CRAN Package Check Results for Package pastis

Last updated on 2019-07-16 07:50:57 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1-2 4.18 41.51 45.69 NOTE
r-devel-linux-x86_64-debian-gcc 0.1-2 3.41 34.67 38.08 NOTE
r-devel-linux-x86_64-fedora-clang 0.1-2 56.63 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1-2 55.21 NOTE
r-devel-windows-ix86+x86_64 0.1-2 13.00 61.00 74.00 NOTE
r-patched-linux-x86_64 0.1-2 4.19 42.27 46.46 NOTE
r-patched-solaris-x86 0.1-2 94.20 NOTE
r-release-linux-x86_64 0.1-2 3.91 41.51 45.42 NOTE
r-release-windows-ix86+x86_64 0.1-2 8.00 94.00 102.00 NOTE
r-release-osx-x86_64 0.1-2 NOTE
r-oldrel-windows-ix86+x86_64 0.1-2 9.00 56.00 65.00 NOTE
r-oldrel-osx-x86_64 0.1-2 NOTE

Check Details

Version: 0.1-2
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'ape' 'caper'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1-2
Check: R code for possible problems
Result: NOTE
    conch: no visible global function definition for 'read.tree'
    conch: no visible global function definition for 'reorder'
    conch: no visible global function definition for 'read.nexus'
    conch: no visible global function definition for '.compressTipLabel'
    conch: no visible global function definition for 'drop.tip'
    conch: no visible global function definition for 'extract.clade'
    conch: no visible global function definition for 'which.edge'
    conch: no visible global function definition for 'write.tree'
    pastis_main: no visible global function definition for 'combn'
    read_input: no visible global function definition for 'read.tree'
    read_input: no visible global function definition for 'reorder'
    read_input: no visible global function definition for 'read.csv'
    read_input: no visible global function definition for 'read.dna'
    Undefined global functions or variables:
     .compressTipLabel combn drop.tip extract.clade read.csv read.dna
     read.nexus read.tree reorder which.edge write.tree
    Consider adding
     importFrom("stats", "reorder")
     importFrom("utils", "combn", "read.csv")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-ix86+x86_64, r-patched-linux-x86_64, r-patched-solaris-x86, r-release-linux-x86_64, r-release-windows-ix86+x86_64, r-release-osx-x86_64, r-oldrel-windows-ix86+x86_64, r-oldrel-osx-x86_64

Version: 0.1-2
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'pastis_data_1' 'pastis_data_2' 'pastis_data_3'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc