CRAN Package Check Results for Package SNPassoc

Last updated on 2021-10-24 07:57:34 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.0-2 20.75 189.71 210.46 WARN
r-devel-linux-x86_64-debian-gcc 2.0-2 15.36 181.73 197.09 OK
r-devel-linux-x86_64-fedora-clang 2.0-2 261.62 WARN
r-devel-linux-x86_64-fedora-gcc 2.0-2 326.46 NOTE
r-devel-windows-x86_64 2.0-2 31.00 284.00 315.00 OK
r-devel-windows-x86_64-gcc10-UCRT 2.0-2 NOTE
r-patched-linux-x86_64 2.0-2 22.12 232.26 254.38 OK
r-patched-solaris-x86 2.0-2 317.30 NOTE
r-release-linux-x86_64 2.0-2 17.85 233.34 251.19 OK
r-release-macos-arm64 2.0-2 NOTE
r-release-macos-x86_64 2.0-2 NOTE
r-release-windows-ix86+x86_64 2.0-2 31.00 288.00 319.00 OK
r-oldrel-macos-x86_64 2.0-2 NOTE
r-oldrel-windows-ix86+x86_64 2.0-2 41.00 295.00 336.00 OK

Check Details

Version: 2.0-2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building 'SNPassoc.Rmd' using rmarkdown
    Registered S3 method overwritten by 'SNPassoc':
     method from
     summary.haplo.glm haplo.stats
    Warning in `[.data.frame`(x, colSNPs, drop = FALSE) :
     'drop' argument will be ignored
    
     *** caught segfault ***
    address 0x18, cause 'memory not mapped'
    An irrecoverable exception occurred. R is aborting now ...
    
     *** caught segfault ***
    address 0x18, cause 'memory not mapped'
    An irrecoverable exception occurred. R is aborting now ...
    Warning in mclapply(data[, colSNPs, drop = FALSE], snp, sep = sep, ...) :
     scheduled cores 1, 2 did not deliver results, all values of the jobs will be affected
    Quitting from lines 137-140 (SNPassoc.Rmd)
    Error: processing vignette 'SNPassoc.Rmd' failed with diagnostics:
    arguments imply differing number of rows: 1578, 0
    --- failed re-building 'SNPassoc.Rmd'
    
    SUMMARY: processing the following file failed:
     'SNPassoc.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 2.0-2
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘BiocStyle’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 2.0-2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building ‘SNPassoc.Rmd’ using rmarkdown
    Registered S3 method overwritten by 'SNPassoc':
     method from
     summary.haplo.glm haplo.stats
    OMP: Warning #96: Cannot form a team with 15 threads, using 2 instead.
    OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
    Warning in `[.data.frame`(x, colSNPs, drop = FALSE) :
     'drop' argument will be ignored
    
     *** caught segfault ***
    address 0x18, cause 'memory not mapped'
    An irrecoverable exception occurred. R is aborting now ...
    
     *** caught segfault ***
    address 0x18, cause 'memory not mapped'
    An irrecoverable exception occurred. R is aborting now ...
    Warning in mclapply(data[, colSNPs, drop = FALSE], snp, sep = sep, ...) :
     scheduled cores 1, 2 did not deliver results, all values of the jobs will be affected
    Quitting from lines 137-140 (SNPassoc.Rmd)
    Error: processing vignette 'SNPassoc.Rmd' failed with diagnostics:
    arguments imply differing number of rows: 1578, 0
    --- failed re-building ‘SNPassoc.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘SNPassoc.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang