | Natural Logarithms of the Gamma Function for Large Values |

LogrankA | Logrank Test for Aggregated Survival Data |

logspline | Routines for Logspline Density Estimation |

lokern | Kernel Regression Smoothing with Local or Global Plug-in Bandwidth |

lolR | Linear Optimal Low-Rank Projection |

lomb | Lomb-Scargle Periodogram |

longCatEDA | Package for Plotting Categorical Longitudinal and Time-Series Data |

longclust | Model-Based Clustering and Classification for Longitudinal Data |

longitudinal | Analysis of Multiple Time Course Data |

longitudinalData | Longitudinal Data |

longmemo | Statistics for Long-Memory Processes (Jan Beran) – Data and Functions |

longpower | Sample Size Calculations for Longitudinal Data |

longROC | Time-Dependent Prognostic Accuracy with Multiply Evaluated Bio Markers or Scores |

longRPart2 | Recursive Partitioning of Longitudinal Data |

longurl | Expand Short URLs |

loo | Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models |

lookupTable | Look-Up Tables using S4 |

loon | Interactive Statistical Data Visualization |

loop | loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology |

LoopAnalyst | A Collection of Tools to Conduct Levins' Loop Analysis |

loopr | Uses an Archive to Amend Previous Stages of a Pipe using Current Output |

lordif | Logistic Ordinal Regression Differential Item Functioning using IRT |

lorec | LOw Rand and sparsE Covariance matrix estimation |

lori | Low-Rank Interaction Contingency Tables |

LOST | Missing Morphometric Data Simulation and Estimation |

LotkasLaw | Runs Lotka's Law which is One of the Special Applications of Zipf's Law |

lowmemtkmeans | Low Memory Use Trimmed K-Means |

LowRankQP | Low Rank Quadratic Programming |

LowWAFOMNX | Low WAFOM Niederreiter-Xing Sequence |

LowWAFOMSobol | Low WAFOM Sobol Sequence |

lpbrim | LP-BRIM Bipartite Modularity |

lpc | Lassoed principal components for testing significance of features |

LPCM | Local Principal Curve Methods |

lpdensity | Local Polynomial Density Estimation and Inference |

LPGraph | Nonparametric Smoothing of Laplacian Graph Spectra |

lpint | Local polynomial estimators of intensity function or its derivatives |

lpirfs | Local Projections Impulse Response Functions |

LPKsample | LP Nonparametric High Dimension K-Sample Comparison |

lplyr | 'dplyr' Verbs for Lists and Other Verbs for Data Frames |

LPM | Linear Parametric Models Applied to Hydrological Series |

lpme | Nonparametric Estimation of Measurement Error Models |

LPmerge | Merging Linkage Maps by Linear Programming |

lpmodeler | Modeler for linear programs (LP) and mixed integer linear programs (MILP) |

LPower | Calculates Power, Sample Size, or Detectable Effect for Longitudinal Analyses |

LPR | Lasso and Partial Ridge |

lpridge | Local Polynomial (Ridge) Regression |

LPS | Linear Predictor Score, for Binary Inference from Multiple Continuous Variables |

lpSolve | Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs |

lpSolveAPI | R Interface to 'lp_solve' Version 5.5.2.0 |

LPStimeSeries | Learned Pattern Similarity and Representation for Time Series |

LPTime | LP Nonparametric Approach to Non-Gaussian Non-Linear Time Series Modelling |

LPWC | Lag Penalized Weighted Correlation for Time Series Clustering |

lqa | Penalized Likelihood Inference for GLMs |

lqmm | Linear Quantile Mixed Models |

lqr | Robust Linear Quantile Regression |

LRcontrast | Dose Response Signal Detection under Model Uncertainty |

lrequire | Sources an R "Module" with Caching & Encapsulation, Returning Exported Vars |

lrgs | Linear Regression by Gibbs Sampling |

lrmest | Different Types of Estimators to Deal with Multicollinearity |

LRTH | A Likelihood Ratio Test Accounting for Genetic Heterogeneity |

LS2W | Locally Stationary Two-Dimensional Wavelet Process Estimation Scheme |

LS2Wstat | A Multiscale Test of Spatial Stationarity for LS2W Processes |

lsa | Latent Semantic Analysis |

LSAfun | Applied Latent Semantic Analysis (LSA) Functions |

LSAmitR | Daten, Beispiele und Funktionen zu 'Large-Scale Assessment mit R' |

lsasim | Functions to Facilitate the Simulation of Large Scale Assessment Data |

lsbclust | Least-Squares Bilinear Clustering for Three-Way Data |

LSC | Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data |

LSD | Lots of Superior Depictions |

LSDinterface | Reading LSD Results (.res) Files |

LSDsensitivity | Sensitivity Analysis Tools for LSD |

lsdv | Least square dummy variable regression |

lsei | Solving Least Squares or Quadratic Programming Problems under Equality/Inequality Constraints |

lshorth | The Length of the Shorth |

lsl | Latent Structure Learning |

lslx | Semi-Confirmatory Structural Equation Modeling via Penalized Likelihood |

lsm | Estimation of the log Likelihood of the Saturated Model |

lsmeans | Least-Squares Means |

LSMonteCarlo | American options pricing with Least Squares Monte Carlo method |

lspartition | Nonparametric Estimation and Inference Procedures using Partitioning-Based Least Squares Regression |

LSPFP | Lysate and Secretome Peptide Feature Plotter |

lspline | Linear Splines with Convenient Parametrisations |

lspls | LS-PLS Models |

lsplsGlm | Classification using LS-PLS for Logistic Regression |

lsr | Companion to "Learning Statistics with R" |

LSRS | Land Surface Remote Sensing |

lss | the accelerated failure time model to right censored data based on least-squares principle |

LSTS | Locally Stationary Time Series |

ltbayes | Simulation-Based Bayesian Inference for Latent Traits of Item Response Models |

ltm | Latent Trait Models under IRT |

ltmle | Longitudinal Targeted Maximum Likelihood Estimation |

LTPDvar | LTPD and AOQL Plans for Acceptance Sampling Inspection by Variables |

LTR | Perform LTR analysis on microarray data |

LTRCtrees | Survival Trees to Fit Left-Truncated and Right-Censored and Interval-Censored Survival Data |

ltsa | Linear Time Series Analysis |

ltsbase | Ridge and Liu Estimates based on LTS (Least Trimmed Squares) Method |

ltsk | Local Time Space Kriging |

ltxsparklines | Lightweight Sparklines for a LaTeX Document |

lubridate | Make Dealing with Dates a Little Easier |

luca | Likelihood inference from case-control data Under Covariate Assumptions (LUCA) |

lucid | Printing Floating Point Numbers in a Human-Friendly Format |

lucr | Currency Formatting and Conversion |

ludic | Linkage Using Diagnosis Codes |

lue | Light Use Efficiency Model to Estimate Biomass and YIELD with and Without Vapour Pressure Deficit |

lulcc | Land Use Change Modelling in R |

lumberjack | Track Changes in Data |

Luminescence | Comprehensive Luminescence Dating Data Analysis |

LumReader | TL/OSL Reader Simulator |

lunar | Lunar Phase & Distance, Seasons and Other Environmental Factors |

lutz | Look Up Time Zones of Point Coordinates |

luzlogr | Lightweight Logging for R Scripts |

lvec | Out of Memory Vectors |

lvm4net | Latent Variable Models for Networks |

lvnet | Latent Variable Network Modeling |

lvplot | Letter Value 'Boxplots' |

LW1949 | An Automated Approach to Evaluating Dose-Effect Experiments Following Litchfield and Wilcoxon (1949) |

lwgeom | Bindings to Selected 'liblwgeom' Functions for Simple Features |

lxb | Fast LXB File Reader |

lymphclon | Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates |

LZeroSpikeInference | Exact Spike Train Inference via L0 Optimization |

m2b | Movement to Behaviour Inference using Random Forest |

m2r | Macaulay2 in R |

M2SMF | Multi-Modal Similarity Matrix Factorization for Integrative Multi-Omics Data Analysis |

M3 | Reading M3 files |

maboost | Binary and Multiclass Boosting Algorithms |

MAc | Meta-Analysis with Correlations |

macc | Mediation Analysis of Causality under Confounding |

machina | Machina Time Series Generation and Backtesting |

machQA | QA Machina Indicators |

macleish | Retrieve Data from MacLeish Field Station |

MAclinical | Class prediction based on microarray data and clinical parameters |

MAd | Meta-Analysis with Mean Differences |

mada | Meta-Analysis of Diagnostic Accuracy |

maddison | Maddison Project Database |

maditr | Pipe-Style Interface for 'data.table' |

madness | Automatic Differentiation of Multivariate Operations |

MADPop | MHC Allele-Based Differencing Between Populations |

madr | Model Averaged Double Robust Estimation |

madrat | May All Data be Reproducible and Transparent (MADRaT) * |

mads | Multi-Analysis Distance Sampling |

madsim | A Flexible Microarray Data Simulation Model |

Maeswrap | Wrapper Functions for MAESTRA/MAESPA |

mafs | Multiple Automatic Forecast Selection |

magclass | Data Class and Tools for Handling Spatial-Temporal Data |

magic | Create and Investigate Magic Squares |

magicaxis | Pretty Scientific Plotting with Minor-Tick and Log Minor-Tick Support |

magicfor | Magic Functions to Obtain Results from for Loops |

magick | Advanced Graphics and Image-Processing in R |

magicLamp | 'WeMo Switch' Smart Plug Utilities |

MAGNAMWAR | A Pipeline for Meta-Genome Wide Association |

magree | Implements the O'Connell-Dobson-Schouten Estimators of Agreement for Multiple Observers |

magrittr | A Forward-Pipe Operator for R |

maGUI | A Graphical User Interface for Microarray Data Analysis and Annotation |

Sending Email Notifications from R | |

mailR | A Utility to Send Emails from R |

MAINT.Data | Model and Analyse Interval Data |

makedummies | Create Dummy Variables from Categorical Data |

MakefileR | Create 'Makefiles' Using R |

makeFlow | Visualizing Sequential Classifications |

makeProject | Creates an empty package framework for the LCFD format |

malani | Machine Learning Assisted Network Inference |

malariaAtlas | An R Interface to Open-Access Malaria Data, Hosted by the 'Malaria Atlas Project' |

MALDIquant | Quantitative Analysis of Mass Spectrometry Data |

MALDIquantForeign | Import/Export Routines for 'MALDIquant' |

MALDIrppa | MALDI Mass Spectrometry Data Robust Pre-Processing and Analysis |

mallet | A wrapper around the Java machine learning tool MALLET |

MAMS | Designing Multi-Arm Multi-Stage Studies |

MAMSE | Calculation of Minimum Averaged Mean Squared Error (MAMSE) Weights |

managelocalrepo | Manage a CRAN-Style Local Repository |

MANCIE | Matrix Analysis and Normalization by Concordant Information Enhancement |

mandelbrot | Generates Views on the Mandelbrot Set |

manet | Multiple Allocation Model for Actor-Event Networks |

mangoTraining | Mango Solutions Training Datasets |

Mangrove | Risk Prediction on Trees |

manhattanly | Interactive Q-Q and Manhattan Plots Using 'plotly.js' |

manifestoR | Access and Process Data and Documents of the Manifesto Project |

ManifoldOptim | An R Interface to the 'ROPTLIB' Library for Riemannian Manifold Optimization |

manipulate | Interactive Plots for RStudio |

manipulateWidget | Add Even More Interactivity to Interactive Charts |

ManlyMix | Manly Mixture Modeling and Model-Based Clustering |

MANOVA.RM | Analysis of Multivariate Data and Repeated Measures Designs |

ManyTests | Multiple Testing Procedures of Cox (2011) and Wong and Cox (2007) |

Map2NCBI | Mapping Markers to the Nearest Genomic Feature |

MAPA | Multiple Aggregation Prediction Algorithm |

mapdata | Extra Map Databases |

mapedit | Interactive Editing of Spatial Data in R |

mapfit | A Tool for PH/MAP Parameter Estimation |

mapfuser | Construct Consensus Genetic Maps and Estimate Recombination Rates |

MapGAM | Mapping Smoothed Effect Estimates from Individual-Level Data |

MAPLES | Smoothed age profile estimation |

mapmisc | Utilities for Producing Maps |

mapplots | Data Visualisation on Maps |

mapproj | Map Projections |

mapr | Visualize Species Occurrence Data |

mapReasy | Producing Administrative Boundary Map with Additional Features Embedded |

maps | Draw Geographical Maps |

mapsapi | 'sf'-Compatible Interface to 'Google Maps' APIs |

mapsRinteractive | Local Adaptation and Evaluation of Digital Soil Maps |

mapStats | Geographic Display of Survey Data Statistics |

maptools | Tools for Reading and Handling Spatial Objects |

maptpx | MAP Estimation of Topic Models |

maptree | Mapping, pruning, and graphing tree models |

mapview | Interactive Viewing of Spatial Data in R |

mAr | Multivariate AutoRegressive analysis |

MAR1 | Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data |

mar1s | Multiplicative AR(1) with Seasonal Processes |

march | Markov Chains |

marcher | Migration and Range Change Estimation in R |

marelac | Tools for Aquatic Sciences |

MareyMap | Estimation of Meiotic Recombination Rates Using Marey Maps |

marg | Approximate Marginal Inference for Regression-Scale Models |

MargCond | Joint Marginal-Conditional Model |

MarginalMediation | Marginal Mediation |

margins | Marginal Effects for Model Objects |

marima | Multivariate ARIMA and ARIMA-X Analysis |

marinespeed | Benchmark Data Sets and Functions for Marine Species Distribution Modelling |

markdown | 'Markdown' Rendering for R |

marked | Mark-Recapture Analysis for Survival and Abundance Estimation |

maRketSim | Market simulator for R |

markmyassignment | Automatic Marking of R Assignments |

markophylo | Markov Chain Models for Phylogenetic Trees |

markovchain | Easy Handling Discrete Time Markov Chains |

MarkowitzR | Statistical Significance of the Markowitz Portfolio |

marl | Multivariate Analysis Based on Relative Likelihoods |

marmap | Import, Plot and Analyze Bathymetric and Topographic Data |

marqLevAlg | An algorithm for least-squares curve fitting |

MARSS | Multivariate Autoregressive State-Space Modeling |

MARX | Simulation, Estimation, Model Selection and Forecasting for MARX Models |

maSAE | Mandallaz' Model-Assisted Small Area Estimators |

mase | Model-Assisted Survey Estimators |

MaskJointDensity | Masking, Unmasking and Restoring Confidential Data |

mason | Build Data Structures for Common Statistical Analysis |

MASS | Support Functions and Datasets for Venables and Ripley's MASS |

Massign | Simple Matrix Construction |

MASSTIMATE | Body Mass Estimation Equations for Vertebrates |

MasterBayes | ML and MCMC Methods for Pedigree Reconstruction and Analysis |

MAT | Multidimensional Adaptive Testing |

MATA | Model-Averaged Tail Area Wald (MATA-Wald) Confidence Interval |

matchbook | Wrapper for the 'Matchbook' API |

Matching | Multivariate and Propensity Score Matching with Balance Optimization |

