coreheat: Correlation Heatmaps

Create correlation heatmaps from a numeric matrix. Ensembl Gene ID row names can be converted to Gene Symbols using, e.g., BioMart. Optionally, data can be clustered and filtered by correlation, tree cutting and/or number of missing values. Genes of interest can be highlighted in the plot and correlation significance be indicated by asterisks encoding corresponding P-Values. Plot dimensions and label measures are adjusted automatically by default. The plot features rely on the heatmap.n2() function in the 'heatmapFlex' package.

Version: 0.2.2
Depends: Biobase
Imports: WGCNA, heatmapFlex, convertid (≥ 0.1.3), methods, graphics, grDevices
Suggests: rmarkdown, knitr
Published: 2021-09-19
Author: Vidal Fey [aut, cre], Henri Sara [aut]
Maintainer: Vidal Fey <vidal.fey at gmail.com>
License: GPL-3
NeedsCompilation: no
CRAN checks: coreheat results

Documentation:

Reference manual: coreheat.pdf
Vignettes: coreheat-vignette

Downloads:

Package source: coreheat_0.2.2.tar.gz
Windows binaries: r-devel: coreheat_0.2.2.zip, r-release: coreheat_0.2.2.zip, r-oldrel: coreheat_0.2.2.zip
macOS binaries: r-release (arm64): not available, r-release (x86_64): not available, r-oldrel: not available

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