admix: Package Admix for Admixture (aka Contamination) Models

Implements several methods to estimate the unknown quantities related to two-component admixture models, where the two components can belong to any distribution (note that in the case of multinomial mixtures, the two components must belong to the same family). Estimation methods depend on the assumptions made on the unknown component density (see Bordes and Vandekerkhove (2010) <doi:10.3103/S1066530710010023>; Patra and Sen (2016) <doi:10.1111/rssb.12148>); Milhaud, Pommeret, Salhi and Vandekerkhove (2021) <https://hal.archives-ouvertes.fr/hal-03201760>). In practice, one can estimate both the mixture weight and the unknown component density in a wide variety of frameworks. On top of that, hypothesis tests can be performed in one and two-samples contexts to test the unknown component density. Finally, clustering of unknown mixture components is also feasible in a K-samples setting.

Version: 0.3.2
Depends: R (≥ 2.10)
Imports: base, fdrtool, graphics, Iso, latex2exp, MASS, methods, orthopolynom, pracma, Rcpp, stats, utils
LinkingTo: Rcpp
Suggests: rmutil, doParallel, foreach, evd, logitnorm, flexsurv, plyr, reshape2, gridExtra, lattice, testthat (≥ 3.0.0), knitr, rmarkdown, markdown
Published: 2021-06-14
Author: Xavier Milhaud [aut, cre], Pierre Vandekerkhove [ctb], Denys Pommeret [ctb], Yahia Salhi [ctb]
Maintainer: Xavier Milhaud <xavier.milhaud.research at gmail.com>
BugReports: https://github.com/XavierMilhaud/admix/issues
License: GPL (≥ 3)
URL: https://github.com/XavierMilhaud/admix
NeedsCompilation: yes
Materials: README
CRAN checks: admix results

Documentation:

Reference manual: admix.pdf
Vignettes: Clustering of unknown subpopulations in admixture models
Estimation of unknown elements in admixture models
Hypothesis test in admixture models

Downloads:

Package source: admix_0.3.2.tar.gz
Windows binaries: r-devel: admix_0.3.2.zip, r-devel-UCRT: admix_0.3.2.zip, r-release: admix_0.3.2.zip, r-oldrel: admix_0.3.2.zip
macOS binaries: r-release (arm64): admix_0.3.2.tgz, r-release (x86_64): admix_0.3.2.tgz, r-oldrel: admix_0.3.2.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=admix to link to this page.