CRAN Package Check Results for Package parameters

Last updated on 2021-10-27 07:56:16 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.15.0 25.17 380.22 405.39 OK
r-devel-linux-x86_64-debian-gcc 0.15.0 20.85 272.57 293.42 OK
r-devel-linux-x86_64-fedora-clang 0.15.0 486.08 OK
r-devel-linux-x86_64-fedora-gcc 0.15.0 489.76 OK
r-devel-windows-x86_64 0.15.0 29.00 475.00 504.00 OK
r-devel-windows-x86_64-gcc10-UCRT 0.15.0 OK
r-patched-linux-x86_64 0.15.0 32.56 356.57 389.13 OK
r-patched-solaris-x86 0.15.0 359.40 NOTE
r-release-linux-x86_64 0.15.0 22.62 358.22 380.84 OK
r-release-macos-arm64 0.15.0 OK
r-release-macos-x86_64 0.15.0 NOTE
r-release-windows-ix86+x86_64 0.14.0 35.00 376.00 411.00 ERROR
r-oldrel-macos-x86_64 0.15.0 NOTE
r-oldrel-windows-ix86+x86_64 0.15.0 34.00 315.00 349.00 OK

Check Details

Version: 0.15.0
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking: 'glmmTMB', 'M3C'
Flavor: r-patched-solaris-x86

Version: 0.15.0
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: ‘M3C’
Flavors: r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.14.0
Check: tests
Result: ERROR
     Running 'spelling.R' [0s]
     Running 'testthat.R' [155s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > if (require("testthat")) {
     + library(parameters)
     + if (length(strsplit(packageDescription("parameters")$Version, "\\.")[[1]]) > 3) {
     + Sys.setenv("RunAllparametersTests" = "yes")
     + } else {
     + Sys.setenv("RunAllparametersTests" = "no")
     + }
     +
     + osx <- tryCatch(
     + {
     + si <- Sys.info()
     + if (!is.null(si["sysname"])) {
     + si["sysname"] == "Darwin" || grepl("^darwin", R.version$os)
     + } else {
     + FALSE
     + }
     + },
     + error = function(e) {
     + FALSE
     + }
     + )
     +
     + if (!osx) {
     + test_check("parameters")
     + }
     + }
     Loading required package: testthat
     Registered S3 methods overwritten by 'parameters':
     method from
     as.double.parameters_kurtosis datawizard
     as.double.parameters_skewness datawizard
     as.double.parameters_smoothness datawizard
     as.numeric.parameters_kurtosis datawizard
     as.numeric.parameters_skewness datawizard
     as.numeric.parameters_smoothness datawizard
     print.parameters_distribution datawizard
     print.parameters_kurtosis datawizard
     print.parameters_skewness datawizard
     summary.parameters_kurtosis datawizard
     summary.parameters_skewness datawizard
     Loading required package: lme4
     Loading required package: Matrix
     Loading required package: GLMMadaptive
    
     Attaching package: 'GLMMadaptive'
    
     The following object is masked from 'package:lme4':
    
     negative.binomial
    
     Model has no zero-inflation component!
     Model has no zero-inflation component!
     Model has no zero-inflation component!
     Loading required package: MCMCglmm
     Loading required package: coda
     Loading required package: ape
     Loading required package: PMCMRplus
     Loading required package: betareg
     Loading required package: brglm2
     Waiting for profiling to be done...
     Computing bootstrap confidence intervals ...
    