MatchingFrontier | Computation of the Balance - Sample Size Frontier in Matching Methods for Causal Inference |

matchingMarkets | Analysis of Stable Matchings |

matchingR | Matching Algorithms in R and C++ |

MatchIt | Nonparametric Preprocessing for Parametric Causal Inference |

MatchItSE | Calculates SE for Matched Samples from 'MatchIt' |

MatchLinReg | Combining Matching and Linear Regression for Causal Inference |

matchMulti | Optimal Multilevel Matching using a Network Algorithm |

matconv | A Code Converter from the Matlab/Octave Language to R |

mateable | Tools to Assess Mating Potential in Space and Time |

mathpix | Support for the 'Mathpix' API (Image to 'LaTeX') |

matie | Measuring Association and Testing Independence Efficiently |

matlab | MATLAB emulation package |

matlabr | An Interface for MATLAB using System Calls |

matlib | Matrix Functions for Teaching and Learning Linear Algebra and Multivariate Statistics |

MatManlyMix | Matrix Clustering with Gaussian and Manly Mixture Models |

matpow | matrix powers |

matR | Metagenomics Analysis Tools |

Matrix | Sparse and Dense Matrix Classes and Methods |

Matrix.utils | Data.frame-Like Operations on Sparse and Dense Matrix Objects |

matrixcalc | Collection of functions for matrix calculations |

MatrixCorrelation | Matrix Correlation Coefficients |

MatrixEQTL | Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations |

matrixLaplacian | Normalized Laplacian Matrix and Laplacian Map |

MatrixLDA | Penalized Matrix-Normal Linear Discriminant Analysis |

MatrixModels | Modelling with Sparse And Dense Matrices |

matrixpls | Matrix-Based Partial Least Squares Estimation |

matrixsampling | Simulations of Matrix Variate Distributions |

matrixStats | Functions that Apply to Rows and Columns of Matrices (and to Vectors) |

matrixTests | Fast Statistical Hypothesis Tests on Rows and Columns of Matrices |

MATTOOLS | Modern Calibration Functions for the Modern Analog Technique (MAT) |

mau | Decision Models with Multi Attribute Utility Theory |

MAVE | Methods for Dimension Reduction |

MAVIS | Meta Analysis via Shiny |

MAVTgsa | Three methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest |

MaXact | Exact max-type Cochran-Armitage trend test(CATT) |

maxadjAUC | Maximizing the Adjusted AUC |

maxent | Low-memory Multinomial Logistic Regression with Support for Text Classification |

MaxentVariableSelection | Selecting the Best Set of Relevant Environmental Variables along with the Optimal Regularization Multiplier for Maxent Niche Modeling |

maxLik | Maximum Likelihood Estimation and Related Tools |

maxlike | Model Species Distributions by Estimating the Probability of Occurrence Using Presence-Only Data |

maxmatching | Maximum Matching for General Weighted Graph |

maxnet | Fitting 'Maxent' Species Distribution Models with 'glmnet' |

MaxPro | Maximum Projection Designs |

MaxSkew | Orthogonal Data Projections with Maximal Skewness |

maxstat | Maximally Selected Rank Statistics |

maxTPR | Maximizing the TPR for a Specified FPR |

MazamaSpatialUtils | Spatial Data Download and Utility Functions |

MazamaWebUtils | Utility Functions for Building Web Databrowsers |

mazealls | Generate Recursive Mazes |

mazeGen | Elithorn Maze Generator |

mazeinda | Monotonic Association on Zero-Inflated Data |

MBA | Multilevel B-Spline Approximation |

mbbefd | Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and Destruction Rate Modelling |

MBC | Multivariate Bias Correction of Climate Model Outputs |

MBCluster.Seq | Model-Based Clustering for RNA-seq Data |

mbclusterwise | Clusterwise Multiblock Analyses |

MBESS | The MBESS R Package |

mbest | Moment-Based Estimation for Hierarchical Models |

mbgraphic | Measure Based Graphic Selection |

MBHdesign | Spatial Designs for Ecological and Environmental Surveys |

MBI | (M)ultiple-site (B)iodiversity (I)ndices Calculator |

mbir | Magnitude-Based Inferences |

mblm | Median-Based Linear Models |

MBmca | Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R |

mbmdr | Model Based Multifactor Dimensionality Reduction |

mboost | Model-Based Boosting |

mbrglm | Median Bias Reduction in Binomial-Response GLMs |

MBSGS | Multivariate Bayesian Sparse Group Selection with Spike and Slab |

MBSP | Multivariate Bayesian Model with Shrinkage Priors |

MBTAr | Access Data from the Massachusetts Bay Transit Authority (MBTA) Web API |

mBvs | Bayesian Variable Selection Methods for Multivariate Data |

mc2d | Tools for Two-Dimensional Monte-Carlo Simulations |

MC2toPath | Translates information from netcdf files with MC2 output into inter-PVT transitions |

MCAvariants | Multiple Correspondence Analysis Variants |

mcbiopi | Matrix Computation Based Identification Of Prime Implicants |

mcc | Moment Corrected Correlation |

mcca | Multi-Category Classification Accuracy |

mcclust | Process an MCMC Sample of Clusterings |

mccr | The Matthews Correlation Coefficient |

MCDA | Functions to Support the Multicriteria Decision Aiding Process |

MCDM | Multi-Criteria Decision Making Methods for Crisp Data |

mcemGLM | Maximum Likelihood Estimation for Generalized Linear Mixed Models |

mcen | Multivariate Cluster Elastic Net |

mcga | Machine Coded Genetic Algorithms for Real-Valued Optimization Problems |

mcgibbsit | Warnes and Raftery's MCGibbsit MCMC diagnostic |

mcglm | Multivariate Covariance Generalized Linear Models |

mcGlobaloptim | Global optimization using Monte Carlo and Quasi Monte Carlo simulation |

mcheatmaps | Multiple matrices heatmap visualization |

MCI | Multiplicative Competitive Interaction (MCI) Model |

MCL | Markov Cluster Algorithm |

mclcar | Estimating Conditional Auto-Regressive (CAR) Models using Monte Carlo Likelihood Methods |

mcll | Monte Carlo Local Likelihood Estimation |

mclogit | Mixed Conditional Logit Models |

mclust | Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation |

mclustcomp | Measures for Comparing Clusters |

mcmc | Markov Chain Monte Carlo |

MCMC.OTU | Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology |

MCMC.qpcr | Bayesian Analysis of qRT-PCR Data |

MCMC4Extremes | Posterior Distribution of Extreme Value Models in R |

MCMCglmm | MCMC Generalised Linear Mixed Models |

MCMCpack | Markov Chain Monte Carlo (MCMC) Package |

mcmcplots | Create Plots from MCMC Output |

MCMCprecision | Precision of Discrete Parameters in Transdimensional MCMC |

mcmcr | Manipulate MCMC Samples |

mcmcse | Monte Carlo Standard Errors for MCMC |

MCMCvis | Tools to Visualize, Manipulate, and Summarize MCMC Output |

mcMST | A Toolbox for the Multi-Criteria Minimum Spanning Tree Problem |

mco | Multiple Criteria Optimization Algorithms and Related Functions |

Mcomp | Data from the M-Competitions |

mcompanion | Objects and Methods for Multi-Companion Matrices |

MConjoint | Conjoint Analysis through Averaging of Multiple Analyses |

mcPAFit | Estimating Preferential Attachment from a Single Network Snapshot by Markov Chain Monte Carlo |

MCPAN | Multiple Comparisons Using Normal Approximation |

mcparallelDo | A Simplified Interface for Running Commands on Parallel Processes |

MCPerm | A Monte Carlo permutation method for multiple test correlation |

MCPMod | Design and Analysis of Dose-Finding Studies |

mcprofile | Testing Generalized Linear Hypotheses for Generalized Linear Model Parameters by Profile Deviance |

mcr | Method Comparison Regression |

MCS | Model Confidence Set Procedure |

mcsm | Functions for Monte Carlo Methods with R |

McSpatial | Nonparametric spatial data analysis |

mctest | Multicollinearity Diagnostic Measures |

MCTM | Markov Chains Transition Matrices |

md | Selecting Bandwidth for Kernel Density Estimator with Minimum Distance Method |

md.log | Produces Markdown Log File with a Built-in Function Call |

mda | Mixture and Flexible Discriminant Analysis |

mdatools | Multivariate Data Analysis for Chemometrics |

mded | Measuring the Difference Between Two Empirical Distributions |

mdendro | Variable-Group Methods for Agglomerative Hierarchical Clustering |

MDFS | MultiDimensional Feature Selection |

mdftracks | Read and Write 'MTrackJ Data Files' |

MDimNormn | Multi-Dimensional MA Normalization for Plate Effect |

MDM | Multinomial Diversity Model |

mdmb | Model Based Treatment of Missing Data |

MDMR | Multivariate Distance Matrix Regression |

mdpeer | Graph-Constrained Regression with Enhanced Regularization Parameters Selection |

MDplot | Visualising Molecular Dynamics Analyses |

MDPtoolbox | Markov Decision Processes Toolbox |

mds | Medical Devices Surveillance |

mdscore | Improved Score Tests for Generalized Linear Models |

mdsdt | Functions for Analysis of Data with General Recognition Theory |

MDSGUI | A GUI for interactive MDS in R |

MDSMap | High Density Genetic Linkage Mapping using Multidimensional Scaling |

mdsOpt | Searching for Optimal MDS Procedure for Metric and Interval-Valued Symbolic Data |

mdsr | Complement to 'Modern Data Science with R' |

mdsstat | Statistical Trending for Medical Devices Surveillance |

mdw | Maximum Diversity Weighting |

meanr | Sentiment Analysis Scorer |

MeanShift | Clustering via the Mean Shift Algorithm |

meanShiftR | A Computationally Efficient Mean Shift Implementation |

meaRtools | Micro-Electro Array (MEA) Analysis |

measurements | Tools for Units of Measurement |

measures | Performance Measures for Statistical Learning |

measuRing | Detection and Control of Tree-Ring Widths on Scanned Image Sections |

meboot | Maximum Entropy Bootstrap for Time Series |

MEclustnet | Fitting the Mixture of Experts Latent Position Cluster Model to Network Data |

MED | Mediation by Tilted Balancing |

MedDietCalc | Multi Calculator to Compute Scores of Adherence to Mediterranean Diet |

mederrRank | Bayesian Methods for Identifying the Most Harmful Medication Errors |

medfate | Mediterranean Forest Simulation |

medflex | Flexible Mediation Analysis Using Natural Effect Models |

MediaK | Calculate MeDiA_K Distance |

Mediana | Clinical Trial Simulations |

mediation | Causal Mediation Analysis |

medicalrisk | Medical Risk and Comorbidity Tools for ICD-9-CM Data |

medicare | Tools for Obtaining and Cleaning Medicare Public Use Files |

medmod | Simple Mediation and Moderation Analysis |

MedOr | Median Ordering Statistical R package |

MEET | MEET: Motif Elements Estimation Toolkit |

meetupapi | Access 'Meetup' API |

mefa | Multivariate Data Handling in Ecology and Biogeography |

mefa4 | Multivariate Data Handling with S4 Classes and Sparse Matrices |

Mega2R | Accessing and Processing a 'Mega2' Genetic Database |

meifly | Interactive model exploration using GGobi |

mekko | Variable Width Bar Charts: Bar Mekko |

meltt | Matching Event Data by Location, Time and Type |

melviewr | View and Classify MELODIC Output for ICA+FIX |

mem | The Moving Epidemic Method |

memapp | The Moving Epidemic Method Web Application |

meme | Create Meme |

memery | Internet Memes for Data Analysts |

memgene | Spatial pattern detection in genetic distance data using Moran's Eigenvector Maps |

memisc | Management of Survey Data and Presentation of Analysis Results |

memo | In-Memory Caching for Repeated Computations |

memoise | Memoisation of Functions |

memor | A 'rmarkdown' Template that Can be Highly Customized |

MEMSS | Data sets from Mixed-effects Models in S |

memuse | Memory Estimation Utilities |

MendelianRandomization | Mendelian Randomization Package |

MenuCollection | Collection of Configurable GTK+ Menus |

MEPDF | Multivariate Empirical Density Function |

merDeriv | Case-Wise and Cluster-Wise Derivatives for Mixed Effects Models |

MergeGUI | A GUI for Merging Datasets in R |

merror | Accuracy and Precision of Measurements |

merTools | Tools for Analyzing Mixed Effect Regression Models |

MESS | Miscellaneous Esoteric Statistical Scripts |

messaging | Conveniently Issue Messages, Warnings, and Errors |

meta | General Package for Meta-Analysis |

meta4diag | Meta-Analysis for Diagnostic Test Studies |

MetaAnalyser | An Interactive Visualisation of Meta-Analysis as a Physical Weighing Machine |

