refGenome: Gene and Splice Site Annotation Using Annotation Data from 'Ensembl' and 'UCSC' Genome Browsers

Contains functionalities for importing and managing downloaded genome annotation data from 'Ensembl' genome browser (European Bioinformatics Institute, <>) and from 'UCSC' genome browser (University of California, Santa Cruz, <>) and annotation routines for genomic positions and splice site positions.

Version: 1.7.7
Depends: methods, doBy, RSQLite
Imports: DBI
Published: 2019-05-22
Author: Wolfgang Kaisers [aut, cre]
Maintainer: Wolfgang Kaisers <wolfgang.kaisers at>
License: GPL-2
NeedsCompilation: yes
Materials: NEWS ChangeLog
CRAN checks: refGenome results


Reference manual: refGenome.pdf
Vignettes: readGTF
Package source: refGenome_1.7.7.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
OS X binaries: r-release: refGenome_1.7.7.tgz, r-oldrel: refGenome_1.7.7.tgz
Old sources: refGenome archive


Please use the canonical form to link to this page.