     167 message(s): boundary (singular) fit: see ?isSingular
    
     Loading required package: insight
     Loading required package: survival
     Loading required package: bayestestR
    
     Attaching package: 'bayestestR'
    
     The following object is masked from 'package:insight':
    
     reshape_ci
    
     Loading required package: splines
     Loading required package: pscl
     Classes and Methods for R developed in the
     Political Science Computational Laboratory
     Department of Political Science
     Stanford University
     Simon Jackman
     hurdle and zeroinfl functions by Achim Zeileis
     Gu & Wahba 4 term additive model
     4 term additive + random effectGu & Wahba 4 term additive model
    
     Maximum number of PQL iterations: 20
     iteration 1
     iteration 2
     iteration 3
     Loading required package: gee
     Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
     running glm to get initial regression estimate
     (Intercept) tensionM tensionH
     36.38889 -10.00000 -14.72222
     Loading required package: geepack
     Loading required package: AER
     Loading required package: car
     Loading required package: carData
     Loading required package: lmtest
     Loading required package: zoo
    
     Attaching package: 'zoo'
    
     The following objects are masked from 'package:base':
    
     as.Date, as.Date.numeric
    
     Loading required package: sandwich
     Loading required package: lavaan
     This is lavaan 0.6-9
     lavaan is FREE software! Please report any bugs.
     Loading required package: mice
    
     Attaching package: 'mice'
    
     The following object is masked from 'package:stats':
    
     filter
    
     The following objects are masked from 'package:base':
    
     cbind, rbind
    
     Loading required package: logspline
     Multiple `BFBayesFactor` models detected - posteriors are extracted from the first numerator model.
     See help("get_parameters", package = "insight").
     Multiple `BFBayesFactor` models detected - posteriors are extracted from the first numerator model.
     See help("get_parameters", package = "insight").
     Contrasts set to contr.sum for the following variables: treatment, gender
     Loading required package: effectsize
     Loading required package: gam
     Loading required package: foreach
     Loaded gam 1.20
    
    
     Attaching package: 'gam'
    
     The following objects are masked from 'package:mgcv':
    
     gam, gam.control, gam.fit, s
    
     Loading required package: blme
     Loading required package: cplm
    
     Attaching package: 'cplm'
    
     The following object is masked from 'package:nlme':
    
     VarCorr
    
     The following object is masked from 'package:lme4':
    
     VarCorr
    
     Loading required package: psych
    
     Attaching package: 'psych'
    
     The following object is masked from 'package:effectsize':
    
     phi
    
     The following object is masked from 'package:lavaan':
    
     cor2cov
    
     The following object is masked from 'package:car':
    
     logit
    
     The following object is masked from 'package:testthat':
    
     describe
    
     Loading required package: FactoMineR
     Loading required namespace: GPArotation
     Loading required package: multcomp
     Loading required package: mvtnorm
     Loading required package: TH.data
     Loading required package: MASS
    
     Attaching package: 'MASS'
    
     The following object is masked from 'package:GLMMadaptive':
    
     negative.binomial
    
    
     Attaching package: 'TH.data'
    
     The following object is masked from 'package:MASS':
    
     geyser
    
     Loading required package: boot
    
     Attaching package: 'boot'
    
     The following object is masked from 'package:psych':
    
     logit
    
     The following object is masked from 'package:car':
    
     logit
    
     The following object is masked from 'package:survival':
    
     aml
    
     Loading required package: mediation
     mediation: Causal Mediation Analysis
     Version: 4.5.0
    
    
     Attaching package: 'mediation'
    
     The following object is masked from 'package:psych':
    
     mediate
    
     Loading required package: metafor
    
     Loading the 'metafor' package (version 3.0-2). For an
     introduction to the package please type: help(metafor)
    
    
     Attaching package: 'metafor'
    
     The following object is masked from 'package:cplm':
    
     ranef
    
     The following object is masked from 'package:car':
    
     vif
    
     Loading required package: mfx
     Loading required package: bbmle
     Loading required package: stats4
     Loading required package: truncreg
     Loading required package: maxLik
     Loading required package: miscTools
    
     Attaching package: 'miscTools'
    
     The following object is masked from 'package:bbmle':
    
     stdEr
    
    
     Please cite the 'maxLik' package as:
     Henningsen, Arne and Toomet, Ott (2011). maxLik: A package for maximum likelihood estimation in R. Computational Statistics 26(3), 443-458. DOI 10.1007/s00180-010-0217-1.
    