MetABEL | Meta-analysis of genome-wide SNP association results |

metaBLUE | BLUE for Combining Location and Scale Information in a Meta-Analysis |

metaBMA | Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis |

metaboGSE | Gene Set Enrichment Analysis via Integration of Metabolic Networks and RNA-Seq Data |

MetabolAnalyze | Probabilistic latent variable models for metabolomic data |

MetaboList | Annotation of Metabolites from Liquid Chromatography-Mass Spectrometry Data |

metabolomics | Analysis of Metabolomics Data |

MetabolomicsBasics | Basic Functions to Investigate Metabolomics Data Matrices |

MetaboQC | Normalize Metabolomic Data using QC Signal |

metacart | Meta-CART: A Flexible Approach to Identify Moderators in Meta-Analysis |

metacoder | Tools for Parsing, Manipulating, and Graphing Taxonomic Abundance Data |

metacom | Analysis of the 'Elements of Metacommunity Structure' |

MetaComp | EDGE Taxonomy Assignments Visualization |

metacor | Meta-analysis of correlation coefficients |

MetaCycle | Evaluate Periodicity in Large Scale Data |

metafolio | Metapopulation simulations for conserving salmon through portfolio optimization |

metafor | Meta-Analysis Package for R |

metaforest | Exploring Heterogeneity in Meta-Analysis using Random Forests |

metafuse | Fused Lasso Approach in Regression Coefficient Clustering |

metagear | Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis |

metagen | Inference in Meta Analysis and Meta Regression |

metaheur | Metaheuristic Optimization Framework for Preprocessing Combinations |

MetaheuristicFPA | An Implementation of Flower Pollination Algorithm in R |

metaheuristicOpt | Metaheuristic for Optimization |

MetaIntegrator | Meta-Analysis of Gene Expression Data |

MetaLandSim | Landscape and Range Expansion Simulation |

metaLik | Likelihood Inference in Meta-Analysis and Meta-Regression Models |

MetaLonDA | Metagenomics Longitudinal Differential Abundance Method |

metaMA | Meta-analysis for MicroArrays |

MetamapsDB | Network Analysis of Metabolic Pathways and Gene Based Assemblies in Metagenomics |

metamisc | Diagnostic and Prognostic Meta-Analysis |

metaMix | Bayesian Mixture Analysis for Metagenomic Community Profiling |

metansue | Meta-Analysis of Studies with Non Statistically-Significant Unreported Effects |

metap | Meta-Analysis of Significance Values |

MetaPath | Perform the Meta-Analysis for Pathway Enrichment Analysis (MAPE) |

MetaPCA | MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data |

metaplot | Data-Driven Diagnostic Plots |

metaplotr | Creates CrossHairs Plots for Meta-Analyses |

metaplus | Robust Meta-Analysis and Meta-Regression |

MetaQC | MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis |

metaRNASeq | Meta-analysis of RNA-seq data |

metaSEM | Meta-Analysis using Structural Equation Modeling |

metasens | Advanced Statistical Methods to Model and Adjust for Bias in Meta-Analysis |

MetaSKAT | Meta Analysis for SNP-Set (Sequence) Kernel Association Test |

MetaSubtract | Subtracting Summary Statistics of One or more Cohorts from Meta-GWAS Results |

metatest | Fit and test metaregression models |

Metatron | Meta-analysis for Classification Data and Correction to Imperfect Reference |

metavcov | Variance-Covariance Matrix for Multivariate Meta-Analysis |

metaviz | Forest Plots, Funnel Plots, and Visual Funnel Plot Inference for Meta-Analysis |

meteo | Spatio-Temporal Analysis and Mapping of Meteorological Observations |

meteoForecast | Numerical Weather Predictions |

meteogRam | Tools for plotting meteograms |

meteoland | Landscape Meteorology Tools |

meteR | Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE) |

MetFns | Analysis of Visual Meteor Data |

Meth27QC | Meth27QC: sample quality analysis, and sample control analysis |

MethComp | Functions for Analysis of Agreement in Method Comparison Studies |

MethodCompare | Bias and Precision Plots to Compare Two Measurements with Possibly Heteroscedastic Measurement Errors |

Methplot | Visualize the methylation patterns |

MethylCapSig | Detection of Differentially Methylated Regions using MethylCap-Seq Data |

MetNorm | Statistical Methods for Normalizing Metabolomics Data |

MetProc | Separate Metabolites into Likely Measurement Artifacts and True Metabolites |

Metrics | Evaluation Metrics for Machine Learning |

metricsgraphics | Create Interactive Charts with the JavaScript 'MetricsGraphics' Library |

metricTester | Test Metric and Null Model Statistical Performance |

metRology | Support for Metrological Applications |

mets | Analysis of Multivariate Event Times |

metScanR | Find, Map, and Gather Environmental Data and Metadata |

MetSizeR | GUI Tool for Estimating Sample Sizes for Metabolomic Experiments |

MetStaT | Statistical metabolomics tools |

mev | Multivariate Extreme Value Distributions |

mewAvg | A Fixed Memeory Moving Expanding Window Average |

mexhaz | Mixed Effect Excess Hazard Models |

mExplorer | Identifying Master Gene Regulators from Gene Expression and DNA-Binding Data |

MExPosition | Multi-table ExPosition |

MF | Mitigated Fraction |

MFAg | Multiple Factor Analysis (MFA) |

MFDFA | MultiFractal Detrended Fluctuation Analysis |

mfe | Meta-Feature Extractor |

mfGARCH | Mixed-Frequency GARCH Models |

MFHD | Multivariate Functional Halfspace Depth |

mFilter | Miscellaneous time series filters |

MFKnockoffs | Model-Free Knockoff Filter for Controlled Variable Selection |

mfp | Multivariable Fractional Polynomials |

MFPCA | Multivariate Functional Principal Component Analysis for Data Observed on Different Dimensional Domains |

MFT | The Multiple Filter Test for Change Point Detection |

MfUSampler | Multivariate-from-Univariate (MfU) MCMC Sampler |

mfx | Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs |

mgarchBEKK | Simulating, Estimating and Diagnosing MGARCH (BEKK and mGJR) Processes |

mgc | Multiscale Graph Correlation |

mgcv | Mixed GAM Computation Vehicle with Automatic Smoothness Estimation |

mgcViz | Visualisations for Generalized Additive Models |

MGL | Module Graphical Lasso |

MGLM | Multivariate Response Generalized Linear Models |

mglmn | Model Averaging for Multivariate GLM with Null Models |

mglR | Master Gene List |

mgm | Estimating Time-Varying k-Order Mixed Graphical Models |

mgpd | mgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II) |

mgraph | Graphing map attributes and non-map variables in R |

MGRASTer | API Client for the MG-RAST Server of the US DOE KBase |

MGSDA | Multi-Group Sparse Discriminant Analysis |

mgsub | Safe, Multiple, Simultaneous String Substitution |

mGSZ | Gene set analysis based on GSZ-scoring function and asymptotic p-value |

mgwrsar | GWR and MGWR with Spatial Autocorrelation |

MHadaptive | General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling |

MHCtools | Analysis of MHC Data in Non-Model Species |

mhde | Minimum Hellinger Distance Test for Normality |

mHG | Minimum-Hypergeometric Test |

mhsmm | Inference for Hidden Markov and Semi-Markov Models |

mht | Multiple Hypothesis Testing for Variable Selection in High-Dimensional Linear Models |

mhtboot | Multiple Hypothesis Test Based on Distribution of p Values |

MHTcop | Tests Controlling the FDR / FWER under Certain Copula Models |

MHTdiscrete | Multiple Hypotheses Testing for Discrete Data |

MHTmult | Multiple Hypotheses Testing for Multiple Families/Groups Structure |

MHTrajectoryR | Bayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions |

mi | Missing Data Imputation and Model Checking |

MIAmaxent | Maxent Distribution Model Selection |

mice | Multivariate Imputation by Chained Equations |

miceadds | Some Additional Multiple Imputation Functions, Especially for 'mice' |

micEcon | Microeconomic Analysis and Modelling |

micEconAids | Demand Analysis with the Almost Ideal Demand System (AIDS) |

micEconCES | Analysis with the Constant Elasticity of Substitution (CES) function |

micEconIndex | Price and Quantity Indices |

micEconSNQP | Symmetric Normalized Quadratic Profit Function |

miceExt | Extension Package to 'mice' |

miceFast | Fast Imputations Using 'Rcpp' and 'Armadillo' |

micemd | Multiple Imputation by Chained Equations with Multilevel Data |

miceMNAR | Missing not at Random Imputation Models for Multiple Imputation by Chained Equation |

micompr | Multivariate Independent Comparison of Observations |

miCoPTCM | Promotion Time Cure Model with Mis-Measured Covariates |

microbats | An Implementation of Bat Algorithm in R |

microbenchmark | Accurate Timing Functions |

microclass | Methods for Taxonomic Classification of Prokaryotes |

microcontax | The ConTax Data Package |

MicroDatosEs | Utilities for Official Spanish Microdata |

microdemic | 'Microsoft Academic' API Client |

MicroMacroMultilevel | Micro-Macro Multilevel Modeling |

micromap | Linked Micromap Plots |

micromapST | Linked Micromap Plots for General U. S. and Other Geographic Areas |

micropan | Microbial Pan-Genome Analysis |

microplot | Microplots (Sparklines) in 'LaTeX', 'Word', 'HTML', 'Excel' |

microPop | Modelling Microbial Populations |

microsamplingDesign | Finding Optimal Microsampling Designs for Non-Compartmental Pharmacokinetic Analysis |

microseq | Basic Biological Sequence Handling |

MicroStrategyR | MicroStrategyR Package |

microsynth | Synthetic Control Methods with Micro- And Meso-Level Data |

MicSim | Performing Continuous-Time Microsimulation |

midas | Turn HTML 'Shiny' |

midasr | Mixed Data Sampling Regression |

midastouch | Multiple Imputation by Distance Aided Donor Selection |

MIDN | Nearly Exact Sample Size Calculation for Exact Powerful Nonrandomized Tests for Differences Between Binomial Proportions |

midrangeMCP | Multiple Comparisons Procedures Based on Studentized Midrange and Range Distributions |

MigClim | Implementing dispersal into species distribution models |

migest | Methods for the Indirect Estimation of Bilateral Migration |

migration.indices | Migration indices |

migui | Graphical User Interface to the 'mi' Package |

miic | Learning Causal or Non-Causal Graphical Models Using Information Theory |

MIICD | Multiple Imputation for Interval Censored Data |

MIIVsem | Model Implied Instrumental Variable (MIIV) Estimation of Structural Equation Models |

MILC | MIcrosimulation Lung Cancer (MILC) model |

miLineage | Association Tests for Microbial Lineages on a Taxonomic Tree |

milr | Multiple-Instance Logistic Regression with LASSO Penalty |

mime | Map Filenames to MIME Types |

MImix | Mixture summary method for multiple imputation |

MindOnStats | Data sets included in Utts and Heckard's Mind on Statistics |

mindr | Convert Files Between Markdown or Rmarkdown Files and Mindmaps |

mineCitrus | Extract and Analyze Median Molecule Intensity from 'citrus' Output |

minerva | Maximal Information-Based Nonparametric Exploration for Variable Analysis |

