hagis: Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity

Analysis of plant pathogen pathotype survey data. Functions provided calculate distribution of susceptibilities, distribution of complexities with statistics, pathotype frequency distribution, as well as diversity indices for pathotypes. This package is meant to be a direct replacement for Herrmann, Löwer, Schachtel's (1999) <doi:10.1046/j.1365-3059.1999.00325.x> Habgood-Gilmour Spreadsheet, 'HaGiS', previously used for pathotype analysis.

Version: 2.0.0
Depends: R (≥ 3.2.0)
Imports: data.table, ggplot2, graphics, pander, stats, utils, vegan
Suggests: covr, knitr, pkgdown, rmarkdown, testthat, vdiffr
Published: 2019-06-24
Author: Austin G. McCoy ORCID iD [aut, ccp], Zachary Noel ORCID iD [aut, ccp], Adam H. Sparks ORCID iD [aut, cre], Martin Chilvers ORCID iD [aut]
Maintainer: Adam H. Sparks <adam.sparks at usq.edu.au>
BugReports: https://github.com/openplantpathology/hagis/issues
License: MIT + file LICENSE
URL: https://github.com/openplantpathology/hagis, https://openplantpathology.github.io/hagis/
NeedsCompilation: no
Language: en-US
Citation: hagis citation info
Materials: README NEWS
CRAN checks: hagis results


Reference manual: hagis.pdf
Vignettes: hagis: Tools for Analysis of Plant Pathogen Pathotype Complexities, Distributions and Diversity
Package source: hagis_2.0.0.tar.gz
Windows binaries: r-devel: hagis_2.0.0.zip, r-release: hagis_2.0.0.zip, r-oldrel: hagis_2.0.0.zip
OS X binaries: r-release: hagis_2.0.0.tgz, r-oldrel: hagis_2.0.0.tgz


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