CRAN Package Check Results for Package polyRAD

Last updated on 2019-07-16 07:50:58 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1 33.65 107.08 140.73 OK
r-devel-linux-x86_64-debian-gcc 1.1 23.06 82.30 105.36 OK
r-devel-linux-x86_64-fedora-clang 1.1 175.90 OK
r-devel-linux-x86_64-fedora-gcc 1.1 182.77 OK
r-devel-windows-ix86+x86_64 1.1 84.00 143.00 227.00 OK
r-patched-linux-x86_64 1.1 29.66 105.73 135.39 OK
r-patched-solaris-x86 1.1 236.70 OK
r-release-linux-x86_64 1.1 26.98 104.34 131.32 OK
r-release-windows-ix86+x86_64 1.1 59.00 210.00 269.00 OK
r-release-osx-x86_64 1.1 ERROR
r-oldrel-windows-ix86+x86_64 1.1 82.00 139.00 221.00 OK
r-oldrel-osx-x86_64 1.1 WARN

Check Details

Version: 1.1
Check: package dependencies
Result: ERROR
    Package required but not available: ‘pcaMethods’
    
    Packages suggested but not available for checking:
     'Rsamtools', 'GenomeInfoDb', 'Biostrings', 'GenomicRanges',
     'VariantAnnotation', 'SummarizedExperiment', 'S4Vectors', 'IRanges',
     'BiocGenerics', 'GenomicFeatures'
    
    See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
    manual.
Flavor: r-release-osx-x86_64

Version: 1.1
Check: package dependencies
Result: NOTE
    Packages suggested but not available for checking:
     ‘Rsamtools’ ‘VariantAnnotation’ ‘GenomicFeatures’
Flavor: r-oldrel-osx-x86_64

Version: 1.1
Check: Rd cross-references
Result: NOTE
    Packages unavailable to check Rd xrefs: ‘Rsamtools’, ‘BSgenome’, ‘GenomicFeatures’, ‘VariantAnnotation’
Flavor: r-oldrel-osx-x86_64

Version: 1.1
Check: re-building of vignette outputs
Result: WARN
    Error in re-building vignettes:
     ...
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
     Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    
    For example usage please run: vignette('qqman')
    
    Citation appreciated but not required:
    Turner, S.D. qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots. biorXiv DOI: 10.1101/005165 (2014).
    
    Quitting from lines 410-413 (polyRADtutorial.Rmd)
    Error: processing vignette 'polyRADtutorial.Rmd' failed with diagnostics:
    there is no package called 'VariantAnnotation'
    Execution halted
Flavor: r-oldrel-osx-x86_64