Miney | Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix) |

miniCRAN | Create a Mini Version of CRAN Containing Only Selected Packages |

miniGUI | Tcl/Tk Quick and Simple Function GUI |

minimalRSD | Minimally Changed CCD and BBD |

minimap | Create Tile Grid Maps |

minimax | Minimax distribution family |

minimaxdesign | Minimax and Minimax Projection Designs |

minimist | Parse Argument Options |

miniUI | Shiny UI Widgets for Small Screens |

minpack.lm | R Interface to the Levenberg-Marquardt Nonlinear Least-Squares Algorithm Found in MINPACK, Plus Support for Bounds |

minPtest | Gene region-level testing procedure for SNP data, using the min P test resampling approach |

minqa | Derivative-free optimization algorithms by quadratic approximation |

minque | An R Package for Linear Mixed Model Analyses |

MInt | Learn Direct Interaction Networks |

minval | MINimal VALidation for Stoichiometric Reactions |

minxent | Entropy Optimization Distributions |

mipfp | Multidimensional Iterative Proportional Fitting and Alternative Models |

MIPHENO | Mutant Identification through Probabilistic High throughput Enabled NOrmalization |

miRada | MicroRNA Microarray Data Analysis |

MiRAnorm | Adaptive Normalization for miRNA Data |

MiRKAT | Microbiome Regression-Based Kernel Association Test |

MIRL | Multiple Imputation Random Lasso for Variable Selection with Missing Entries |

miRNAss | Genome-Wide Discovery of Pre-miRNAs with few Labeled Examples |

MiRSEA | 'MicroRNA' Set Enrichment Analysis |

mirt | Multidimensional Item Response Theory |

mirtCAT | Computerized Adaptive Testing with Multidimensional Item Response Theory |

miRtest | combined miRNA- and mRNA-testing |

misc3d | Miscellaneous 3D Plots |

miscF | Miscellaneous Functions |

miscFuncs | Miscellaneous Useful Functions Including LaTeX Tables, Kalman Filtering and Development Tools |

misclassGLM | Computation of Generalized Linear Models with Misclassified Covariates Using Side Information |

miscor | Miscellaneous Functions for the Correlation Coefficient |

miscset | Miscellaneous Tools Set |

miscTools | Miscellaneous Tools and Utilities |

mise | Clears the Workspace (Mise en Place) |

Miso | Multi-Isotope Labeling for Metabolomics Analysis |

mispr | Multiple Imputation with Sequential Penalized Regression |

MiSPU | Microbiome Based Sum of Powered Score (MiSPU) Tests |

misreport | Statistical Analysis of Misreporting on Sensitive Survey Questions |

missDeaths | Simulating and Analyzing Time to Event Data in the Presence of Population Mortality |

missForest | Nonparametric Missing Value Imputation using Random Forest |

MissingDataGUI | A GUI for Missing Data Exploration |

missMDA | Handling Missing Values with Multivariate Data Analysis |

MissMech | Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random |

missRanger | Fast Imputation of Missing Values |

MiST | Mixed effects Score Test for continuous outcomes |

mistat | Data Sets, Functions and Examples from the Book: "Modern Industrial Statistics" by Kenett, Zacks and Amberti |

mistral | Methods in Structural Reliability Analysis |

MitISEM | Mixture of Student t Distributions using Importance Sampling and Expectation Maximization |

mitml | Tools for Multiple Imputation in Multilevel Modeling |

mitools | Tools for multiple imputation of missing data |

MittagLeffleR | Mittag-Leffler Family of Distributions |

mix | Estimation/Multiple Imputation for Mixed Categorical and Continuous Data |

mixAK | Multivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering |

MixAll | Clustering and Classification using Model-Based Mixture Models |

mixcat | Mixed effects cumulative link and logistic regression models |

mixdir | Cluster High Dimensional Categorical Datasets |

mixdist | Finite Mixture Distribution Models |

MixedDataImpute | Missing Data Imputation for Continuous and Categorical Data using Nonparametric Bayesian Joint Models |

mixedMem | Tools for Discrete Multivariate Mixed Membership Models |

MixedPoisson | Mixed Poisson Models |

MixedPsy | Statistical Tools for the Analysis of Psychophysical Data |

mixedsde | Estimation Methods for Stochastic Differential Mixed Effects Models |

MixedTS | Mixed Tempered Stable Distribution |

mixEMM | A Mixed-Effects Model for Analyzing Cluster-Level Non-Ignorable Missing Data |

mixexp | Design and Analysis of Mixture Experiments |

MIXFIM | Evaluation of the FIM in NLMEMs using MCMC |

MixfMRI | Mixture fMRI Clustering Analysis |

MixGHD | Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions |

mixKernel | Omics Data Integration Using Kernel Methods |

mixlink | Mixture Link Regression |

mixlm | Mixed Model ANOVA and Statistics for Education |

MixMAP | Implements the MixMAP Algorithm |

mixOmics | Omics Data Integration Project |

mixor | Mixed-Effects Ordinal Regression Analysis |

mixpack | Tools to Work with Mixture Components |

mixPHM | Mixtures of Proportional Hazard Models |

mixR | Finite Mixture Modeling for Raw and Binned Data |

mixRasch | Mixture Rasch Models with JMLE |

mixreg | Functions to Fit Mixtures of Regressions |

MixRF | A Random-Forest-Based Approach for Imputing Clustered Incomplete Data |

MixSAL | Mixtures of Multivariate Shifted Asymmetric Laplace (SAL) Distributions |

mixsep | Forensic Genetics DNA Mixture Separation |

MixSIAR | Bayesian Mixing Models in R |

MixSim | Simulating Data to Study Performance of Clustering Algorithms |

mixsmsn | Fitting Finite Mixture of Scale Mixture of Skew-Normal Distributions |

mixtNB | DE Analysis of RNA-Seq Data by Mixtures of NB |

mixtools | Tools for Analyzing Finite Mixture Models |

mixtox | Curve Fitting and Mixture Toxicity Assessment |

mixture | Finite Gaussian Mixture Models for Clustering and Classification |

MixtureInf | Inference for Finite Mixture Models |

MixtureRegLTIC | Mixture Regression Models for Left-Truncated and Interval-Censored Data |

mize | Unconstrained Numerical Optimization Algorithms |

mizer | Multi-Species sIZE Spectrum Modelling in R |

mkde | 2D and 3D movement-based kernel density estimates (MKDEs) |

mkin | Kinetic Evaluation of Chemical Degradation Data |

MKLE | Maximum kernel likelihood estimation |

MKmisc | Miscellaneous Functions from M. Kohl |

mknapsack | Multiple Knapsack Problem Solver |

mkssd | Efficient multi-level k-circulant supersaturated designs |

ML.MSBD | Maximum Likelihood Inference on Multi-State Trees |

mlapi | Abstract Classes for Building 'scikit-learn' Like API |

MlBayesOpt | Hyper Parameter Tuning for Machine Learning, Using Bayesian Optimization |

mlbench | Machine Learning Benchmark Problems |

mlbgameday | Tools to Gather Data from Major League Baseball Advanced Media (MLBAM) |

mlbstats | Major League Baseball Player Statistics Calculator |

MLCIRTwithin | Latent Class Item Response Theory (LC-IRT) Models under Within-Item Multidimensionality |

mlDNA | Machine Learning-based Differential Network Analysis of Transcriptome Data |

mldr | Exploratory Data Analysis and Manipulation of Multi-Label Data Sets |

mldr.datasets | R Ultimate Multilabel Dataset Repository |

MLDS | Maximum Likelihood Difference Scaling |

mle.tools | Expected/Observed Fisher Information and Bias-Corrected Maximum Likelihood Estimate(s) |

mleap | Interface to 'MLeap' |

mlearning | Machine learning algorithms with unified interface and confusion matrices |

MLEcens | Computation of the MLE for bivariate (interval) censored data |

mlegp | Maximum Likelihood Estimates of Gaussian Processes |

mleur | Maximum likelihood unit root test |

mlf | Machine Learning Foundations |

mlgt | Multi-Locus Geno-Typing |

mlica2 | Independent Component Analysis using Maximum Likelihood |

MLID | Multilevel Index of Dissimilarity |

mljar | R API for MLJAR |

mlma | Multilevel Mediation Analysis |

mlmc | Multi-Level Monte Carlo |

MLmetrics | Machine Learning Evaluation Metrics |

MLML2R | Maximum Likelihood Estimation of DNA Methylation and Hydroxymethylation Proportions |

mlmm.gwas | Pipeline for GWAS Using MLMM |

mlmmm | ML estimation under multivariate linear mixed models with missing values |

mlmRev | Examples from Multilevel Modelling Software Review |

mlogit | Multinomial Logit Models |

mlogitBMA | Bayesian Model Averaging for Multinomial Logit Models |

mlPhaser | Multi-Locus Haplotype Phasing |

MLPUGS | Multi-Label Prediction Using Gibbs Sampling (and Classifier Chains) |

mlr | Machine Learning in R |

mlrCPO | Composable Preprocessing Operators and Pipelines for Machine Learning |

mlrMBO | Bayesian Optimization and Model-Based Optimization of Expensive Black-Box Functions |

mlsjunkgen | Use the MLS Junk Generator Algorithm to Generate a Stream of Pseudo-Random Numbers |

mlt | Most Likely Transformations |

mlt.docreg | Most Likely Transformations: Documentation and Regression Tests |

mltools | Machine Learning Tools |

mlVAR | Multi-Level Vector Autoregression |

mlvocab | Vocabulary and Corpus Preprocessing for Natural Language Pipelines |

mlxR | Simulation of Longitudinal Data |

MLZ | Mean Length-Based Estimators of Mortality using TMB |

MM | The Multiplicative Multinomial Distribution |

MM2S | Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines |

MM2Sdata | Gene Expression Datasets for the 'MM2S' Package |

MM4LMM | Inference of Linear Mixed Models Through MM Algorithm |

mma | Multiple Mediation Analysis |

mmabig | Multiple Mediation Analysis for Big Data Sets |

MMAC | Data for Mathematical Modeling and Applied Calculus |

mmand | Mathematical Morphology in Any Number of Dimensions |

mmap | Map Pages of Memory |

mmapcharr | Memory-Map Character Files |

mmc | Multivariate Measurement Error Correction |

mmcm | Modified Maximum Contrast Method |

MMDai | Multivariate Multinomial Distribution Approximation and Imputation for Incomplete Data |

mmds | Mixture Model Distance Sampling (mmds) |

mmeln | Estimation of Multinormal Mixture Distribution |

mmeta | Multivariate Meta-Analysis |

MmgraphR | Graphing for Markov, Hidden Markov, and Mixture Transition Distribution Models |

mmm | an R package for analyzing multivariate longitudinal data with multivariate marginal models |

mmm2 | Multivariate marginal models with shared regression parameters |

mmmgee | Simultaneous Inference for Multiple Linear Contrasts in GEE Models |

MMMS | Multi-Marker Molecular Signature for Treatment-specific Subgroup Identification |

mmod | Modern Measures of Population Differentiation |

mMPA | Implementation of Marker-Assisted Mini-Pooling with Algorithm |

mmpf | Monte-Carlo Methods for Prediction Functions |

mmpp | Various Similarity and Distance Metrics for Marked Point Processes |

mmppr | Markov Modulated Poisson Process for Unsupervised Event Detection in Time Series of Counts |

MMPPsampler | Efficient Gibbs-Sampler for Markov-Modulated-Poisson-Processes |

MMS | Fixed Effects Selection in Linear Mixed Models |

mmtfa | Model-Based Clustering and Classification with Mixtures of Modified t Factor Analyzers |

mmtsne | Multiple Maps t-SNE |

MMWRweek | Convert Dates to MMWR Day, Week, and Year |

mnis | Easy Downloading Capabilities for the Members' Name Information Service |

mnlogit | Multinomial Logit Model |

MNM | Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks |

mnormpow | Multivariate Normal Distributions with Power Integrand |

mnormt | The Multivariate Normal and t Distributions |

MNP | R Package for Fitting the Multinomial Probit Model |

mnreadR | MNREAD Parameters Estimation and Curve Plotting |

MNS | Mixed Neighbourhood Selection |

mobForest | Model Based Random Forest Analysis |

Mobilize | Mobilize plots and functions |

mobsim | Spatial Simulation and Scale-Dependent Analysis of Biodiversity Changes |

MOCCA | Multi-Objective Optimization for Collecting Cluster Alternatives |

mockery | Mocking Library for R |

mockr | Mocking in R |

mod09nrt | Extraction of Bands from MODIS Surface Reflectance Product MOD09 NRT |

modcmfitr | Fit a Modified Connor-Mosimann Distribution to Elicited Quantiles in Multinomial Problems |

modeest | Mode Estimation |

modehunt | Multiscale Analysis for Density Functions |

model4you | Stratified and Personalised Models Based on Model-Based Trees and Forests |

Modelcharts | Classification Model Charts |

modeldb | Fits Models Inside the Database |

Modeler | Classes and Methods for Training and Using Binary Prediction Models |

modelfree | Model-free estimation of a psychometric function |

ModelGood | Validation of risk prediction models |

modelgrid | A Framework for Creating, Managing and Training Multiple Caret Models |

ModelMap | Modeling and Map Production using Random Forest and Stochastic Gradient Boosting |

ModelMetrics | Rapid Calculation of Model Metrics |

modelObj | A Model Object Framework for Regression Analysis |

modelr | Modelling Functions that Work with the Pipe |

modeltools | Tools and Classes for Statistical Models |

modelwordcloud | Model Word Clouds |

moderndive | Tidyverse-Friendly Introductory Linear Regression |

modes | Find the Modes and Assess the Modality of Complex and Mixture Distributions, Especially with Big Datasets |

modest | Model-Based Dose-Escalation Trials |

modEvA | Model Evaluation and Analysis |

modifiedmk | Modified Mann Kendall Trend Tests |

MODIS | Acquisition and Processing of MODIS Products |

modiscloud | R tools for processing Level 2 Cloud Mask products from MODIS |

MODISSnow | Provides a Function to Download MODIS Snow Cover |

MODISTools | Interface to the 'MODIS Land Products Subsets' Web Services |

MODIStsp | A Tool for Automating Download and Preprocessing of MODIS Land Products Data |

modmarg | Calculating Marginal Effects and Levels with Errors |

modMax | Community Structure Detection via Modularity Maximization |

modQR | Multiple-Output Directional Quantile Regression |

modTempEff | Modelling temperature effects using time series data |

modTurPoint | Estimate ED50 Based on Modified Turning Point Method |

moduleColor | Basic Module Functions |

modules | Self Contained Units of Source Code |

modygliani | MOlecular DYnamics GLobal ANalysis |

MOEADr | Component-Wise MOEA/D Implementation |

MoEClust | Parsimonious Model-Based Clustering with Covariates |

moezipfR | Marshall-Olkin Extended Zipf |

mogavs | Multiobjective Genetic Algorithm for Variable Selection in Regression |

MOJOV | Mojo Variants: Rare Variants analysis |

mokken | Conducts Mokken Scale Analysis |

moko | Multi-Objective Kriging Optimization |

molaR | Dental Surface Complexity Measurement Tools |

MoLE | Modeling Language Evolution |

MOLHD | Multiple Objective Latin Hypercube Design |

mombf | Moment and Inverse Moment Bayes Factors |

momentchi2 | Moment-Matching Methods for Weighted Sums of Chi-Squared Random Variables |

moments | Moments, cumulants, skewness, kurtosis and related tests |

momentuHMM | Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models |

Momocs | Morphometrics using R |

momr | Mining Metaomics Data (MetaOMineR) |

MomTrunc | Moments of Folded and Doubly Truncated Multivariate Distributions |

mondate | Keep track of dates in terms of months |

Mondrian | A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events |

MonetDB.R | Connect MonetDB to R |

MonetDBLite | In-Process Version of 'MonetDB' |

mongolite | Fast and Simple 'MongoDB' Client for R |

monitoR | Acoustic Template Detection in R |

monkeylearn | Accesses the Monkeylearn API for Text Classifiers and Extractors |

monmlp | Multi-Layer Perceptron Neural Network with Optional Monotonicity Constraints |

monographaR | Taxonomic Monographs Tools |

MonoInc | Monotonic Increasing |

monomvn | Estimation for Multivariate Normal and Student-t Data with Monotone Missingness |