     If you have questions, suggestions, or comments regarding the 'maxLik' package, please use a forum or 'tracker' at maxLik's R-Forge site:
     https://r-forge.r-project.org/projects/maxlik/
     Loading required package: VGAM
    
     Attaching package: 'VGAM'
    
     The following object is masked from 'package:bbmle':
    
     AICc
    
     The following objects are masked from 'package:boot':
    
     logit, simplex
    
     The following objects are masked from 'package:psych':
    
     fisherz, logistic, logit
    
     The following object is masked from 'package:gam':
    
     s
    
     The following object is masked from 'package:AER':
    
     tobit
    
     The following object is masked from 'package:lmtest':
    
     lrtest
    
     The following object is masked from 'package:car':
    
     logit
    
     The following object is masked from 'package:mgcv':
    
     s
    
     The following object is masked from 'package:coda':
    
     nvar
    
     Loading required package: lmerTest
    
     Attaching package: 'lmerTest'
    
     The following object is masked from 'package:lme4':
    
     lmer
    
     The following object is masked from 'package:stats':
    
     step
    
     Loading required package: pbkrtest
     Loading required package: clubSandwich
     Loading required package: nFactors
     Loading required package: lattice
    
     Attaching package: 'lattice'
    
     The following object is masked from 'package:boot':
    
     melanoma
    
    
     Attaching package: 'nFactors'
    
     The following object is masked from 'package:lattice':
    
     parallel
    
     Loading required package: plm
    
     Attaching package: 'plm'
    
     The following objects are masked from 'package:VGAM':
    
     has.intercept, nobs
    
     The following object is masked from 'package:stats4':
    
     nobs
    
     The following objects are masked from 'package:cplm':
    
     fixef, ranef
    
     The following object is masked from 'package:lavaan':
    
     nobs
    
     == Skipped tests ===============================================================
     * On CRAN (5)
    
     == Failed tests ================================================================
     -- Failure (test-model_parameters.aov_es_ci.R:15:5): model_parameters.aov ------
     mp$Omega2_CI_low (`actual`) not equal to c(0.29018, NA) (`expected`).
    
     `actual`: 0.31 NA
     `expected`: 0.29 NA
     -- Failure (test-model_parameters.aov_es_ci.R:29:5): model_parameters.aov ------
     mp$Eta2_CI_low (`actual`) not equal to c(0.53866, 0, 0, 0, 0, 0, 0, NA) (`expected`).
    
     `actual[1:4]`: 0.56 0.00 0.00 0.00
     `expected[1:4]`: 0.54 0.00 0.00 0.00
     -- Failure (test-model_parameters.aov_es_ci.R:89:7): model_parameters.car-anova --
     mp$Omega2_CI_low (`actual`) not equal to c(0, 0.0284, 0, NA) (`expected`).
    
     `actual`: 0.000 0.051 0.007 NA
     `expected`: 0.000 0.028 0.000 NA
     -- Failure (test-model_parameters.aov_es_ci.R:112:5): model_parameters.maov ----
     mp$Omega2_CI_low (`actual`) not equal to c(0.71218, NA, 0.50841, NA, 0.53774, NA) (`expected`).
    
     `actual`: 0.74 NA 0.55 NA 0.58 NA
     `expected`: 0.71 NA 0.51 NA 0.54 NA
     -- Error (test-model_parameters.htest.R:37:5): (code run outside of `test_that()`) --
     Error: Cramer's V not applicable to goodness-of-fit tests.
     Backtrace:
     x
     1. +-parameters::model_parameters(...) test-model_parameters.htest.R:37:4
     2. \-parameters:::model_parameters.htest(...)
     3. \-parameters:::.extract_parameters_htest(...)
     4. \-parameters:::.add_effectsize_chi2(...)
     5. +-effectsize::effectsize(...)
     6. \-effectsize:::effectsize.htest(...)
     7. \-effectsize:::f(...)
    
     [ FAIL 5 | WARN 0 | SKIP 5 | PASS 424 ]
     Error: Test failures
     Execution halted
Flavor: r-release-windows-ix86+x86_64