MonoPhy | Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups in a Phylogeny |

MonoPoly | Functions to Fit Monotone Polynomials |

monoreg | Bayesian Monotonic Regression Using a Marked Point Process Construction |

monotonicity | Test for Monotonicity in Expected Asset Returns, Sorted by Portfolios |

monreg | Nonparametric Monotone Regression |

MonteCarlo | Automatic Parallelized Monte Carlo Simulations |

moonBook | Functions and Datasets for the Book by Keon-Woong Moon |

moonsun | Basic astronomical calculations with R |

mopa | Species Distribution MOdeling with Pseudo-Absences |

mopsocd | MOPSOCD: Multi-objective Particle Swarm Optimization with Crowding Distance |

MOQA | Basic Quality Data Assurance for Epidemiological Research |

MOrder | Check Time Homogeneity and Markov Chain Order |

morgenstemning | Color schemes compatible with red-green color perception difficulties |

morpheus | Estimate Parameters of Mixtures of Logistic Regressions |

Morpho | Calculations and Visualisations Related to Geometric Morphometrics |

morse | Modelling Tools for Reproduction and Survival Data in Ecotoxicology |

MorseGen | Simple raw data generator based on user-specified summary statistics |

mortAAR | Analysis of Archaeological Mortality Data |

MortalityLaws | Parametric Mortality Models, Life Tables and HMD |

MortalitySmooth | Smoothing and Forecasting Poisson Counts with P-Splines |

MortalityTables | A Framework for Various Types of Mortality / Life Tables |

MortCast | Estimation and Projection of Age-Specific Mortality Rates |

mosaic | Project MOSAIC Statistics and Mathematics Teaching Utilities |

mosaicCalc | Function-Based Numerical and Symbolic Differentiation and Antidifferentiation |

mosaicCore | Common Utilities for Other MOSAIC-Family Packages |

mosaicData | Project MOSAIC Data Sets |

mosaicModel | An Interface to Statistical Modeling Independent of Model Architecture |

MOST | Multiphase Optimization Strategy |

mosum | Moving Sum Based Procedures for Changes in the Mean |

MoTBFs | Learning Hybrid Bayesian Networks using Mixtures of Truncated Basis Functions |

MotilityLab | Quantitative Analysis of Motion |

motmot.2.0 | Models of Trait Macroevolution on Trees |

moult | Models for Analysing Moult in Birds |

mountainplot | Mountain Plots, Folded Empirical Cumulative Distribution Plots |

mousetrack | Mouse-Tracking Measures from Trajectory Data |

mousetrap | Process and Analyze Mouse-Tracking Data |

move | Visualizing and Analyzing Animal Track Data |

moveHMM | Animal Movement Modelling using Hidden Markov Models |

moveVis | Movement Data Visualization |

moveWindSpeed | Estimate Wind Speeds from Bird Trajectories |

movMF | Mixtures of von Mises-Fisher Distributions |

mozzie | Weekly Notified Dengue Cases in Sri Lanka |

mp | Multidimensional Projection Techniques |

mpa | CoWords Method |

mpath | Regularized Linear Models |

mpbart | Multinomial Probit Bayesian Additive Regression Trees |

MPCI | Multivariate Process Capability Indices (MPCI) |

mpcv | Multivariate Process Capability Vector |

MPDiR | Data sets and scripts for Modeling Psychophysical Data in R |

mpe | Multiple Primary Endpoints |

MPINet | The package can implement the network-based metabolite pathway identification of pathways |

MPkn | Calculations of One Discrete Model in Several Time Steps |

MPLikelihoodWB | Modified Profile Likelihood Estimation for Weibull Shape and Regression Parameters |

mplot | Graphical Model Stability and Variable Selection Procedures |

MplusAutomation | An R Package for Facilitating Large-Scale Latent Variable Analyses in Mplus |

mpm | Multivariate Projection Methods |

mpmcorrelogram | Multivariate Partial Mantel Correlogram |

mpmi | Mixed-Pair Mutual Information Estimators |

mpoly | Symbolic Computation and More with Multivariate Polynomials |

mppa | Statistics for analysing multiple simultaneous point processes on the real line |

mppR | Multi-Parent Population QTL Analysis |

mpr | Multi-Parameter Regression (MPR) |

MPR.genotyping | Maximum Parsimony of Recombination to Infer Parental Genotypes |

MPSEM | Modeling Phylogenetic Signals using Eigenvector Maps |

MPsychoR | Modern Psychometrics with R |

mpt | Multinomial Processing Tree Models |

MPTinR | Analyze Multinomial Processing Tree Models |

mptools | RAMAS Metapop Tools |

MPV | Data Sets from Montgomery, Peck and Vining |

mQTL | Metabolomic Quantitative Trait Locus Mapping |

mr.raps | Two Sample Mendelian Randomization using Robust Adjusted Profile Score |

mra | Mark-Recapture Analysis |

mratios | Ratios of Coefficients in the General Linear Model |

mrbsizeR | Scale Space Multiresolution Analysis of Random Signals |

MRCE | Multivariate Regression with Covariance Estimation |

mRchmadness | Numerical Tools for Filling Out an NCAA Basketball Tournament Bracket |

MRCV | Methods for Analyzing Multiple Response Categorical Variables (MRCVs) |

mrds | Mark-Recapture Distance Sampling |

mreg | Fits regression models when the outcome is partially missing |

mregions | Marine Regions Data from 'Marineregions.org' |

MRFA | Fitting and Predicting Large-Scale Nonlinear Regression Problems using Multi-Resolution Functional ANOVA (MRFA) Approach |

mrfDepth | Depth Measures in Multivariate, Regression and Functional Settings |

mrgsolve | Simulate from ODE-Based Population PK/PD and Systems Pharmacology Models |

MRH | Multi-Resolution Estimation of the Hazard Rate |

mri | Modified Rand Index (1 and 2.1 and 2.2) and Modified Adjusted Rand Index (1 and 2.1 and 2.2) |

mritc | MRI Tissue Classification |

mRm | An R Package for Conditional Maximum Likelihood Estimation in Mixed Rasch Models |

mrMLM | Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study |

mrMLM.GUI | Multi-Locus Random-SNP-Effect Mixed Linear Model Tools for Genome-Wide Association Study |

MRMR | Multivariate Regression Models for Reserving |

mRMRe | Parallelized Minimum Redundancy, Maximum Relevance (mRMR) Ensemble Feature Selection |

mro | Multiple Correlation |

MRQoL | Minimal Clinically Important Difference and Response Shift Effect for Health-Related Quality of Life |

MRS | Multi-Resolution Scanning for Cross-Sample Differences |

MRSP | Multinomial Response Models with Structured Penalties |

MRsurv | A multiplicative-regression model for relative survival |

MRTSampleSize | A Sample Size Calculator for Micro-Randomized Trials |

MRwarping | Multiresolution time warping for functional data |

ms.sev | Package for Calculation of ARMSS, Local MSSS and Global MSSS |

msaenet | Multi-Step Adaptive Estimation Methods for Sparse Regressions |

msaFACE | Moving Subset Analysis FACE |

msap | Statistical analysis for Methylation-sensitive Amplification Polymorphism data |

msaR | Multiple Sequence Alignment for R Shiny |

MSbox | Mass Spectrometry Tools |

msBP | Multiscale Bernstein Polynomials for Densities |

mschart | Chart Generation for 'Microsoft Word' and 'Microsoft PowerPoint' Documents |

MSCMT | Multivariate Synthetic Control Method Using Time Series |

MScombine | Combine Data from Positive and Negative Ionization Mode Finding Common Entities |

mscstexta4r | R Client for the Microsoft Cognitive Services Text Analytics REST API |

mscstts | R Client for the Microsoft Cognitive Services 'Text-to-Speech' REST API |

mscsweblm4r | R Client for the Microsoft Cognitive Services Web Language Model REST API |

msda | Multi-Class Sparse Discriminant Analysis |

msde | Bayesian Inference for Multivariate Stochastic Differential Equations |

MsdeParEst | Parametric Estimation in Mixed-Effects Stochastic Differential Equations |

mseapca | Metabolite set enrichment analysis for factor loading in principal component analysis |

MSeasy | Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data |

MSeasyTkGUI | MSeasy Tcl/Tk Graphical User Interface |

MSG | Data and Functions for the Book Modern Statistical Graphics |

MSGARCH | Markov-Switching GARCH Models |

MSGLasso | Multivariate Sparse Group Lasso for the Multivariate Multiple Linear Regression with an Arbitrary Group Structure |

msgpack | A Compact, High Speed Data Format |

msgpackR | A library to serialize or unserialize data in MessagePack format |

msgps | Degrees of freedom of elastic net, adaptive lasso and generalized elastic net |

msgtools | Tools for Developing Diagnostic Messages |

msigdbr | MSigDB for Multiple Organisms in a Tidy Data Format |

msir | Model-Based Sliced Inverse Regression |

MSIseq | Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations |

msltrend | Improved Techniques to Estimate Trend, Velocity and Acceleration from Sea Level Records |

msm | Multi-State Markov and Hidden Markov Models in Continuous Time |

msma | Multiblock Sparse Multivariable Analysis |

msme | Functions and Datasets for "Methods of Statistical Model Estimation" |

msmtools | Building Augmented Data to Run Multi-State Models with 'msm' Package |

msos | Data Sets and Functions Used in Multivariate Statistics: Old School by John Marden |

MSQC | Multivariate Statistical Quality Control |

msr | Morse-Smale Approximation, Regression and Visualization |

mssqlR | MSSQL Querying using R |

msSurv | Nonparametric Estimation for Multistate Models |

MST | Multivariate Survival Trees |

mstate | Data Preparation, Estimation and Prediction in Multi-State Models |

mstherm | Analyze MS/MS Protein Melting Data |

mstR | Procedures to Generate Patterns under Multistage Testing |

msu | Multivariate Symmetric Uncertainty and Other Measurements |

MSwM | Fitting Markov Switching Models |

MTA | Multiscalar Territorial Analysis |

mtconnectR | Read Data from Delimited 'MTConnect' Data Files and Perform some Analysis |

MTDrh | Mass Transportation Distance Rank Histogram |

MTE | Maximum Tangent Likelihood and Other Robust Estimation for High-Dimensional Regression |

mthapower | Sample Size and Post-Hoc Power of Association Studies Involving Mitochondrial DNA Haplogroups |

mtk | Mexico ToolKit library (MTK) |

MTS | All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility Models |

mtsdi | Multivariate Time Series Data Imputation |

MTSYS | Methods in Mahalanobis-Taguchi (MT) System |

MTurkR | R Client for the MTurk Requester API |

MTurkRGUI | A Graphical User Interface for MTurkR |

MUCflights | Munich Franz-Josef-Strauss Airport Pattern Analysis |

MuChPoint | Multiple Change Point |

muckrock | Data on Freedom of Information Act Requests |

mudata2 | Interchange Tools for Multi-Parameter Spatiotemporal Data |

mudfold | Multiple UniDimensional unFOLDing |

mueRelativeRisk | Relative Risk Based on the Ratio of Median Unbiased Estimates |

MuFiCokriging | Multi-Fidelity Cokriging models |

muhaz | Hazard Function Estimation in Survival Analysis |

muHVT | Constructing Hierarchical Voronoi Tessellations and Overlay Heatmap for Data Analysis |

muir | Exploring Data with Tree Data Structures |

MullerPlot | Generates Muller Plot from Population/Abundance/Frequency Dynamics Data |

MultAlloc | Optimal Allocation in Stratified Sampling |

multcomp | Simultaneous Inference in General Parametric Models |

multcompView | Visualizations of Paired Comparisons |

multDM | Multivariate Version of the Diebold-Mariano Test |

multdyn | Multiregression Dynamic Models |

MultEq | Multiple Equivalence Tests and Simultaneous Confidence Intervals |

multfisher | Optimal Exact Tests for Multiple Binary Endpoints |

multgee | GEE Solver for Correlated Nominal or Ordinal Multinomial Responses |

multiApply | Apply Functions to Multiple Multidimensional Arguments |

multiAssetOptions | Finite Difference Method for Multi-Asset Option Valuation |

multiband | Period Estimation for Multiple Bands |

MultiBD | Multivariate Birth-Death Processes |

multibiplotGUI | Multibiplot Analysis in R |

multiCA | Multinomial Cochran-Armitage Trend Test |

multicastR | A Companion to the Multi-CAST Collection |

multichull | A Generic Convex-Hull-Based Model Selection Method |

multicmp | Flexible Modeling of Multivariate Count Data via the Multivariate Conway-Maxwell-Poisson Distribution |

MultiCNVDetect | Multiple Copy Number Variation Detection |

multicon | Multivariate Constructs |

multicool | Permutations of Multisets in Cool-Lex Order |

multiDimBio | Multivariate Analysis and Visualization for Biological Data |

multifluo | Dealing with Several Images of a Same Object Constituted of Different Zones |

multifwf | Read Fixed Width Format Files Containing Lines of Different Type |

MultiGHQuad | Multidimensional Gauss-Hermite Quadrature |

multigraph | Plot and Manipulate Multigraphs |

multigroup | Multigroup Data Analysis |

multilaterals | Transitive Index Numbers for Cross-Sections and Panel Data |

MultiLCIRT | Multidimensional Latent Class Item Response Theory Models |

multilevel | Multilevel Functions |

multilevelPSA | Multilevel Propensity Score Analysis |

multimark | Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks |

MultiMeta | Meta-analysis of Multivariate Genome Wide Association Studies |

multimode | Mode Testing and Exploring |

multinbmod | Regression analysis of overdispersed correlated count data |

multinet | Analysis and Mining of Multilayer Social Networks |

multinets | Multilevel Networks Analysis |

MultinomialCI | Simultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz |

multinomRob | Robust Estimation of Overdispersed Multinomial Regression Models |

MultiOrd | Generation of Multivariate Ordinal Variates |

multipanelfigure | Infrastructure to Assemble Multi-Panel Figures (from Grobs) |

multiPIM | Variable Importance Analysis with Population Intervention Models |

MultipleBubbles | Test and Detection of Explosive Behaviors for Time Series |

multipleNCC | Weighted Cox-Regression for Nested Case-Control Data |

multiplex | Algebraic Tools for the Analysis of Multiple Social Networks |

MultiplierDEA | Multiplier Data Envelopment Analysis and Cross Efficiency |

multipol | Multivariate Polynomials |

multirich | Calculate Multivariate Richness via UTC and sUTC |

MultiRNG | Multivariate Pseudo-Random Number Generation |

multiROC | Calculating and Visualizing ROC and PR Curves Across Multi-Class Classifications |

MultiRR | Bias, Precision, and Power for Multi-Level Random Regressions |

multiselect | Selecting Combinations of Predictors by Leveraging Multiple AUCs for an Ordered Multilevel Outcome |

multisensi | Multivariate Sensitivity Analysis |

MultisiteMediation | Causal Mediation Analysis in Multisite Trials |

MultiSkew | Measures, Tests and Removes Multivariate Skewness |

multisom | Clustering a Data Set using Multi-SOM Algorithm |

multispatialCCM | Multispatial Convergent Cross Mapping |

multistate | Fitting Multistate Models |

multistateutils | Utility Functions for Parametric Multi-State Models |

MultiSV | MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing |

multitaper | Spectral Analysis Tools using the Multitaper Method |

multivariance | Measuring Multivariate Dependence Using Distance Multivariance |

MultivariateRandomForest | Models Multivariate Cases Using Random Forests |

MultiVarMI | Multiple Imputation for Multivariate Data |

MultiVarSel | Variable Selection in a Multivariate Linear Model |

multivator | A Multivariate Emulator |

multiwave | Estimation of Multivariate Long-Memory Models Parameters |

multiway | Component Models for Multi-Way Data |

multiwayvcov | Multi-Way Standard Error Clustering |

MultNonParam | Multivariate Nonparametric Methods |

multxpert | Common Multiple Testing Procedures and Gatekeeping Procedures |

muma | Metabolomics Univariate and Multivariate Analysis |

MuMIn | Multi-Model Inference |

mumm | Multiplicative Mixed Models using Template Model Builder |

munfold | Metric Unfolding |

munsell | Utilities for Using Munsell Colours |

munsellinterpol | Interpolate Munsell Renotation Data from Hue/Chroma to CIE/RGB |

muRL | Mailmerge using R, LaTeX, and the Web |

murphydiagram | Murphy Diagrams for Forecast Comparisons |

MUS | Monetary Unit Sampling and Estimation Methods, Widely Used in Auditing |

musica | Multiscale Climate Model Assessment |

musicNMR | Conversion of Nuclear Magnetic Resonance spectrum in audio file |

muStat | Prentice Rank Sum Test and McNemar Test |

mut | Pairwise Likelihood Ratios |

mutoss | Unified Multiple Testing Procedures |

mutossGUI | A Graphical User Interface for the MuToss Project |

mutSignatures | Decipher Mutational Signatures from Somatic Mutational Catalogs |

MuViCP | MultiClass Visualizable Classification using Combination of Projections |

MVA | An Introduction to Applied Multivariate Analysis with R |

mvabund | Statistical Methods for Analysing Multivariate Abundance Data |

MVar | Multivariate Analysis |

MVar.pt | Analise multivariada (brazilian portuguese) |

MVB | Mutivariate Bernoulli log-linear model |

MvBinary | Modelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution |

mvbutils | Workspace organization, code and documentation editing, package prep and editing, etc |

mvc | Multi-View Clustering |

mvcluster | Multi-View Clustering |

mvctm | Multivariate Variance Components Tests for Multilevel Data |

mvcwt | Wavelet analysis of multiple time series |

mvdalab | Multivariate Data Analysis Laboratory |

mvglmmRank | Multivariate Generalized Linear Mixed Models for Ranking Sports Teams |

mvinfluence | Influence Measures and Diagnostic Plots for Multivariate Linear Models |

MVisAGe | Compute and Visualize Bivariate Associations |

MVLM | Multivariate Linear Model with Analytic p-Values |

mvLSW | Multivariate, Locally Stationary Wavelet Process Estimation |

mvmesh | Multivariate Meshes and Histograms in Arbitrary Dimensions |

mvmeta | Multivariate and Univariate Meta-Analysis and Meta-Regression |

mvMISE | A General Framework of Multivariate Mixed-Effects Selection Models |

mvMonitoring | Multi-State Adaptive Dynamic Principal Component Analysis for Multivariate Process Monitoring |

mvMORPH | Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data |

MVN | Multivariate Normality Tests |

mvna | Nelson-Aalen Estimator of the Cumulative Hazard in Multistate Models |

mvnfast | Fast Multivariate Normal and Student's t Methods |

mvngGrAd | Moving Grid Adjustment in Plant Breeding Field Trials |

mvnmle | ML Estimation for Multivariate Normal Data with Missing Values |

mvnormtest | Normality test for multivariate variables |

mvnpermute | Generate New Multivariate Normal Samples from Permutations |

mvnTest | Goodness of Fit Tests for Multivariate Normality |

mvord | Multivariate Ordinal Regression Models |

mvoutlier | Multivariate Outlier Detection Based on Robust Methods |

mvPot | Multivariate Peaks-over-Threshold Modelling for Spatial Extreme Events |

mvProbit | Multivariate Probit Models |

mvprpb | Orthant Probability of the Multivariate Normal Distribution |

mvQuad | Methods for Multivariate Quadrature |

MVR | Mean-Variance Regularization |

mvrtn | Mean and Variance of Truncated Normal Distribution |

mvsf | Shapiro-Francia Multivariate Normality Test |

mvShapiroTest | Generalized Shapiro-Wilk test for multivariate normality |

mvSLOUCH | Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses |

mvst | Bayesian Inference for the Multivariate Skew-t Model |

MVT | Estimation and Testing for the Multivariate t-Distribution |

mvtboost | Tree Boosting for Multivariate Outcomes |

mvtmeta | Multivariate meta-analysis |

mvtnorm | Multivariate Normal and t Distributions |

mvtsplot | Multivariate Time Series Plot |

mwa | Causal Inference in Spatiotemporal Event Data |

mwaved | Multichannel Wavelet Deconvolution with Additive Long Memory Noise |

MWLasso | Penalized Moving-Window Lasso Method for Genome-Wide Association Studies |

MWRidge | Two Stage Moving-Window Ridge Method for Prediction and Estimation |

mxkssd | Efficient mixed-level k-circulant supersaturated designs |

MXM | Feature Selection (Including Multiple Solutions) and Bayesian Networks |

My.stepwise | Stepwise Variable Selection Procedures for Regression Analysis |

mycobacrvR | Integrative immunoinformatics for Mycobacterial diseases in R platform |

mycor | Automatic Correlation and Regression Test in a 'data.frame' |

myepisodes | MyEpisodes RSS/API functions |

Myrrix | Interface to Myrrix. Myrrix is a Complete, Real-Time, Scalable Clustering and Recommender System, Evolved from Apache Mahout |

Myrrixjars | R/Myrrix Interface Jars |

myTAI | Evolutionary Transcriptomics |

mztwinreg | Regression Models for Monozygotic Twin Data |

n1qn1 | Port of the 'Scilab' 'n1qn1' Module for Unconstrained BFGS Optimization |

na.tools | Comprehensive Library for Working with Missing (NA) Values in Vectors |

nabor | Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low Dimensions |

NADA | Nondetects and Data Analysis for Environmental Data |

nadiv | (Non)Additive Genetic Relatedness Matrices |

NAEPprimer | The NAEP Primer |

naivebayes | High Performance Implementation of the Naive Bayes Algorithm |

naivereg | Nonparametric Additive Instrumental Variable Estimator: A Group Shrinkage Estimation Perspective |

NAM | Nested Association Mapping |

namedCapture | Named Capture Regular Expressions |

NameNeedle | Using Needleman-Wunsch to Match Sample Names |

namespace | Provide namespace managment functions not (yet) present in base R |

nandb | Number and Brightness Image Analysis |

naniar | Data Structures, Summaries, and Visualisations for Missing Data |

nanop | Tools for Nanoparticle Simulation and Calculation of PDF and Total Scattering Structure Function |

NanoStringNorm | Normalize NanoString miRNA and mRNA Data |

nanotime | Nanosecond-Resolution Time for R |

NAPPA | Performs the Processing and Normalisation of Nanostring miRNA and mRNA Data |

naptime | A Flexible and Robust Sys.sleep() Replacement |

nardl | Nonlinear Cointegrating Autoregressive Distributed Lag Model |

narray | Subset- And Name-Aware Array Utility Functions |

nasadata | Interface to Various NASA API's |

nasaweather | Collection of datasets from the ASA 2006 data expo |

nat | NeuroAnatomy Toolbox for Analysis of 3D Image Data |

nat.nblast | NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering |

nat.templatebrains | NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains |

nat.utils | File System Utility Functions for 'NeuroAnatomy Toolbox' |

natserv | 'NatureServe' Interface |

natural | Estimating the Error Variance in a High-Dimensional Linear Model |

naturalsort | Natural Ordering |

NatureSounds | Animal Sounds for Bioacustic Analysis |

NB | Maximum Likelihood method in estimating effective population size from genetic data |

NB.MClust | Negative Binomial Model-Based Clustering |

nbc4va | Bayes Classifier for Verbal Autopsy Data |

NbClust | Determining the Best Number of Clusters in a Data Set |

nbconvertR | Vignette Engine Wrapping IPython Notebooks |

NBDdirichlet | NBD-Dirichlet Model of Consumer Buying Behavior for Marketing Research |

NBLDA | Negative Binomial Linear Discriminant Analysis |

nbpMatching | Functions for Optimal Non-Bipartite Matching |

NBPSeq | Negative Binomial Models for RNA-Sequencing Data |

NCA | Necessary Condition Analysis |

nCal | Nonlinear Calibration |

ncar | Noncompartmental Analysis for Pharmacokinetic Report |

ncbit | retrieve and build NBCI taxonomic data |

ncdf.tools | Easier 'NetCDF' File Handling |

ncdf4 | Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files |

ncdf4.helpers | Helper functions for use with the ncdf4 package |

ncdump | Extract Metadata from 'NetCDF' Files as Data Frames |

nCDunnett | Noncentral Dunnett's Test Distribution |

ncf | Spatial Covariance Functions |

ncg | Computes the noncentral gamma function |

ncmeta | Straightforward 'NetCDF' Metadata |

NCmisc | Miscellaneous Functions for Creating Adaptive Functions and Scripts |

ncodeR | Techniques for Automated Classifiers |

ncpen | Nonconvex Penalized Estimation for Generalized Linear Models |

NCSampling | Nearest Centroid (NC) Sampling |

NCutYX | Clustering of Omics Data of Multiple Types with a Multilayer Network Representation |

ncvreg | Regularization Paths for SCAD and MCP Penalized Regression Models |

ndjson | Wicked-Fast Streaming 'JSON' ('ndjson') Reader |

ndl | Naive Discriminative Learning |

ndtv | Network Dynamic Temporal Visualizations |

NEArender | Network Enrichment Analysis |

nearfar | Near-Far Matching |

neariso | Near-Isotonic Regression |

neat | Efficient Network Enrichment Analysis Test |

NeatMap | Non-clustered heatmap alternatives |

neatmaps | Heatmaps for Multiple Network Data |

needs | Attaches and Installs Packages |

needy | needy |

NEff | Calculating Effective Sizes Based on Known Demographic Parameters of a Population |

NegBinBetaBinreg | Negative Binomial and Beta Binomial Bayesian Regression Models |

negenes | Estimating the Number of Essential Genes in a Genome |

neighbr | Classification, Regression, Clustering with K Nearest Neighbors |

neldermead | R Port of the 'Scilab' Neldermead Module |

neotoma | Access to the Neotoma Paleoecological Database Through R |

nephro | Utilities for Nephrology |

NEpiC | Network Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals |

nesRdata | National Eutrophication Survey Data |

NestedCategBayesImpute | Modeling and Generating Synthetic Versions of Nested Categorical Data in the Presence of Impossible Combinations |

NestedCohort | Survival Analysis for Cohorts with Missing Covariate Information |

nestedRanksTest | Mann-Whitney-Wilcoxon Test for Nested Ranks |

nestfs | Cross-Validated (Nested) Forward Selection |

net.security | Security Standards Data Sets |

netassoc | Inference of Species Associations from Co-Occurrence Data |

NetCluster | Clustering for networks |

netcoh | Statistical Modeling with Network Cohesion |

netCoin | Interactive Networks with R |

netcom | Dynamic Network Alignment |

NetComp | Network Generation and Comparison |

NetData | Network Data for McFarland's SNA R labs |

netdep | Testing for Network Dependence |

netdiffuseR | Analysis of Diffusion and Contagion Processes on Networks |

netgen | Network Generator for Combinatorial Graph Problems |

netgsa | Network-Based Gene Set Analysis |

netgwas | Network-Based Genome Wide Association Studies |

NetIndices | Estimating network indices, including trophic structure of foodwebs in R |

netjack | Tools for Working with Samples of Networks |

NetLogoR | Build and Run Spatially Explicit Agent-Based Models |

netmeta | Network Meta-Analysis using Frequentist Methods |

NetOrigin | Origin Estimation for Propagation Processes on Complex Networks |

NetPreProc | Network Pre-Processing and Normalization |

netrankr | Analyzing Partial Rankings in Networks |

netregR | Regression of Network Responses |

NetRep | Permutation Testing Network Module Preservation Across Datasets |

nets | Network Estimation for Time Series |

netSEM | Network Structural Equation Modeling |

NetSwan | Network Strengths and Weaknesses Analysis |

NetWeaver | Graphic Presentation of Complex Genomic and Network Data Analysis |

network | Classes for Relational Data |

NetworkChange | Bayesian Package for Network Changepoint Analysis |

NetworkComparisonTest | Statistical Comparison of Two Networks Based on Three Invariance Measures |

networkD3 | D3 JavaScript Network Graphs from R |

NetworkDistance | Distance Measures for Networks |

networkDynamic | Dynamic Extensions for Network Objects |

networkDynamicData | Dynamic (Longitudinal) Network Datasets |

NetworkExtinction | Extinction Simulation in Food Webs |

networkGen | Network Maze Generator |

networkR | Network Analysis and Visualization |

networkreporting | Tools for using Network Reporting Estimators |

NetworkRiskMeasures | Risk Measures for (Financial) Networks |

networksis | Simulate Bipartite Graphs with Fixed Marginals Through Sequential Importance Sampling |

networkTomography | Tools for network tomography |

NetworkToolbox | Methods and Measures for Brain, Cognitive, and Psychometric Network Analysis |

networktools | Tools for Identifying Important Nodes in Networks |

neural | Neural Networks |

neuralnet | Training of Neural Networks |

NeuralNetTools | Visualization and Analysis Tools for Neural Networks |

neurobase | 'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects |

neuroblastoma | Neuroblastoma copy number profiles |

neurohcp | Human 'Connectome' Project Interface |

neuroim | Data Structures and Handling for Neuroimaging Data |

neuropsychology | Toolbox for Psychologists, Neuropsychologists and Neuroscientists |

neuRosim | Functions to Generate fMRI Data Including Activated Data, Noise Data and Resting State Data |

neutralitytestr | Test for a Neutral Evolutionary Model in Cancer Sequencing Data |

neverhpfilter | A Better Alternative to the Hodrick-Prescott Filter |

Newdistns | Computes Pdf, Cdf, Quantile and Random Numbers, Measures of Inference for 19 General Families of Distributions |

newTestSurvRec | Statistical Tests to Compare Curves with Recurrent Events |

nFactors | Parallel Analysis and Non Graphical Solutions to the Cattell Scree Test |

nFCA | Numerical Formal Concept Analysis for Systematic Clustering |

NFP | Network Fingerprint Framework in R |

NFWdist | The Standard Distribution Functions for the 3D NFW Profile |

ngram | Fast n-Gram 'Tokenization' |

ngramrr | A Simple General Purpose N-Gram Tokenizer |

ngspatial | Fitting the Centered Autologistic and Sparse Spatial Generalized Linear Mixed Models for Areal Data |

ngstk | Next-Generation Sequencing (NGS) Data Analysis Toolkit |

NHANES | Data from the US National Health and Nutrition Examination Study |

nhanesA | NHANES Data Retrieval |

NHEMOtree | Non-hierarchical evolutionary multi-objective tree learner to perform cost-sensitive classification |

NHLData | Scores for Every Season Since the Founding of the NHL in 1917 |

nhlscrapr | Compiling the NHL Real Time Scoring System Database for easy use in R |

NHMSAR | Non-Homogeneous Markov Switching Autoregressive Models |

NHPoisson | Modelling and Validation of Non Homogeneous Poisson Processes |

nhstplot | Plot Null Hypothesis Significance Tests |

nice | Get or Set UNIX Niceness |

nicheROVER | (Niche) (R)egion and Niche (Over)lap Metrics for Multidimensional Ecological Niches |

NightDay | Night and Day Boundary Plot Function |

nilde | Nonnegative Integer Solutions of Linear Diophantine Equations with Applications |

nima | Nima Hejazi's R Toolbox |

nimble | MCMC, Particle Filtering, and Programmable Hierarchical Modeling |

nipals | Principal Components Analysis using NIPALS with Gram-Schmidt Orthogonalization |

Nippon | Japanese Utility Functions and Data |

NipponMap | Japanese Map Data and Functions |

NIPTeR | Fast and Accurate Trisomy Prediction in Non-Invasive Prenatal Testing |

NIRStat | Novel Statistical Methods for Studying Near-Infrared Spectroscopy (NIRS) Time Series Data |

NISTnls | Nonlinear least squares examples from NIST |

NISTunits | Fundamental Physical Constants and Unit Conversions from NIST |

NITPicker | Finds the Best Subset of Points to Sample |

nitrcbot | Download Image Files from the 'NeuroImaging Tools and Resources Collaboratory' |

nivm | Noninferiority Tests with Variable Margins |

nlaR | Interface to the National Lakes Assessment |

NlcOptim | Solve Nonlinear Optimization with Nonlinear Constraints |

nlcv | Nested Loop Cross Validation |

nleqslv | Solve Systems of Nonlinear Equations |

NlinTS | Non Linear Time Series Analysis |

nlirms | Non-Life Insurance Rate-Making System |

nlme | Linear and Nonlinear Mixed Effects Models |

nlmeODE | Non-linear mixed-effects modelling in nlme using differential equations |

nlmeU | Datasets and utility functions enhancing functionality of nlme package |

nlmixr | Nonlinear Mixed Effects Models in Population Pharmacokinetics and Pharmacodynamics |

NLMR | Simulating Neutral Landscape Models |

nlmrt | Functions for Nonlinear Least Squares Solutions |

nlnet | Nonlinear Network Reconstruction, Clustering, and Variable Selection Based on DCOL (Distance Based on Conditional Ordered List) |

nloptr | R interface to NLopt |

NLP | Natural Language Processing Infrastructure |

NLPutils | Natural Language Processing Utilities |

nlr | Nonlinear Regression Modelling using Robust Methods |

nlreg | Higher Order Inference for Nonlinear Heteroscedastic Models |

NLRoot | searching for the root of equation |

nlrr | Non-Linear Relative Risk Estimation and Plotting |

nls.multstart | Robust Non-Linear Regression using AIC Scores |

nls2 | Non-linear regression with brute force |

nlsem | Fitting Structural Equation Mixture Models |

nlshelper | Convenient Functions for Non-Linear Regression |

nlshrink | Non-Linear Shrinkage Estimation of Population Eigenvalues and Covariance Matrices |

nlsMicrobio | Nonlinear regression in predictive microbiology |

nlsmsn | Fitting nonlinear models with scale mixture of skew-normal distributions |

nlsr | Functions for Nonlinear Least Squares Solutions |

nlsrk | Runge-Kutta Solver for Function nls() |

nlstimedist | Non-Linear Model Fitting of Time Distribution of Biological Phenomena |

nlstools | Tools for Nonlinear Regression Analysis |

NlsyLinks | Utilities and Kinship Information for Research with the NLSY |

nlt | A Nondecimated Lifting Transform for Signal Denoising |

nlts | (Non)Linear Time Series Analysis |

nLTT | Calculate the NLTT Statistic |

nlWaldTest | Wald Test of Nonlinear Restrictions and Nonlinear CI |

nmaINLA | Network Meta-Analysis using Integrated Nested Laplace Approximations |

nmathresh | Thresholds and Invariant Intervals for Network Meta-Analysis |

NMF | Algorithms and Framework for Nonnegative Matrix Factorization (NMF) |

nmfem | NMF-EM Algorithm |

nmfgpu4R | Non-Negative Matrix Factorization (NMF) using CUDA |

NMFN | Non-negative Matrix Factorization |

NMI | Normalized Mutual Information of Community Structure in Network |

nmixgof | Goodness of Fit Checks for Binomial N-Mixture Models |

NMOF | Numerical Methods and Optimization in Finance |

nmslibR | Non Metric Space (Approximate) Library |

nmw | Understanding Nonlinear Mixed Effects Modeling for Population Pharmacokinetics |

nna | Nearest-Neighbor Analysis |

nneo | 'NEON' 'API' Client |

nnet | Feed-Forward Neural Networks and Multinomial Log-Linear Models |

nnetpredint | Prediction Intervals of Multi-Layer Neural Networks |

nnfor | Time Series Forecasting with Neural Networks |

nngeo | k-Nearest Neighbor Join for Spatial Data |

nnlasso | Non-Negative Lasso and Elastic Net Penalized Generalized Linear Models |

NNLM | Fast and Versatile Non-Negative Matrix Factorization |

nnls | The Lawson-Hanson algorithm for non-negative least squares (NNLS) |

NNMIS | Nearest Neighbor Based Multiple Imputation for Survival Data with Missing Covariates |

NNS | Nonlinear Nonparametric Statistics |

NNTbiomarker | Calculate Design Parameters for Biomarker Validation Studies |

nnTensor | Non-Negative Tensor Decomposition |

noaastormevents | Explore NOAA Storm Events Database |

NOAAWeather | Get Weather Data from NOAA Weather Stations |

nodeHarvest | Node Harvest for Regression and Classification |

nodiv | Compares the Distribution of Sister Clades Through a Phylogeny |

nofrills | Low-Cost Anonymous Functions |

noia | Implementation of the Natural and Orthogonal InterAction (NOIA) model |

noise | Estimation of Intrinsic and Extrinsic Noise from Single-Cell Data |

NoiseFiltersR | Label Noise Filters for Data Preprocessing in Classification |

nomclust | Hierarchical Nominal Clustering Package |

NominalLogisticBiplot | Biplot representations of categorical data |

nomine | Classify Names by Gender, U.S. Ethnicity, and Leaf Nationality |

nomisr | Access 'Nomis' UK Labour Market Data |

nomogramEx | Extract Equations from a Nomogram |

noncensus | U.S. Census Regional and Demographic Data |

NonCompart | Noncompartmental Analysis for Pharmacokinetic Data |

noncompliance | Causal Inference in the Presence of Treatment Noncompliance Under the Binary Instrumental Variable Model |

noncomplyR | Bayesian Analysis of Randomized Experiments with Non-Compliance |

nonlinearICP | Invariant Causal Prediction for Nonlinear Models |

nonlinearTseries | Nonlinear Time Series Analysis |

nonmem2R | Loading NONMEM Output Files and Simulate with Parameter Uncertainty |

nonmemica | Create and Evaluate NONMEM Models in a Project Context |

nonnest2 | Tests of Non-Nested Models |

nonpar | A Collection of Nonparametric Hypothesis Tests |

nonparaeff | Nonparametric Methods for Measuring Efficiency and Productivity |

Nonpareil | Metagenome Coverage Estimation and Projections for 'Nonpareil' |

NonpModelCheck | Model Checking and Variable Selection in Nonparametric Regression |

nonrandom | Stratification and matching by the propensity score |

nontarget | Detecting Isotope, Adduct and Homologue Relations in LC-MS Data |

nontargetData | Quantized simulation data of isotope pattern centroids |

nopaco | Non-Parametric Concordance Coefficient |

nopp | Nash Optimal Party Positions |

nor1mix | Normal (1-d) Mixture Models (S3 Classes and Methods) |

nord | Arctic Ice Studio's Nord and Group of Seven Inspired Colour Palettes |

nordklimdata1 | Dataset for Climate Analysis with Data from the Nordic Region |

norm | Analysis of multivariate normal datasets with missing values |

NORMA | Builds General Noise SVRs |

NormalGamma | Normal-gamma convolution model |

NormalizeMets | Analysis of Metabolomics Data |

NormalLaplace | The Normal Laplace Distribution |

normalp | Routines for Exponential Power Distribution |

normalr | Normalisation of Multiple Variables in Large-Scale Datasets |

NormExpression | Normalize Gene Expression Data using Evaluated Methods |

NormPsy | Normalisation of Psychometric Tests |

NORMT3 | Evaluates complex erf, erfc, Faddeeva, and density of sum of Gaussian and Student's t |

normtest | Tests for Normality |

normwhn.test | Normality and White Noise Testing |

norris | All of Your Chuck Norris Needs |

NORRRM | Geochemical Toolkit for R |

NORTARA | Generation of Multivariate Data with Arbitrary Marginals |

nortest | Tests for Normality |

nortestARMA | Neyman Smooth Tests of Normality for the Errors of ARMA Models |

nos | Compute Node Overlap and Segregation in Ecological Networks |

nose | nose Package for R |

NostalgiR | Advanced Text-Based Plots |

not | Narrowest-Over-Threshold Change-Point Detection |

notifyme | Send Alerts to your Cellphone and Phillips Hue Lights |

notifyR | Send push notifications to your smartphone via pushover.net (ACCOUNT REQUIRED!) |

nowcasting | Nowcast Analysis and Create Real-Time Data Basis |

noweb | Noweb system for R |

Nozzle.R1 | Nozzle Reports |

np | Nonparametric Kernel Smoothing Methods for Mixed Data Types |

nparACT | Non-Parametric Measures of Actigraphy Data |

nparcomp | Multiple Comparisons and Simultaneous Confidence Intervals |

nparLD | Nonparametric Analysis of Longitudinal Data in Factorial Experiments |

nparMD | Nonparametric Analysis of Multivariate Data in Factorial Designs |

nparsurv | Nonparametric Tests for Main Effects, Simple Effects and Interaction Effect in a Factorial Design with Censored Data |

NPBayesImpute | Non-Parametric Bayesian Multiple Imputation for Categorical Data |

npbr | Nonparametric Boundary Regression |

NPC | Nonparametric Combination of Hypothesis Tests |

NPCD | Nonparametric Methods for Cognitive Diagnosis |

NPCirc | Nonparametric Circular Methods |

npcopTest | Non Parametric Test for Detecting Changes in the Copula |

npcp | Some Nonparametric CUSUM Tests for Change-Point Detection in Possibly Multivariate Observations |

NPflow | Bayesian Nonparametrics for Automatic Gating of Flow-Cytometry Data |

NPHMC | Sample Size Calculation for the Proportional Hazards Mixture Cure Model |

npIntFactRep | Nonparametric Interaction Tests for Factorial Designs with Repeated Measures |

nplplot | Plotting linkage and association results |

nplr | N-Parameter Logistic Regression |

npmlda | Nonparametric Models for Longitudinal Data |

NPMLEcmprsk | Type-Specific Failure Rate and Hazard Rate on Competing Risks Data |

npmlreg | Nonparametric Maximum Likelihood Estimation for Random Effect Models |

NPMOD | Non Parametric Module |

npmr | Nuclear Penalized Multinomial Regression |

npmv | Nonparametric Comparison of Multivariate Samples |

NPMVCP | Nonparametric Multivariate Change Point Model |

nppbib | Nonparametric Partially-Balanced Incomplete Block Design Analysis |

npphen | Vegetation Phenological Cycle and Anomaly Detection using Remote Sensing Data |

npregfast | Nonparametric Estimation of Regression Models with Factor-by-Curve Interactions |

nprobust | Nonparametric Robust Estimation and Inference Methods using Local Polynomial Regression and Kernel Density Estimation |

nproc | Neyman-Pearson (NP) Classification Algorithms and NP Receiver Operating Characteristic (NP-ROC) Curves |

npROCRegression | Kernel-Based Nonparametric ROC Regression Modelling |

NPS | Convenience Functions and Tests for Working With the Net Promoter Score (NPS) |

npsf | Nonparametric and Stochastic Efficiency and Productivity Analysis |

NPsimex | Nonparametric Smoothing for contaminated data using Simulation-Extrapolation |

npsm | Package for Nonparametric Statistical Methods using R |

npsp | Nonparametric Spatial Statistics |

npsr | Validate Instrumental Variables using NPS |

npst | Generalization of Hewitt's Seasonality Test |

npsurv | Nonparametric Survival Analysis |

nricens | NRI for Risk Prediction Models with Time to Event and Binary Response Data |

NSA | Post-normalization of total copy numbers |

nscancor | Non-Negative and Sparse CCA |

NScluster | Simulation and Estimation of the Neyman-Scott Type Spatial Cluster Models |

nscprepr | Prepares and Writes Files to Submit to the National Student Clearinghouse |

nse | Numerical Standard Errors Computation in R |

nsga2R | Elitist Non-dominated Sorting Genetic Algorithm based on R |

nsgp | Non-Stationary Gaussian Process Regression |

NSM3 | Functions and Datasets to Accompany Hollander, Wolfe, and Chicken - Nonparametric Statistical Methods, Third Edition |

nspmix | Nonparametric and Semiparametric Mixture Estimation |

nsprcomp | Non-Negative and Sparse PCA |

nsRFA | Non-Supervised Regional Frequency Analysis |

nsROC | Non-Standard ROC Curve Analysis |

NSUM | Network Scale Up Method |

nucim | Nucleome Imaging Toolbox |

NUCOMBog | NUtrient Cycling and COMpetition Model Undisturbed Open Bog Ecosystems in a Temperate to Sub-Boreal Climate |

nullabor | Tools for Graphical Inference |

numbers | Number-Theoretic Functions |

numbersBR | Validate, Compare and Format Identification Numbers from Brazil |

numDeriv | Accurate Numerical Derivatives |

Numero | Statistical Framework to Define Subgroups in Complex Datasets |

numform | Tools to Format Numbers for Publication |

numGen | Number Series Generator |

numKM | Create a Kaplan-Meier Plot with Numbers at Risk |

numOSL | Numeric Routines for Optically Stimulated Luminescence Dating |

NutrienTrackeR | Food Composition Information and Dietary Assessment |

nutshell | Data for "R in a Nutshell" |

nutshell.audioscrobbler | Audioscrobbler data for "R in a Nutshell" |

nutshell.bbdb | Baseball Database for "R in a Nutshell" |

nVennR | Create n-Dimensional, Quasi-Proportional Venn Diagrams |

nws | R functions for NetWorkSpaces and Sleigh |

nycflights13 | Flights that Departed NYC in 2013 |

nyctaxi | Accessing New York City Taxi Data |

nzelect | New Zealand Election Data |

nzpullover | Driving Offences in New Zealand Between 2009 and 2016 |

oaColors | OpenAnalytics Colors Package |

oai | General Purpose 'Oai-PMH' Services Client |

OAIHarvester | Harvest Metadata Using OAI-PMH Version 2.0 |

oaPlots | OpenAnalytics Plots Package |

oaqc | Computation of the Orbit-Aware Quad Census |

Oarray | Arrays with Arbitrary Offsets |

oasis | Multiple Sclerosis Lesion Segmentation using Magnetic Resonance Imaging (MRI) |

OasisR | Outright Tool for the Analysis of Spatial Inequalities and Segregation |

oaxaca | Blinder-Oaxaca Decomposition |

obAnalytics | Limit Order Book Analytics |

objectProperties | A factory of self-describing properties |

objectSignals | objectSignals |

obliclus | Cluster-based factor rotation |

obliqueRF | Oblique Random Forests from Recursive Linear Model Splits |

OBMbpkg | Estimate the Population Size for the Mb Capture-Recapture Model |

OBRE | Optimal B-Robust Estimator Tools |

obs.agree | An R package to assess agreement between observers |

Observation | Collect and Process Physical Activity Direct Observation Data |

observer | Observe and Check your Data |

OBsMD | Objective Bayesian Model Discrimination in Follow-Up Designs |

obsSens | Sensitivity analysis for Observational studies |

oc | Optimal Classification Roll Call Analysis Software |

OCA | Optimal Capital Allocations |

occ | Estimates PET Neuroreceptor Occupancies |

oce | Analysis of Oceanographic Data |

oceanmap | A Plotting Toolbox for 2D Oceanographic Data |

OceanView | Visualisation of Oceanographic Data and Model Output |

ocedata | Oceanographic Datasets for Oce |

ockc | Order Constrained Solutions in k-Means Clustering |

ocomposition | Regression for Rank-Indexed Compositional Data |

OData | R Helper for OData Web Services |

ODB | Open Document Databases (.odb) management |

odbc | Connect to ODBC Compatible Databases (using the DBI Interface) |

odds.converter | Betting Odds Conversion |

oddsratio | Odds Ratio Calculation for GAM(M)s & GLM(M)s |

odeintr | C++ ODE Solvers Compiled on-Demand |

ODEnetwork | Network of Differential Equations |

ODEsensitivity | Sensitivity Analysis of Ordinary Differential Equations |

odk | Convert 'ODK' or 'XLSForm' to 'SPSS' Data Frame |

odpc | One-Sided Dynamic Principal Components |

odr | Optimal Design and Statistical Power of Multilevel Randomized Trials |

oec | Observatory of Economic Complexity API Wrapper and Utility Program |

OECD | Search and Extract Data from the OECD |

oem | Orthogonalizing EM: Penalized Regression for Big Tall Data |

officer | Manipulation of Microsoft Word and PowerPoint Documents |

ofGEM | A Meta-Analysis Approach with Filtering for Identifying Gene-Level Gene-Environment Interactions with Genetic Association Data |

OGI | Objective General Index |

oglmx | Estimation of Ordered Generalized Linear Models |

Ohit | OGA+HDIC+Trim and High-Dimensional Linear Regression Models |

Ohmage | R Client for Ohmage 2 server |

OHPL | Ordered Homogeneity Pursuit Lasso for Group Variable Selection |

ohtadstats | Tomoka Ohta D Statistics |

OIdata | Data sets and supplements (OpenIntro) |

oii | Crosstab and Statistical Tests for OII MSc Stats Course |

OIsurv | Survival analysis supplement to OpenIntro guide |

OjaNP | Multivariate Methods Based on the Oja Median and Related Concepts |

okcupiddata | OkCupid Profile Data for Introductory Statistics and Data Science Courses |

okmesonet | Retrieve Oklahoma Mesonet climatological data |

olctools | Open Location Code Handling in R |

OligoSpecificitySystem | Oligo Specificity System |

OLScurve | OLS growth curve trajectories |

olsrr | Tools for Building OLS Regression Models |

omd | filter the molecular descriptors for QSAR |

OmicKriging | Poly-Omic Prediction of Complex TRaits |

omics | '–omics' Data Analysis Toolbox |

OmicsPLS | Perform Two-Way Orthogonal Partial Least Squares |

ompr | Model and Solve Mixed Integer Linear Programs |

ompr.roi | A Solver for 'ompr' that Uses the R Optimization Infrastructure ('ROI') |

OnAge | Test of Between-Group Differences in the Onset of Senescence |

oncomodel | Maximum likelihood tree models for oncogenesis |

Oncotree | Estimating oncogenetic trees |

OneArmPhaseTwoStudy | Planning, Conducting, and Analysing Single-Arm Phase II Studies |

onehot | Fast Onehot Encoding for Data.frames |

onemap | Construction of Genetic Maps in Experimental Crosses: Full-Sib, RILs, F2 and Backcrosses |

OneR | One Rule Machine Learning Classification Algorithm with Enhancements |

ONETr | Efficient Authenticated Interaction with the O*NET API |

OneTwoSamples | Deal with one and two (normal) samples |

onewaytests | One-Way Tests in Independent Groups Designs |

onion | Octonions and Quaternions |

onlinePCA | Online Principal Component Analysis |

onlineVAR | Online Fitting of Time-Adaptive Lasso Vector Auto Regression |

onls | Orthogonal Nonlinear Least-Squares Regression |

onnx | R Interface to 'ONNX' |

ontologyIndex | Functions for Reading Ontologies into R |

ontologyPlot | Functions for Visualising Sets of Ontological Terms |

ontologySimilarity | Functions for Calculating Ontological Similarities |

OOBCurve | Out of Bag Learning Curve |

OOmisc | Ozgur-Ozlem Miscellaneous |

oompaBase | Class Unions, Matrix Operations, and Color Schemes for OOMPA |

oompaData | Data to Illustrate OOMPA Algorithms |

OOR | Optimistic Optimization in R |

OpasnetUtils | Opasnet Modelling Environment Utility Functions |

OPDOE | Optimal Design of Experiments |

openadds | Client to Access 'Openaddresses' Data |

openair | Tools for the Analysis of Air Pollution Data |

opencage | Interface to the OpenCage API |

OpenCL | Interface allowing R to use OpenCL |

opencpu | Producing and Reproducing Results |

openCR | Open Population Capture-Recapture |

opendotaR | Interface for OpenDota API |

openEBGM | EBGM Scores for Mining Large Contingency Tables |

OpenImageR | An Image Processing Toolkit |

openintro | Data Sets and Supplemental Functions from 'OpenIntro' Textbooks |

OpenML | Open Machine Learning and Open Data Platform |

OpenMPController | Control Number of OpenMP Threads Dynamically |

OpenMx | Extended Structural Equation Modelling |

openNLP | Apache OpenNLP Tools Interface |

openNLPdata | Apache OpenNLP Jars and Basic English Language Models |

OpenRepGrid | Tools to Analyze Repertory Grid Data |

opensensmapr | Client for the Data API of openSenseMap.org |

openssl | Toolkit for Encryption, Signatures and Certificates Based on OpenSSL |

openSTARS | An Open Source Implementation of the 'ArcGIS' Toolbox 'STARS' |

OpenStreetMap | Access to Open Street Map Raster Images |

opentraj | Tools for Creating and Analysing Air Trajectory Data |

openVA | Automated Method for Verbal Autopsy |

openxlsx | Read, Write and Edit XLSX Files |

opera | Online Prediction by Expert Aggregation |